View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_34 (Length: 450)
Name: NF17134_low_34
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 35742113 - 35742357
Alignment:
| Q |
21 |
ttacattattttaaatgtggagatgtggtgagttcatattcgaacatcaatcctacatgatattgtctttgcaactaacaccgagcttcgcttacatgac |
120 |
Q |
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| T |
35742113 |
ttacattattttaaatgtggagatgtggtgagttcatattcgaacatcaatcctacatgatattgtctttgcaactaacaccgagcttcgcttacatgat |
35742212 |
T |
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| Q |
121 |
gacttattcctacttttgtgcattatggaagtaaaaattcagtttgcaaattgccgacctttttcatcgtagaaattgtacattagtgatatgcagtcat |
220 |
Q |
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| T |
35742213 |
gacttattcctacttttgtgcatcatggaagtaaaaattcagtttgcaaattgccgacc-ttttcatcgtagaaattgtacattagtgatatgcagtcat |
35742311 |
T |
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| Q |
221 |
acaatttacaaattcaaaaattaatttgcttaacgggatattaatc |
266 |
Q |
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| T |
35742312 |
acaatttacaaattcaaaaattaatttgcttaacgggatattaatc |
35742357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 35742401 - 35742450
Alignment:
| Q |
267 |
gttttctttattaatcaggtttgtaataatcaaagtgtgagtagtaattg |
316 |
Q |
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| T |
35742401 |
gttttctttattaatcaggtttgtaataatcaaagtgtgagtagtaattg |
35742450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 35742512 - 35742575
Alignment:
| Q |
378 |
gggtcatgtatatattcttatatgtagttagttttgtcaatattgttataatgactaatattctt |
442 |
Q |
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| T |
35742512 |
gggtcatgtatatattcttataagtagttagttttgt-aataatgttatagtgactaatcttctt |
35742575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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