View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17134_low_36 (Length: 449)

Name: NF17134_low_36
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17134_low_36
NF17134_low_36
[»] chr4 (58 HSPs)
chr4 (1-150)||(47128413-47128562)
chr4 (2-150)||(34769030-34769188)
chr4 (1-150)||(54779866-54780005)
chr4 (1-150)||(23510309-23510467)
chr4 (4-148)||(35780007-35780161)
chr4 (148-344)||(47127981-47128167)
chr4 (148-218)||(10978233-10978303)
chr4 (148-218)||(34769432-34769502)
chr4 (278-344)||(10431442-10431508)
chr4 (279-344)||(55255080-55255145)
chr4 (148-341)||(48208453-48208636)
chr4 (148-258)||(9579350-9579458)
chr4 (148-258)||(9585045-9585153)
chr4 (278-341)||(17679220-17679283)
chr4 (278-344)||(5128983-5129049)
chr4 (278-344)||(37514558-37514624)
chr4 (278-344)||(45560704-45560770)
chr4 (102-150)||(10978534-10978582)
chr4 (102-150)||(48208877-48208925)
chr4 (278-328)||(1105447-1105497)
chr4 (279-329)||(38209842-38209892)
chr4 (102-150)||(9579058-9579106)
chr4 (102-150)||(9584753-9584801)
chr4 (278-342)||(13459786-13459850)
chr4 (148-190)||(23510717-23510759)
chr4 (290-344)||(32915297-32915351)
chr4 (65-106)||(35780188-35780229)
chr4 (65-106)||(48208811-48208852)
chr4 (65-106)||(54779800-54779841)
chr4 (66-106)||(10978468-10978508)
chr4 (278-325)||(9579469-9579516)
chr4 (278-325)||(9585164-9585211)
chr4 (278-329)||(34769533-34769584)
chr4 (65-106)||(9579131-9579172)
chr4 (65-106)||(9584826-9584867)
chr4 (1-46)||(10431083-10431128)
chr4 (162-258)||(17679297-17679391)
chr4 (65-106)||(23510492-23510533)
chr4 (278-335)||(27596639-27596696)
chr4 (65-106)||(34769213-34769254)
chr4 (171-218)||(13459904-13459951)
chr4 (107-145)||(9579201-9579239)
chr4 (107-145)||(9584896-9584934)
chr4 (107-145)||(23510562-23510600)
chr4 (107-145)||(35780258-35780296)
chr4 (107-145)||(48208744-48208782)
chr4 (65-106)||(47128347-47128388)
chr4 (304-344)||(10978144-10978184)
chr4 (278-314)||(51964204-51964240)
chr4 (107-150)||(47128275-47128318)
chr4 (357-396)||(55352528-55352567)
chr4 (307-341)||(23510929-23510963)
chr4 (107-145)||(34769283-34769321)
chr4 (278-328)||(35780556-35780606)
chr4 (285-335)||(54779450-54779500)
chr4 (107-145)||(54779733-54779771)
chr4 (278-335)||(24969251-24969308)
chr4 (278-338)||(54083478-54083538)
[»] chr1 (33 HSPs)
chr1 (1-150)||(4977335-4977484)
chr1 (1-150)||(5316186-5316335)
chr1 (1-150)||(21741383-21741542)
chr1 (1-150)||(50881085-50881244)
chr1 (65-150)||(50880975-50881060)
chr1 (148-218)||(5315872-5315942)
chr1 (278-344)||(14146205-14146271)
chr1 (279-344)||(44655539-44655604)
chr1 (148-258)||(50880630-50880736)
chr1 (279-345)||(27906949-27907015)
chr1 (278-344)||(41697279-41697345)
chr1 (278-345)||(3406322-3406389)
chr1 (278-345)||(3440431-3440498)
chr1 (278-340)||(6888473-6888535)
chr1 (94-150)||(4977496-4977552)
chr1 (278-345)||(16139959-16140026)
chr1 (278-336)||(6771704-6771762)
chr1 (65-106)||(4977577-4977618)
chr1 (278-344)||(10912094-10912160)
chr1 (298-344)||(50880568-50880614)
chr1 (65-106)||(50880909-50880950)
chr1 (107-145)||(5316053-5316091)
chr1 (107-145)||(21741637-21741675)
chr1 (278-344)||(23181711-23181777)
chr1 (73-106)||(5316120-5316153)
chr1 (65-106)||(23182247-23182288)
chr1 (352-424)||(6494435-6494507)
chr1 (278-338)||(13913716-13913776)
chr1 (278-338)||(40502024-40502084)
chr1 (107-145)||(4977647-4977685)
chr1 (286-328)||(5027982-5028024)
chr1 (278-335)||(1367111-1367168)
chr1 (73-106)||(21741575-21741608)
[»] chr5 (29 HSPs)
chr5 (1-150)||(23285386-23285539)
chr5 (3-150)||(27078620-27078767)
chr5 (1-150)||(30853696-30853855)
chr5 (1-150)||(22986940-22987098)
chr5 (278-344)||(15480229-15480295)
chr5 (278-344)||(19523093-19523159)
chr5 (148-344)||(30853266-30853453)
chr5 (278-344)||(31881590-31881656)
chr5 (278-341)||(36188019-36188082)
chr5 (279-340)||(34756615-34756676)
chr5 (278-344)||(16592845-16592911)
chr5 (281-344)||(22987470-22987534)
chr5 (278-344)||(2274798-2274864)
chr5 (65-106)||(16592493-16592534)
chr5 (65-106)||(22987123-22987164)
chr5 (65-106)||(23285564-23285605)
chr5 (65-106)||(27078554-27078595)
chr5 (169-258)||(16592742-16592831)
chr5 (107-145)||(23285634-23285672)
chr5 (278-344)||(31194767-31194833)
chr5 (148-212)||(22987344-22987407)
chr5 (65-106)||(30853631-30853671)
chr5 (107-146)||(27078486-27078525)
chr5 (278-344)||(16199026-16199092)
chr5 (107-145)||(16592563-16592601)
chr5 (278-328)||(16799556-16799606)
chr5 (107-145)||(22987193-22987231)
chr5 (229-258)||(31881547-31881576)
chr5 (278-338)||(27923891-27923951)
[»] chr6 (19 HSPs)
chr6 (1-150)||(19740698-19740856)
chr6 (279-345)||(13727650-13727716)
chr6 (279-344)||(21479284-21479349)
chr6 (278-342)||(23070889-23070953)
chr6 (278-345)||(19741223-19741290)
chr6 (278-344)||(12083640-12083706)
chr6 (283-341)||(21280336-21280394)
chr6 (278-344)||(24711142-24711208)
chr6 (287-344)||(27314773-27314830)
chr6 (278-345)||(1156017-1156084)
chr6 (278-344)||(30832667-30832732)
chr6 (279-344)||(33773900-33773964)
chr6 (287-344)||(27579084-27579141)
chr6 (65-106)||(19740881-19740922)
chr6 (107-145)||(19740951-19740989)
chr6 (278-328)||(19986982-19987032)
chr6 (279-328)||(11081684-11081733)
chr6 (278-335)||(17353768-17353825)
chr6 (278-335)||(27788922-27788979)
[»] chr2 (26 HSPs)
chr2 (1-150)||(34693567-34693726)
chr2 (1-150)||(34715979-34716138)
chr2 (46-150)||(29940109-29940213)
chr2 (1-110)||(40445379-40445488)
chr2 (345-435)||(44692104-44692194)
chr2 (148-345)||(34693146-34693330)
chr2 (148-345)||(34715558-34715742)
chr2 (279-344)||(3155003-3155068)
chr2 (278-346)||(7162675-7162743)
chr2 (148-254)||(5952830-5952933)
chr2 (279-342)||(6964794-6964857)
chr2 (278-344)||(12337689-12337755)
chr2 (279-344)||(4505679-4505744)
chr2 (278-344)||(3952899-3952965)
chr2 (164-343)||(40635963-40636130)
chr2 (281-344)||(3399509-3399572)
chr2 (65-106)||(29940238-29940279)
chr2 (65-106)||(34715913-34715954)
chr2 (66-106)||(34693501-34693541)
chr2 (278-344)||(41213928-41213994)
chr2 (279-340)||(8907330-8907391)
chr2 (297-342)||(5952949-5952993)
chr2 (278-338)||(27506975-27507035)
chr2 (278-335)||(26715940-26715997)
chr2 (278-334)||(9045842-9045898)
chr2 (278-338)||(24410242-24410302)
[»] chr3 (28 HSPs)
chr3 (1-150)||(3954346-3954505)
chr3 (46-150)||(8073597-8073701)
chr3 (148-343)||(3954735-3954917)
chr3 (279-345)||(38681348-38681414)
chr3 (279-344)||(36716276-36716341)
chr3 (278-344)||(50258734-50258800)
chr3 (279-344)||(27078819-27078884)
chr3 (279-344)||(27084616-27084681)
chr3 (278-344)||(13795187-13795253)
chr3 (278-344)||(42098698-42098764)
chr3 (278-344)||(47467582-47467647)
chr3 (279-336)||(54619454-54619511)
chr3 (279-330)||(36605860-36605911)
chr3 (278-344)||(21582668-21582734)
chr3 (278-344)||(53149457-53149523)
chr3 (163-258)||(18372109-18372201)
chr3 (65-106)||(8073726-8073767)
chr3 (281-344)||(18372033-18372095)
chr3 (297-344)||(29620618-29620665)
chr3 (278-335)||(1148354-1148411)
chr3 (65-106)||(3954530-3954571)
chr3 (107-150)||(3954600-3954643)
chr3 (281-335)||(48156951-48157005)
chr3 (278-335)||(9878919-9878976)
chr3 (278-335)||(34290874-34290931)
chr3 (278-335)||(53507117-53507174)
chr3 (278-334)||(43207474-43207530)
chr3 (278-338)||(50939468-50939528)
[»] chr8 (16 HSPs)
chr8 (1-150)||(41878596-41878755)
chr8 (279-345)||(2952473-2952539)
chr8 (278-344)||(20003876-20003942)
chr8 (279-344)||(5860996-5861061)
chr8 (279-345)||(30883109-30883175)
chr8 (279-344)||(3048774-3048839)
chr8 (148-258)||(41878246-41878354)
chr8 (278-344)||(37430301-37430367)
chr8 (278-342)||(41878167-41878231)
chr8 (65-106)||(41878530-41878571)
chr8 (278-334)||(45472201-45472257)
chr8 (65-106)||(45472627-45472668)
chr8 (278-338)||(42600590-42600650)
chr8 (107-150)||(41878458-41878501)
chr8 (107-146)||(45472559-45472598)
chr8 (1-36)||(45472696-45472731)
[»] scaffold0070 (1 HSPs)
scaffold0070 (278-344)||(1011-1077)
[»] chr7 (8 HSPs)
chr7 (278-344)||(12596429-12596495)
chr7 (279-344)||(18777019-18777084)
chr7 (278-343)||(28749582-28749647)
chr7 (278-344)||(10955378-10955444)
chr7 (278-345)||(29076929-29076998)
chr7 (229-258)||(28749664-28749693)
chr7 (148-212)||(29077053-29077116)
chr7 (278-335)||(47985202-47985259)
[»] scaffold0001 (1 HSPs)
scaffold0001 (299-344)||(181435-181480)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 58)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 47128562 - 47128413
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47128562 acaaaaactcccaaaacagtaaatatgcagaaatcaattattactacttctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaac 47128463  T
Q  101 attcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47128462 attcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 47128413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 34769030 - 34769188
Alignment:
Q  2 caaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctc----------tatcaatctctattttagc 91  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||    
T  34769030 caaaaactcccaaaatagtaaatatgctgaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctttatcaatctctattttagc 34769129  T
Q  92 aatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||    
T  34769130 aatttcaacattcaataaacagtgttgttttggaaattggaaaaccgattgaaatttga 34769188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 54780005 - 54779866
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||          |||||||||||||||    
T  54780005 acaaaaactcccaaaacagtaaatatgcagaaatcaattattactatttctgttgataatcaaccaaatctctat----------tttagcaatttcaac 54779916  T
Q  101 attcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54779915 attcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 54779866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 23510309 - 23510467
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctc----------tatcaatctctattttag 90  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||    
T  23510309 acaaaaactccgaaaacagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctttatcaatctctattttag 23510408  T
Q  91 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  23510409 caatttcaacgttcaacaaacaatgttgttttggaaa-gggaaaaccgattgaaatttga 23510467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 35780007 - 35780161
Alignment:
Q  4 aaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaacca----------aatctctatcaatctctattttagcaa 93  Q
    |||||||| |||| |||||||||||| ||||||||||  |||||||||||||||||||||| |          ||||| |||||||||||||||||||||    
T  35780007 aaaactcctaaaacagtaaatatgcataaatcaattaaaactaattctgttaataatcaactatattttttttaatctttatcaatctctattttagcaa 35780106  T
Q  94 tttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaattt 148  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35780107 tttcaacattcaacaaacagtgttgttttggaaaggggaaaatcgattgaaattt 35780161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 148 - 344
Target Start/End: Complemental strand, 47128167 - 47127981
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatatt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||          |||||||||||||||||||    
T  47128167 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaacgaaataa----ttttttttattggaggatatatatt 47128072  T
Q  248 atactgggtatnnnnnnnnnnnnnnnnnnnttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||| |||||                   ||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||    
T  47128071 atactaggtat------aaaaaaaaaaaaattgaggcccatccttgagggaggcccagctcgtttgggctgtttgcaccccctcagggacgcccctg 47127981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 10978303 - 10978233
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  10978303 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 10978233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 34769432 - 34769502
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  34769432 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 34769502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 10431442 - 10431508
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  10431442 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 10431508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 55255145 - 55255080
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  55255145 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 55255080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 48208636 - 48208453
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaactttt-gtgaaggaatgaaataagnnnnnnnnnttattggaggatatatat 246  Q
    ||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |||| |||||||||||           ||||||||||||||||||    
T  48208636 tgatggaatggaagaaaatcggtgatgagagcgaggaaatgtgtttcaactttttgtgagggaatgaaatat-atatattttttattggaggatatatat 48208538  T
Q  247 tatactgggtatnnnnnnnnnnnnnnnnnnnttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgccc 341  Q
    ||||||||||||                   ||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||    
T  48208537 tatactgggtataattttttt----------ttgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggatgccc 48208453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 9579350 - 9579458
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatatt 247  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||  ||||||||||           |||||||||||||||||||    
T  9579350 tgatggaatggaagaaaatcggtgatgagagtgaggaaacgtgtttcaacttttgtgagcgaatgaaata--tttttttttttattggaggatatatatt 9579447  T
Q  248 atactgggtat 258  Q
    |||||||||||    
T  9579448 atactgggtat 9579458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 9585045 - 9585153
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatatt 247  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||  ||||||||||           |||||||||||||||||||    
T  9585045 tgatggaatggaagaaaatcggtgatgagagtgaggaaacgtgtttcaacttttgtgagcgaatgaaata--tttttttttttattggaggatatatatt 9585142  T
Q  248 atactgggtat 258  Q
    |||||||||||    
T  9585143 atactgggtat 9585153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 17679283 - 17679220
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgccc 341  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  17679283 ttgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctcagggacgccc 17679220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 5128983 - 5129049
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  5128983 ttgaggcctatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggaacgcccctg 5129049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 37514624 - 37514558
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  37514624 ttgaggcccatccttggaggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 37514558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 45560704 - 45560770
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  45560704 ttgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctg 45560770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 10978582 - 10978534
Alignment:
Q  102 ttcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978582 ttcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 10978534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 48208925 - 48208877
Alignment:
Q  102 ttcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48208925 ttcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 48208877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 1105497 - 1105447
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcacccc 328  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1105497 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 1105447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 38209842 - 38209892
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcacccct 329  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38209842 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccct 38209892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 9579058 - 9579106
Alignment:
Q  102 ttcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9579058 ttcaacaaacagtgttgttttggaaatgggaaaaccgattgaaatttga 9579106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 9584753 - 9584801
Alignment:
Q  102 ttcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9584753 ttcaacaaacagtgttgttttggaaatgggaaaaccgattgaaatttga 9584801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 13459850 - 13459786
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccc 342  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||||| ||||| |||||||    
T  13459850 ttgaggcccatccttaagggaggctcagctcgtttgagctgtttgcaccccctcaggaacgcccc 13459786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 23510717 - 23510759
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcg 190  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23510717 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcg 23510759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 32915351 - 32915297
Alignment:
Q  290 cttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||| | ||||||||||||||||||||||| |||||||||||||||    
T  32915351 cttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgcccctg 32915297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 35780188 - 35780229
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35780188 caaatctctatcaatctctattttagcaatttcaacattcaa 35780229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 48208852 - 48208811
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  48208852 caaatctctatcaatctctattttagcaatttcaacattcaa 48208811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 54779841 - 54779800
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  54779841 caaatctctatcaatctctattttagcaatttcaacattcaa 54779800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 10978508 - 10978468
Alignment:
Q  66 aaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10978508 aaatctctatcaatctctattttagcaatttcaacattcaa 10978468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 9579469 - 9579516
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcac 325  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  9579469 ttgaagcccatccttgagggaggcccagctcgtttgagctgtttgcac 9579516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 9585164 - 9585211
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcac 325  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  9585164 ttgaagcccatccttgagggaggcccagctcgtttgagctgtttgcac 9585211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 34769533 - 34769584
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcacccct 329  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||||||||    
T  34769533 ttgaggcccatccttgagggaggcccaactcgtttgagctatttgcacccct 34769584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 9579131 - 9579172
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  9579131 caaatctctatcaatctctattttagtaatttcaacattcaa 9579172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 9584826 - 9584867
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  9584826 caaatctctatcaatctctattttagtaatttcaacattcaa 9584867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10431083 - 10431128
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattacta 46  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||    
T  10431083 acaaaaactcccaaaacagtaaatatgcataaatcaattattacta 10431128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 258
Target Start/End: Complemental strand, 17679391 - 17679297
Alignment:
Q  162 aaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatattatactgggtat 258  Q
    ||||||||||||||||||||||||||  |||| ||||||||||| ||||||| ||||          |||||||||||||||||||||||| |||||    
T  17679391 aaaatcggtgatgagagcgaggaaacatgtttaaacttttgtgagggaatgacataa--ctttttttttattggaggatatatattatactaggtat 17679297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 23510492 - 23510533
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  23510492 caaatctctatcaatctctattttagaaatttcaacattcaa 23510533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 27596639 - 27596696
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    |||||||||||||| | |||||||| ||||||||||||||||| ||||||| ||||||    
T  27596639 ttgaggcccatcctcgggggaggcccagctcgtttgagctgttcgcaccccctcaggg 27596696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 34769213 - 34769254
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  34769213 caaatttctatcaatctctattttagcaatttcaacattcaa 34769254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 13459951 - 13459904
Alignment:
Q  171 gatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataa 218  Q
    ||||||||||||||||||||||| |||||||||||  |||||||||||    
T  13459951 gatgagagcgaggaaacgcgtttcaacttttgtgagagaatgaaataa 13459904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 9579201 - 9579239
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  9579201 caaacagtgttgttttggaaaggggaaaactgattgaaa 9579239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 9584896 - 9584934
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  9584896 caaacagtgttgttttggaaaggggaaaactgattgaaa 9584934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 23510562 - 23510600
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  23510562 caaacagtgttgttttggaaaggggaaaactgattgaaa 23510600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 35780258 - 35780296
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  35780258 caaacagtgttgttttggaaagggaaaaaccgattgaaa 35780296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 48208782 - 48208744
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  48208782 caaacagtgttgttttggaaaggggaaaactgattgaaa 48208744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 47128388 - 47128347
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  47128388 caaatctctatcaatctctattttcacaatttcaacattcaa 47128347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 10978184 - 10978144
Alignment:
Q  304 agctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  10978184 agctcgtttgagctgtttgcaccctctcagggacgcccctg 10978144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 51964240 - 51964204
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttga 314  Q
    |||||||||||||||||||||||||||||| ||||||    
T  51964240 ttgaggcccatccttgagggaggcctagcttgtttga 51964204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 47128318 - 47128275
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    |||||| ||||||||||||||||||||||| |||||||| ||||    
T  47128318 caaacaatgttgttttggaaaggggaaaactgattgaaacttga 47128275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 55352567 - 55352528
Alignment:
Q  357 aacctccacctccacttagccaaaagactaagattcacca 396  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  55352567 aacctccacctccacttggccaaaagactaagatttacca 55352528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 23510929 - 23510963
Alignment:
Q  307 tcgtttgagctgtttgcaccccttcagggacgccc 341  Q
    |||||||||||||||||||||| ||||||||||||    
T  23510929 tcgtttgagctgtttgcaccccctcagggacgccc 23510963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 34769283 - 34769321
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  34769283 caaacagtgttgttttggaaaggggtaaactgattgaaa 34769321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 35780556 - 35780606
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcacccc 328  Q
    |||||||| |||| || |||||||| |||||| ||||||||||||||||||    
T  35780556 ttgaggcctatccgtgggggaggcccagctcggttgagctgtttgcacccc 35780606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 54779500 - 54779450
Alignment:
Q  285 ccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    ||||||||| |||||||| |||||| ||||||||||||||| || ||||||    
T  54779500 ccatccttgggggaggcccagctcggttgagctgtttgcactccctcaggg 54779450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 54779771 - 54779733
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  54779771 caaacagtgttgttatggaaaggggaaaactgattgaaa 54779733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 24969308 - 24969251
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| ||||||    
T  24969308 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 24969251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 54083478 - 54083538
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacg 338  Q
    |||||||||||   ||||||| ||| |||||  |||||||||||||||||| |||||||||    
T  54083478 ttgaggcccatgactgagggatgcccagctctattgagctgtttgcaccccctcagggacg 54083538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 4977335 - 4977484
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4977335 acaaaaactcccaaaacagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaac 4977434  T
Q  101 attcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4977435 attcaacaaacagtgttgttttggacaggggaaaaccgattgaaatttga 4977484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 5316335 - 5316186
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaac 100  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5316335 acaaaaactcccaaaactgtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaac 5316236  T
Q  101 attcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  5316235 attcaacaaacggtgttattttggaaaggggaaaaccaattgaaatttga 5316186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 21741383 - 21741542
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatc----------aatctctattttag 90  Q
    |||||||||  ||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||          ||||||||||||||    
T  21741383 acaaaaactttcaatacagtaaatatgcagaaatcaattattactaattatgttaataatcaaccaaatctctatcaatctttatcaatctctattttag 21741482  T
Q  91 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21741483 caatttcaacattcaacaaacagtgttgttttgaaaaggggaaaaccgattgaaatttga 21741542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 50881244 - 50881085
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaat----------ctctatcaatctctattttag 90  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||          || ||||||||||||||||||    
T  50881244 acaaaaactctcaaaatagtaaatatgtagaaattaattattactaattatgttaataatcaaccaaatttttatcaatctttatcaatctctattttag 50881145  T
Q  91 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  50881144 caatttcaacattcaacaaacagtattgttttgaaaaggggaaaaccgattgaaatttga 50881085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 50881060 - 50880975
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  50881060 caaatcactatcaatctctattttagcaatttcaacattcaacaaacagtattgttttgaaaaggggaaaaccgattgaaatttga 50880975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 5315942 - 5315872
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  5315942 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 5315872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 14146271 - 14146205
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  14146271 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 14146205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 44655604 - 44655539
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  44655604 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 44655539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 50880736 - 50880630
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatatt 247  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||          |||||||||||||||||||    
T  50880736 tgatggaatggaagaaaattggtgatgagagcgaggaaacgcgtttcaacttttgtcagggaatgaaataa----ttgtttttattggaggatatatatt 50880641  T
Q  248 atactgggtat 258  Q
    ||||| |||||    
T  50880640 atactaggtat 50880630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 27906949 - 27907015
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  27906949 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctgt 27907015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 41697279 - 41697345
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  41697279 ttgatgcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 41697345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 3406389 - 3406322
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  3406389 ttgaggcccatccttgggggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctgt 3406322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 3440431 - 3440498
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  3440431 ttgaggcccatccttgggggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctgt 3440498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 6888535 - 6888473
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcc 340  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||    
T  6888535 ttgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgcc 6888473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 4977496 - 4977552
Alignment:
Q  94 tttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  4977496 tttcaacattcaacaaacaatgttgttttggacaggggaaaaccgattgaaatttga 4977552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 16140026 - 16139959
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||||    
T  16140026 ttgagacccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaaggacgcccctgt 16139959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 6771762 - 6771704
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggga 336  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||    
T  6771762 ttgaggcccatccttaagggaggcccagctcgtttgagctgtttgcaccccctcaggga 6771704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 4977577 - 4977618
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4977577 caaatctctatcaatctctattttagcaatttcaacattcaa 4977618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 10912094 - 10912160
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||  ||||||| ||||||||||||||||| ||||||| |||||| || |||||    
T  10912094 ttgaggcccatccttggaggaggcccagctcgtttgagctgttcgcaccccctcagggccggccctg 10912160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 50880614 - 50880568
Alignment:
Q  298 aggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  50880614 aggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 50880568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 50880950 - 50880909
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  50880950 caaatcactatcaatctctattttagcaatttcaacattcaa 50880909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 5316091 - 5316053
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  5316091 caaacagtgttgttttggaaaggggaaaactgattgaaa 5316053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 21741637 - 21741675
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  21741637 caaacagtgttgttttggaaaggggaaaactgattgaaa 21741675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 23181777 - 23181711
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||| ||| ||| |||| |||||| |||||||||||||||||| |||||| || |||||    
T  23181777 ttgaggcccatcattgggggtggcccagctcggttgagctgtttgcaccccctcagggccggccctg 23181711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 5316153 - 5316120
Alignment:
Q  73 tatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||||||||||    
T  5316153 tatcaatctctattttagcaatttcaacattcaa 5316120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 23182288 - 23182247
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  23182288 caaatctctatcaatctctattttagggatttcaacattcaa 23182247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 6494507 - 6494435
Alignment:
Q  352 tcaataacctccacctccacttagccaaaagactaagattcaccaccctaacgtccctcaccccaagaccacc 424  Q
    ||||||||||||||||||| |||||||| | ||||| ||| || ||||| |  || |||||||||||||||||    
T  6494507 tcaataacctccacctccatttagccaacaaactaacattaacaacccttatatctctcaccccaagaccacc 6494435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 13913716 - 13913776
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacg 338  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| |||||||||    
T  13913716 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacg 13913776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 40502024 - 40502084
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacg 338  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| |||||||||    
T  40502024 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacg 40502084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 4977647 - 4977685
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  4977647 caaacaatgttgttttggaaaggggaaaaccaattgaaa 4977685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 5027982 - 5028024
Alignment:
Q  286 catccttgagggaggcctagctcgtttgagctgtttgcacccc 328  Q
    |||||||| |||||||| |||||| ||||||||||||||||||    
T  5027982 catccttgggggaggcccagctcggttgagctgtttgcacccc 5028024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 1367111 - 1367168
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| ||||||    
T  1367111 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 1367168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 21741575 - 21741608
Alignment:
Q  73 tatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||| ||||||||||||||||||||||||    
T  21741575 tatcaatctttattttagcaatttcaacattcaa 21741608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 23285386 - 23285539
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23285386 acaaaaactcccaaaacagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaac 23285485  T
Q  101 attc----aacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23285486 attcaacaaacaaacagtgttgttttggaaaggggaaaatcgattgaaatttga 23285539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 3 - 150
Target Start/End: Complemental strand, 27078767 - 27078620
Alignment:
Q  3 aaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaacat 102  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  27078767 aaaaactcccaaaacagtaaatatgcagaaatcaattattactaattcagttaataatcaaccaaatctctatcaatctctatttgagcaattttaacat 27078668  T
Q  103 tcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||    
T  27078667 tcaacaaacagtgttgttttgaaaaggggaaaaccgattgtaatttga 27078620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 30853855 - 30853696
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatct----------ctattttag 90  Q
    |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||          |||||||||    
T  30853855 acaaaaactcccaaaacagtaaatatgcataaatcaattattattaattctgttaataatcaaccaaatctctatcaatctttatcaatctctattttag 30853756  T
Q  91 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30853755 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 30853696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 22986940 - 22987098
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctctat---------tttagc 91  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| |||         |||| |    
T  22986940 acaaaaactcccaaaacagtaaatatgcagaaatcaattattaataattgtgttaataatcaatcaaatctctatcaatctttatcaatctctatttatc 22987039  T
Q  92 aatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22987040 aatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 22987098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 15480229 - 15480295
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  15480229 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 15480295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 19523159 - 19523093
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  19523159 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 19523093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 344
Target Start/End: Complemental strand, 30853453 - 30853266
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatatt 247  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||          |||||||||||||||||||    
T  30853453 tgatggaatggaagaaaattggtgatgagagcaaggaaacgcgtttcaacttttgtgagggaatgaaataa--ttttttttttattggaggatatatatt 30853356  T
Q  248 -atactgggtatnnnnnnnnnnnnnnnnnnnttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
     |||||||||||                   |||||| |||||||||| ||||||| ||||||||||||||||||||||||| | |||||||||||||    
T  30853355 aatactgggtat--------aaaaaaaaaaattgaggtccatccttgaaggaggcccagctcgtttgagctgtttgcaccccctaagggacgcccctg 30853266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 31881590 - 31881656
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  31881590 ttgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 31881656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 36188019 - 36188082
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgccc 341  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||    
T  36188019 ttgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgccc 36188082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 34756615 - 34756676
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcc 340  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||    
T  34756615 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggaacgcc 34756676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 16592845 - 16592911
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||| | ||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  16592845 ttgaggcccatccttaaaggaggtccagctcgtttgagctgtttgcaccccctcagggacgcccctg 16592911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 22987470 - 22987534
Alignment:
Q  281 aggcccatccttgagggaggcctagctcgtttgagctgtttgca-ccccttcagggacgcccctg 344  Q
    ||||||||| |||||||||||| ||||||||||||||||||||| |||| |||||||||||||||    
T  22987470 aggcccatctttgagggaggcccagctcgtttgagctgtttgcacccccctcagggacgcccctg 22987534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 2274864 - 2274798
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||| |||||||||||||||||| | ||| ||||||||||||||||||| ||||| |||||||||    
T  2274864 ttgaggtccatccttgagggaggcccaactcatttgagctgtttgcaccccctcaggaacgcccctg 2274798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 16592493 - 16592534
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16592493 caaatctctatcaatctctattttagcaatttcaacattcaa 16592534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 22987123 - 22987164
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22987123 caaatctctatcaatctctattttagcaatttcaacattcaa 22987164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 23285564 - 23285605
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23285564 caaatctctatcaatctctattttagcaatttcaacattcaa 23285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 27078595 - 27078554
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27078595 caaatctctatcaatctctattttagcaatttcaacattcaa 27078554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 16592742 - 16592831
Alignment:
Q  169 gtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatattatactgggtat 258  Q
    ||||| |||| |||||||||||||| ||||||||||| ||||||||||||          ||||||||||||||||||||| ||||||||    
T  16592742 gtgataagagtgaggaaacgcgtttcaacttttgtgagggaatgaaataattttttttttttattggaggatatatattatgctgggtat 16592831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 23285634 - 23285672
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  23285634 caaacagtgttgttttggaaaggggaaaactgattgaaa 23285672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 31194767 - 31194833
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||| |||||| || ||||||||| |||||||||| | || || |||||||||    
T  31194767 ttgaggcccatccttgagagaggcccagttcgtttgagttgtttgcacctcctctggaacgcccctg 31194833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 22987344 - 22987407
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagc-gaggaaacgcgttttaacttttgtgaaggaatg 212  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||| ||||||    
T  22987344 tgatggaatggaag-aaatcggtgatgagagcagaggaaacgcg-tttagcttttgtgatggaatg 22987407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 30853671 - 30853631
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  30853671 caaatctctatcaatctcta-tttagcaatttcaacattcaa 30853631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 27078525 - 27078486
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaat 146  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  27078525 caaactgtgttgttttggaaaggggaaaactgattgaaat 27078486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 16199026 - 16199092
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| |||||| ||| ||||    
T  16199026 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgcgcctg 16199092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 16592563 - 16592601
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  16592563 caaacagtgttgttttgaaaaggggaaaactgattgaaa 16592601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 16799556 - 16799606
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcacccc 328  Q
    |||||||||||   |||||||||||||||||  ||||||||||||||||||    
T  16799556 ttgaggcccatgactgagggaggcctagctctattgagctgtttgcacccc 16799606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 22987193 - 22987231
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  22987193 caaacagtattgttttggaaaggggaaaactgattgaaa 22987231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 258
Target Start/End: Original strand, 31881547 - 31881576
Alignment:
Q  229 ttattggaggatatatattatactgggtat 258  Q
    ||||||||||||||||||||||||||||||    
T  31881547 ttattggaggatatatattatactgggtat 31881576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 27923951 - 27923891
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacg 338  Q
    |||||||||||   ||||||||| | |||||  |||||||||||||||||| |||||||||    
T  27923951 ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctcagggacg 27923891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 19740698 - 19740856
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctctat---------tttagc 91  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         ||||||    
T  19740698 acaaaaactcccaaaacagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctttatcaatctctatttagc 19740797  T
Q  92 aatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19740798 aatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 19740856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 13727650 - 13727716
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  13727650 tgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgt 13727716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 21479349 - 21479284
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  21479349 tgaggcccatccttgagggaggcccagctcgttttagctgtttgcaccccctcagggacgcccctg 21479284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 23070889 - 23070953
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccc 342  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  23070889 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccc 23070953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 19741223 - 19741290
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||    
T  19741223 ttgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgtccctgt 19741290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 12083640 - 12083706
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  12083640 ttgaggcccatccttgaggaaggcccagctcgtttgagctgtttgcaccccctcaaggacgcccctg 12083706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 21280394 - 21280336
Alignment:
Q  283 gcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgccc 341  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  21280394 gcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgccc 21280336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 24711142 - 24711208
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  24711142 ttgaggcccatccttgggggaggcccagcttgtttgagctgtttgcaccccctcagggacgcccctg 24711208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 27314773 - 27314830
Alignment:
Q  287 atccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  27314773 atccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 27314830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 1156017 - 1156084
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||  |||||||||    
T  1156017 ttgaggcccatccttaagggagacctagctcgtttgagctgtttgcaccccctcaggagcgcccctgt 1156084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 30832667 - 30832732
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||    
T  30832667 ttgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccc-tcaaggacgcccctg 30832732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 33773964 - 33773900
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||    
T  33773964 tgaggcccatccttgagggaggcccagctcatttgag-tgtttgcaccccctcagggacgcccctg 33773900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 27579084 - 27579141
Alignment:
Q  287 atccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||| ||||||||||||||| ||||||||| | |||||||||||||    
T  27579084 atccttgagggaggcccagctcgtttgagctggttgcacccccttagggacgcccctg 27579141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 19740881 - 19740922
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  19740881 caaatctctatctatctctattttaacaatttcaacattcaa 19740922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 19740951 - 19740989
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  19740951 caaacagtgttgttttggaaagggaaaaactgattgaaa 19740989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 19987032 - 19986982
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcacccc 328  Q
    |||||||||||  |||||||||||| |||||  ||||||||||||||||||    
T  19987032 ttgaggcccataattgagggaggcccagctctgttgagctgtttgcacccc 19986982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 11081684 - 11081733
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcacccc 328  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||    
T  11081684 tgaggcccatgccttagggaggcctagctccattgagctgtttgcacccc 11081733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 17353825 - 17353768
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| ||||||    
T  17353825 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 17353768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 27788922 - 27788979
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| ||||||    
T  27788922 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 27788979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 34693726 - 34693567
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatct----------ctattttag 90  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||          |||||||||    
T  34693726 acaaaaactcccaaaacagtaaatatgcagaaatcaattattaccaattctgttaataatcaaccaaatctctatcaatctttatcaatctctattttag 34693627  T
Q  91 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34693626 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 34693567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 34716138 - 34715979
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatct----------ctattttag 90  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||          |||||||||    
T  34716138 acaaaaactcccaaaacagtaaatatgcagaaatcaattattaccaattctgttaataatcaaccaaatctctatcaatctttatcaatctctattttag 34716039  T
Q  91 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34716038 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 34715979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 29940109 - 29940213
Alignment:
Q  46 aattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29940109 aattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaacattcaacaaacagagttgttttggaaaggggaaaaccgattgaaa 29940208  T
Q  146 tttga 150  Q
    |||||    
T  29940209 tttga 29940213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40445488 - 40445379
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaac 100  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40445488 acaaaaactcccaaaacagtaaatatgcagaaattaattattactaattttgttaataatcaaccaaatctctatcaatctctattttagcaatttcaac 40445389  T
Q  101 attcaacaaa 110  Q
    ||||||||||    
T  40445388 attcaacaaa 40445379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 345 - 435
Target Start/End: Complemental strand, 44692194 - 44692104
Alignment:
Q  345 tcctcagtcaataacctccacctccacttagccaaaagactaagattcaccaccctaacgtccctcaccccaagaccaccgttcccctttg 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44692194 tcctcagtcaataacctccacctccacttagccaaaagactaagattcaccaccctaacgtccctcaccccaagaccaccgttcccctttg 44692104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 345
Target Start/End: Complemental strand, 34693330 - 34693146
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatatt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||          |||||||||| ||||||||    
T  34693330 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa---tttttttttattggagg-tatatatt 34693235  T
Q  248 atactgggtatnnnnnnnnnnnnnnnnnnnttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    |||||||||||                    |||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||    
T  34693234 atactgggtataaaaaaaatta---------tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgcccctgt 34693146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 345
Target Start/End: Complemental strand, 34715742 - 34715558
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatatt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||          |||||||||| ||||||||    
T  34715742 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa---tttttttttattggagg-tatatatt 34715647  T
Q  248 atactgggtatnnnnnnnnnnnnnnnnnnnttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    |||||||||||                    |||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||    
T  34715646 atactgggtataaaaaaaatta---------tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcagggacgcccctgt 34715558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 3155068 - 3155003
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  3155068 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 3155003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 7162743 - 7162675
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgtc 346  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  7162743 ttgaggcccatccttgtgggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgtc 7162675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 254
Target Start/End: Original strand, 5952830 - 5952933
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatatt 247  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||          |||||||||||||||||||    
T  5952830 tgatggaatggaagaaaattggtgatgagagcaaggaaacgcgtttcaacttttgtgagggaatgaaataa---tttttttttattggaggatatatatt 5952926  T
Q  248 atactgg 254  Q
    |||||||    
T  5952927 atactgg 5952933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 6964857 - 6964794
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccc 342  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  6964857 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccc 6964794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 12337689 - 12337755
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  12337689 ttgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctcagggacgcccctg 12337755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 4505744 - 4505679
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  4505744 tgaggcccatcattgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 4505679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 3952965 - 3952899
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||| ||||||    
T  3952965 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagagacacccctg 3952899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 343
Target Start/End: Complemental strand, 40636130 - 40635963
Alignment:
Q  164 aatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatattatactgggtatnnnnn 263  Q
    |||||||||| |||| |||||||||||||||||||||||||| ||||||||||||          |||||| |||||||||||||||||||||||         
T  40636130 aatcggtgataagagtgaggaaacgcgttttaacttttgtgagggaatgaaataa---tttttttttattgaaggatatatattatactgggtataaaaa 40636034  T
Q  264 nnnnnnnnnnnnnnttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccct 343  Q
                  |||| |||||||||||||||||||| | ||||||||||||||||||||||| | ||||||||||||    
T  40636033 aaaat---------ttgaagcccatccttgagggaggcccaactcgtttgagctgtttgcacccccttagggacgcccct 40635963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 281 - 344
Target Start/End: Complemental strand, 3399572 - 3399509
Alignment:
Q  281 aggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||||| | | ||||||||||||||||||||||| ||| |||||||||||    
T  3399572 aggcccatccttgagggaggtccaactcgtttgagctgtttgcaccccctcaaggacgcccctg 3399509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 29940238 - 29940279
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29940238 caaatctctatcaatctctattttagcaatttcaacattcaa 29940279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 34715954 - 34715913
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34715954 caaatctctatcaatctctattttagcaatttcaacattcaa 34715913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 34693541 - 34693501
Alignment:
Q  66 aaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34693541 aaatctctatcaatctctattttagcaatttcaacattcaa 34693501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 41213928 - 41213994
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||| ||||||| || ||||||||| ||||||||||||||| ||| ||| |||||||    
T  41213928 ttgaggcccatcctcgagggagacccagctcgtttaagctgtttgcaccccctcaaggatgcccctg 41213994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 8907330 - 8907391
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcc 340  Q
    |||| |||||| |||||||||| | |||| |||||||||||||||||||| |||||||||||    
T  8907330 tgagacccatctttgagggaggtccagcttgtttgagctgtttgcaccccctcagggacgcc 8907391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 5952949 - 5952993
Alignment:
Q  297 gaggcctagctcgtttgagctgtttgcaccccttcagggacgcccc 342  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||    
T  5952949 gaggcccagctcgtttgagctgtttgcacccc-tcagggacgcccc 5952993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 27506975 - 27507035
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacg 338  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| |||||||||    
T  27506975 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacg 27507035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 26715997 - 26715940
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| ||||||    
T  26715997 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 26715940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 9045898 - 9045842
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagg 334  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| |||||    
T  9045898 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagg 9045842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 24410302 - 24410242
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacg 338  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| | |||||||    
T  24410302 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccccttagggacg 24410242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 3954346 - 3954505
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatc----------aatctctattttag 90  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||          ||||||||||||||    
T  3954346 acaaaaactcccaaaacagtaaatattcagaaatcaattattactacttctgttaataatcaaccaaatctctatcaatctttatcaatctctattttag 3954445  T
Q  91 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3954446 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 3954505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 8073597 - 8073701
Alignment:
Q  46 aattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaa 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8073597 aattctgttaataatcaaccaaatctctatcaatctctattttagcaatttcaacattcaacaaacagtgttgttttagaaaggggaaaaccgattgaaa 8073696  T
Q  146 tttga 150  Q
    |||||    
T  8073697 tttga 8073701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 148 - 343
Target Start/End: Original strand, 3954735 - 3954917
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatatt 247  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||          |||||||||||||||||||    
T  3954735 tgatggaatggaagaaaatcggtgatgagagcgaggaaacatgtttcaacttttgtgaaggaatgaaataa----ctttttttattggaggatatatatt 3954830  T
Q  248 atactgggtatnnnnnnnnnnnnnnnnnnnttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccct 343  Q
    ||||| |||||                   |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  3954831 atactaggtat---------aattttttttttgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccct 3954917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 38681348 - 38681414
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  38681348 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgt 38681414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 36716276 - 36716341
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  36716276 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 36716341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 50258734 - 50258800
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||    
T  50258734 ttgaggcccatccttgagggaggcccagctcatttgagctgtttgcaccccctcagggacgcccctg 50258800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 27078819 - 27078884
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  27078819 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggaacgcccctg 27078884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 27084616 - 27084681
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  27084616 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggaacgcccctg 27084681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 13795253 - 13795187
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || ||| |||||||||||    
T  13795253 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacgccctcaaggacgcccctg 13795187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 42098764 - 42098698
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||| |||||||| | ||||||||||||||||||||||| |||||||||||||||    
T  42098764 ttgaggcccatccttgtgggaggcccaactcgtttgagctgtttgcaccccctcagggacgcccctg 42098698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 47467647 - 47467582
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  47467647 ttgaggcccatccttgagggaggctcagctcgtttgagctgtttgcacccc-tcagggacgcccctg 47467582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 54619454 - 54619511
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggga 336  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  54619454 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggga 54619511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 36605911 - 36605860
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcacccctt 330  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36605911 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccctt 36605860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 21582734 - 21582668
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |||| ||||||||||    
T  21582734 ttgaggcccatccttaagggatgcccagctcgtttgagctgtttgcaccccctcagagacgcccctg 21582668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 53149457 - 53149523
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||||| | |||||||||||||    
T  53149457 ttgaggcccatccttggtggaggcccagctcgtttgagctgtttgcaccccctgagggacgcccctg 53149523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 18372201 - 18372109
Alignment:
Q  163 aaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatattatactgggtat 258  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||          ||||||||||||||||||||||||| ||||    
T  18372201 aaatcggtgatgagagcgaggaaacgcatttcaacttttgtgagggaatgaaataa---tttttttttattggaggatatatattatactgagtat 18372109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 8073726 - 8073767
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8073726 caaatctctatcaatctctattttagcaatttcaacattcaa 8073767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 344
Target Start/End: Complemental strand, 18372095 - 18372033
Alignment:
Q  281 aggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||| || ||||||||||| ||||||||||||| |||| ||||||||||    
T  18372095 aggcccatccttgagggagccccagctcgtttgaactgtttgcacccc-tcagagacgcccctg 18372033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 344
Target Start/End: Original strand, 29620618 - 29620665
Alignment:
Q  297 gaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||    
T  29620618 gaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 29620665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 1148354 - 1148411
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    |||| ||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||    
T  1148354 ttgaagcccatccttgggggaggcccagctcgtttgagctgttcgcaccccctcaggg 1148411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 3954530 - 3954571
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  3954530 caaatctctatcaatctctattttaacaatttcaacattcaa 3954571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 3954600 - 3954643
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||||||||| |||||||| |||||||| ||||    
T  3954600 caaacagtgttgttttggaaatgggaaaactgattgaaacttga 3954643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 48157005 - 48156951
Alignment:
Q  281 aggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    ||||||||  |||||||||||| |||||  |||||||||||||||||| ||||||    
T  48157005 aggcccatgattgagggaggcccagctctgttgagctgtttgcaccccctcaggg 48156951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 9878919 - 9878976
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    |||||||||||  || ||||||||| |||||  |||||||||||||||||| ||||||    
T  9878919 ttgaggcccatgattaagggaggcccagctctgttgagctgtttgcaccccctcaggg 9878976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 34290874 - 34290931
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    ||||||||||| | ||||||||||| | |||  |||||||||||||||||| ||||||    
T  34290874 ttgaggcccatgcctgagggaggcccaactctgttgagctgtttgcaccccctcaggg 34290931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 53507117 - 53507174
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| ||||||    
T  53507117 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 53507174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 43207474 - 43207530
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagg 334  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| |||||    
T  43207474 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagg 43207530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 50939468 - 50939528
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacg 338  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||| | |||||||||    
T  50939468 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggacg 50939528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 7e-50; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 41878755 - 41878596
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatcaattattactaattctgttaataatcaaccaaatctctatcaatct----------ctattttag 90  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||          |||||||||    
T  41878755 acaaaaattcccaaaacaataaatatgcagaaatcaattattactatttcggttaataatcaaccaaatctctatcaatctttatcaatctctattttag 41878656  T
Q  91 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41878655 caatttcaacattcaacaaacagtgttgttttggaaaggggaaaaccgattgaaaattga 41878596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 2952473 - 2952539
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  2952473 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgt 2952539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 20003876 - 20003942
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  20003876 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 20003942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 5860996 - 5861061
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  5860996 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 5861061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 30883175 - 30883109
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  30883175 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccactcagggacgcccctgt 30883109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 3048774 - 3048839
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||  |||||||||    
T  3048774 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagaaacgcccctg 3048839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 41878354 - 41878246
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcgaggaaacgcgttttaacttttgtgaaggaatgaaataagnnnnnnnnnttattggaggatatatatt 247  Q
    |||||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||||| ||||||||||||          |||||||||||||||||||    
T  41878354 tgatggaaaggaagaaaatcgatgatgagag-gaggaaatgcgtttcaacttttgtgagggaatgaaataa-tttatttttttattggaggatatatatt 41878257  T
Q  248 atactgggtat 258  Q
    |||||||||||    
T  41878256 atactgggtat 41878246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 37430301 - 37430367
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||| ||| ||||| | ||||||||||||||||||||||| ||| |||||||||||    
T  37430301 ttgaggcccatccttaaggaaggcccaactcgtttgagctgtttgcaccccctcaaggacgcccctg 37430367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 41878231 - 41878167
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccc 342  Q
    ||||||| ||||||||||||||||  | ||||||||||||||||||||||| ||| |||||||||    
T  41878231 ttgaggctcatccttgagggaggctcaactcgtttgagctgtttgcaccccctcaaggacgcccc 41878167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 41878571 - 41878530
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  41878571 caaatctctatcaatctctattttaacaatttcaacattcaa 41878530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 45472257 - 45472201
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagg 334  Q
    |||||||||||||||| ||| |||| |||||| |||||||||||||||||| |||||    
T  45472257 ttgaggcccatccttgggggtggcccagctcggttgagctgtttgcaccccctcagg 45472201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 45472668 - 45472627
Alignment:
Q  65 caaatctctatcaatctctattttagcaatttcaacattcaa 106  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  45472668 caaatctctatcaatctctattttagagatttcaacattcaa 45472627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 42600650 - 42600590
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacg 338  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| |||||||||    
T  42600650 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacg 42600590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 41878501 - 41878458
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaatttga 150  Q
    |||||| ||||||||||||||||||||||| |||||||| ||||    
T  41878501 caaacaatgttgttttggaaaggggaaaactgattgaaacttga 41878458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 45472598 - 45472559
Alignment:
Q  107 caaacagtgttgttttggaaaggggaaaaccgattgaaat 146  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  45472598 caaatagtgttgttttggaaaggggaaaaccaattgaaat 45472559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 45472731 - 45472696
Alignment:
Q  1 acaaaaactcccaaaatagtaaatatgcagaaatca 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  45472731 acaaaaactcccaaaacagtaaatatgcagaaatca 45472696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 1077 - 1011
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  1077 ttgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 1011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 12596429 - 12596495
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  12596429 ttgagggccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 12596495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 18777019 - 18777084
Alignment:
Q  279 tgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  18777019 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacctcctcagggacgcccctg 18777084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 28749647 - 28749582
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccct 343  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||    
T  28749647 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagagacgcccct 28749582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 10955444 - 10955378
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||||||| ||| |||||||||||    
T  10955444 ttgaggcccatccttgagggaggcccaactcgtttgagctatttgcaccccctcaaggacgcccctg 10955378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 29076998 - 29076929
Alignment:
Q  278 ttgaggcccatccttgaggg--aggcctagctcgtttgagctgtttgcaccccttcagggacgcccctgt 345  Q
    ||||||||||||||||||||  |||||  |||||||| ||||||||||||||| ||||| ||||| ||||    
T  29076998 ttgaggcccatccttgagggggaggccctgctcgtttaagctgtttgcaccccctcaggaacgcctctgt 29076929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 28749693 - 28749664
Alignment:
Q  229 ttattggaggatatatattatactgggtat 258  Q
    ||||||||||||||||||||||||||||||    
T  28749693 ttattggaggatatatattatactgggtat 28749664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 29077116 - 29077053
Alignment:
Q  148 tgatggaatggaagaaaatcggtgatgagagcga-ggaaacgcgttttaacttttgtgaaggaatg 212  Q
    ||||||||||||||||  |||||||||||||| | |||||||||||| ||||||||||| ||||||    
T  29077116 tgatggaatggaagaat-tcggtgatgagagcaaaggaaacgcgttt-aacttttgtgatggaatg 29077053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 47985202 - 47985259
Alignment:
Q  278 ttgaggcccatccttgagggaggcctagctcgtttgagctgtttgcaccccttcaggg 335  Q
    |||||||||||   ||||||||||| |||||  |||||||||||||||||| ||||||    
T  47985202 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggg 47985259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 181480 - 181435
Alignment:
Q  299 ggcctagctcgtttgagctgtttgcaccccttcagggacgcccctg 344  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||    
T  181480 ggcccagctcgtttgagctgtttgcaccccctcagggacgcccctg 181435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University