View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17134_low_39 (Length: 420)

Name: NF17134_low_39
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17134_low_39
NF17134_low_39
[»] chr8 (22 HSPs)
chr8 (1-406)||(7460738-7461142)
chr8 (221-406)||(6353947-6354132)
chr8 (235-364)||(6290726-6290855)
chr8 (233-393)||(6364714-6364877)
chr8 (235-364)||(6275978-6276107)
chr8 (235-364)||(6322953-6323082)
chr8 (235-364)||(6333403-6333532)
chr8 (235-361)||(6425506-6425632)
chr8 (1-77)||(6353666-6353742)
chr8 (1-73)||(6290574-6290646)
chr8 (1-75)||(6364539-6364613)
chr8 (1-76)||(6371370-6371445)
chr8 (235-365)||(6392437-6392567)
chr8 (235-365)||(6411577-6411707)
chr8 (1-73)||(6322683-6322755)
chr8 (1-73)||(6333250-6333322)
chr8 (1-81)||(6425356-6425436)
chr8 (235-366)||(6371533-6371664)
chr8 (1-75)||(6392162-6392236)
chr8 (1-73)||(6275822-6275894)
chr8 (1-77)||(6411326-6411402)
chr8 (233-355)||(6265475-6265597)
[»] chr5 (2 HSPs)
chr5 (14-72)||(9603035-9603093)
chr5 (243-307)||(9602895-9602959)
[»] chr2 (2 HSPs)
chr2 (236-355)||(42694694-42694813)
chr2 (312-340)||(42686801-42686829)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 7460738 - 7461142
Alignment:
Q  1 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtctacatatataatgtcaagttttggtgtta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7460738 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtctacatatataatgtcaagttttggtgtta 7460837  T
Q  101 accgactggttctcagnnnnnnnngggtcctgataattcggagttctgggaggtaagtaaagtttgaaacatttctaaaactaattactaatatttgtcg 200  Q
    ||||||||||||||||        |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7460838 accgactggttctcagaaaaaag-gggtcctgataatttggagttccgggaggtaagtaaagtttgaaacatttctaaaactaattactaatatttgtcg 7460936  T
Q  201 ttacaaaaaatagcaagctgtagaatttttaatcttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgc 300  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7460937 ttacaaaaaatagcaagctatagaatttttattcttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgtgaatccatgagttgc 7461036  T
Q  301 aaacaaagatgatggttccatggtttggaacatcttcaagtgtcaaactcacaagtaagaattcaccatgcatatagttatcaatataaaaagattcagg 400  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | | ||    
T  7461037 aaacaaagttgatggttccatggtttggaacatcttcaagtgtcaaactcacaaggaagaattcaccttgcatatagttatcaatataaaaagctcctgg 7461136  T
Q  401 aattcc 406  Q
    ||||||    
T  7461137 aattcc 7461142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 221 - 406
Target Start/End: Original strand, 6353947 - 6354132
Alignment:
Q  221 tagaatttttaatcttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaagatgatggttcca 320  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||  ||||| ||||    
T  6353947 tagaatttttattcttaccttgttggcaaagaagatgcggtcggttttgtactttttagaattgtaaatccatgagttgcagacaaagtggatggatcca 6354046  T
Q  321 tggtttggaacatcttcaagtgtcaaactcacaagtaagaattcaccatgcatatagttatcaatataaaaagattcaggaattcc 406  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| || ||||||| | | ||||||||    
T  6354047 tggtttggaacatcttcaagtgtcaaactcacaaggaagaattcaccttgcataaaattatcgatgtaaaaagctccgggaattcc 6354132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 235 - 364
Target Start/End: Original strand, 6290726 - 6290855
Alignment:
Q  235 ttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaagatgatggttccatggtttggaacatc 334  Q
    ||||||||||||||||||||||||| || |||||||| |||| || ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  6290726 ttaccttgttggcaaagaagatgcgttcagttttgtagttttgagcattgtaaatccatgagttgcaaacaaagttgatggttccatggttgggaacatc 6290825  T
Q  335 ttcaagtgtcaaactcacaagtaagaattc 364  Q
    |||||| |||||||| ||||| ||||||||    
T  6290826 ttcaagggtcaaacttacaagaaagaattc 6290855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 233 - 393
Target Start/End: Original strand, 6364714 - 6364877
Alignment:
Q  233 tcttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaagatgatggttccatggtttggaaca 332  Q
    ||||||||||||||||||||| ||||| |  |||||||| |||||||  |||| || ||||||||||||||||||| |||||||||||||||||||||||    
T  6364714 tcttaccttgttggcaaagaaaatgcgtttagttttgtaatttttagcgttgtaaacccatgagttgcaaacaaagttgatggttccatggtttggaaca 6364813  T
Q  333 tcttcaagtgtcaaactcacaagtaagaattcacca---tgcatatagttatcaatataaaaag 393  Q
    |||||||| ||||| || ||||| ||||||||||||   |||| ||| || |||||||||||||    
T  6364814 tcttcaagagtcaagctgacaaggaagaattcaccaccttgcagataattctcaatataaaaag 6364877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 235 - 364
Target Start/End: Original strand, 6275978 - 6276107
Alignment:
Q  235 ttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaagatgatggttccatggtttggaacatc 334  Q
    ||||||||||||||||||| ||||| || ||||||||||||  | |||||| |||||||||||||||||||||| |||||||||||||||| |||| |||    
T  6275978 ttaccttgttggcaaagaaaatgcgttcagttttgtactttcgacaattgtaaatccatgagttgcaaacaaagttgatggttccatggttaggaatatc 6276077  T
Q  335 ttcaagtgtcaaactcacaagtaagaattc 364  Q
    ||||||||| ||||| ||||| ||||||||    
T  6276078 ttcaagtgttaaacttacaagaaagaattc 6276107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 235 - 364
Target Start/End: Original strand, 6322953 - 6323082
Alignment:
Q  235 ttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaagatgatggttccatggtttggaacatc 334  Q
    ||||||||||||| ||||||||||| | |||||| ||||| | || | ||| ||||||||||||||| |||||| ||||||||||||||||||||| |||    
T  6322953 ttaccttgttggcgaagaagatgcgtttcgttttatacttgtcagcactgtaaatccatgagttgcatacaaagttgatggttccatggtttggaatatc 6323052  T
Q  335 ttcaagtgtcaaactcacaagtaagaattc 364  Q
    ||||||||||||||| ||||| ||||||||    
T  6323053 ttcaagtgtcaaacttacaaggaagaattc 6323082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 235 - 364
Target Start/End: Original strand, 6333403 - 6333532
Alignment:
Q  235 ttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaagatgatggttccatggtttggaacatc 334  Q
    |||||||||| | |||||||||||| | |||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||||||| | |||| |||    
T  6333403 ttaccttgttcgtaaagaagatgcgtttcgttttatactttttagcattgtaaatccatgagttgcaaacaaagttgatggttccatggatgggaatatc 6333502  T
Q  335 ttcaagtgtcaaactcacaagtaagaattc 364  Q
    |||||| |||||||| ||||| ||||||||    
T  6333503 ttcaagcgtcaaacttacaaggaagaattc 6333532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 235 - 361
Target Start/End: Original strand, 6425506 - 6425632
Alignment:
Q  235 ttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaagatgatggttccatggtttggaacatc 334  Q
    |||||||||| || || |||||||||||  ||||||| |||||   ||||| || ||| ||||||||||||||| |||||||||||||||||||||||||    
T  6425506 ttaccttgttagcgaaaaagatgcggtcacttttgtattttttgtcattgtaaacccaagagttgcaaacaaagttgatggttccatggtttggaacatc 6425605  T
Q  335 ttcaagtgtcaaactcacaagtaagaa 361  Q
    ||||||||||||||||||||| |||||    
T  6425606 ttcaagtgtcaaactcacaaggaagaa 6425632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6353666 - 6353742
Alignment:
Q  1 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtctacata 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  6353666 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagccggtgtttcacttggaaggtatgtctacata 6353742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6290574 - 6290646
Alignment:
Q  1 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtcta 73  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  6290574 ctcttaaagtcttcaattcttcttgtctatagtacactaatggagctggtgtttcacttggaaggtatgtcta 6290646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6364539 - 6364613
Alignment:
Q  1 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtctaca 75  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  6364539 ctcttaaagtcttcaattcttcttgtctgtagtagactaaaggagctggtgtttcacttggaaggtatgtctaca 6364613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 6371370 - 6371445
Alignment:
Q  1 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtctacat 76  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||    
T  6371370 ctcttaaagtcttcaactcttcttgtctgtagtagactaatggagctggtgtttcacttagaaggtatgtctacat 6371445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 235 - 365
Target Start/End: Original strand, 6392437 - 6392567
Alignment:
Q  235 ttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaagatgatggttccatggtttggaacatc 334  Q
    ||||||||||||||||||| ||||| || |||| |||||||| || ||||| ||||||||||||||||| |||| |  ||||| ||||| ||  ||||||    
T  6392437 ttaccttgttggcaaagaaaatgcgttcagtttggtacttttcagcattgtaaatccatgagttgcaaataaagtttgtggtttcatggctttcaacatc 6392536  T
Q  335 ttcaagtgtcaaactcacaagtaagaattca 365  Q
    |||||| |||||||||||||| |||| ||||    
T  6392537 ttcaagggtcaaactcacaaggaagatttca 6392567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 235 - 365
Target Start/End: Original strand, 6411577 - 6411707
Alignment:
Q  235 ttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaagatgatggttccatggtttggaacatc 334  Q
    ||||||||||||||||||| ||||| || |||| |||||||| || ||||| ||||||||||||||||| |||| |  ||||| ||||| ||  ||||||    
T  6411577 ttaccttgttggcaaagaaaatgcgttcagtttggtacttttcagcattgtaaatccatgagttgcaaataaagtttgtggtttcatggctttcaacatc 6411676  T
Q  335 ttcaagtgtcaaactcacaagtaagaattca 365  Q
    |||||| |||||||||||||| |||| ||||    
T  6411677 ttcaagggtcaaactcacaaggaagatttca 6411707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6322683 - 6322755
Alignment:
Q  1 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtcta 73  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||    
T  6322683 ctcttaaagtcttcaattcttcttctctatagtagactaatggagctggtgtttcacttggaaggtatgtcta 6322755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6333250 - 6333322
Alignment:
Q  1 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtcta 73  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| |||||    
T  6333250 ctcttaaagtcttcaattcttcttgtctgtagtagactaatggagctggtgtttcgcttggaaggtacgtcta 6333322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6425356 - 6425436
Alignment:
Q  1 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtctacatatata 81  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||| |||||| |||||||||||||||||||||| ||||    
T  6425356 ctcttaaagtcttcaactcttcttgtctatagtacaccaatggagccggtgtttcacttggaaggtatgtctacatttata 6425436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 366
Target Start/End: Original strand, 6371533 - 6371664
Alignment:
Q  235 ttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaagatgatggttccatggtttggaacatc 334  Q
    |||||||||||| |||||||||||| || |  |  || ||||||| ||||| |||||||||||||||   |||| ||||||||||||| |||||||||||    
T  6371533 ttaccttgttggtaaagaagatgcgctcagagtgatagtttttagcattgtaaatccatgagttgcagttaaagttgatggttccatgatttggaacatc 6371632  T
Q  335 ttcaagtgtcaaactcacaagtaagaattcac 366  Q
     | ||| |||||||||||||| |||| |||||    
T  6371633 attaagggtcaaactcacaaggaagagttcac 6371664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6392162 - 6392236
Alignment:
Q  1 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtctaca 75  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||| |||||    
T  6392162 ctcttaaagtattcaattcttcttgtctgtagtacagtaatggagctggtgtttcccttagaaggtatgcctaca 6392236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6275822 - 6275894
Alignment:
Q  1 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtcta 73  Q
    |||||||||| ||||| ||||||||||| ||||| |||||||||| ||||||| |||||||||| ||||||||    
T  6275822 ctcttaaagtgttcaactcttcttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtcta 6275894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6411326 - 6411402
Alignment:
Q  1 ctcttaaagtcttcaattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtctacata 77  Q
    ||||||||||||||||||||||||   ||||||||||||||||   ||||| |  |||||||||||||| |||||||    
T  6411326 ctcttaaagtcttcaattcttctttgatgtagtacactaatggttgtggtgcttgacttggaaggtatgcctacata 6411402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 355
Target Start/End: Original strand, 6265475 - 6265597
Alignment:
Q  233 tcttaccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaagatgatggttccatggtttggaaca 332  Q
    |||||| |||||||| ||||| || || || |||  ||| ||||| | ||||| || ||| |||||||||||||||   |||||||||  |||||| | |    
T  6265475 tcttacattgttggcgaagaaaatacgatcagttaggtagtttttcgcattgtaaacccacgagttgcaaacaaagtgaatggttccaacgtttgggata 6265574  T
Q  333 tcttcaagtgtcaaactcacaag 355  Q
    || ||||| ||||||||||||||    
T  6265575 tcatcaagagtcaaactcacaag 6265597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 9603093 - 9603035
Alignment:
Q  14 caattcttcttgtctgtagtacactaatggagctggtgttgcacttggaaggtatgtct 72  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||    
T  9603093 caattcttcttgtctgtagtagactaatggagctggtgtttgacttggaagatatgtct 9603035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 9602959 - 9602895
Alignment:
Q  243 ttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaa 307  Q
    |||| |||||||||||| ||  ||||||| |||||  |||||| ||||||||| |||||||||||    
T  9602959 ttggtaaagaagatgcgatcttttttgtagtttttgaaattgtaaatccatgaattgcaaacaaa 9602895  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 355
Target Start/End: Original strand, 42694694 - 42694813
Alignment:
Q  236 taccttgttggcaaagaagatgcggtccgttttgtactttttagaattgttaatccatgagttgcaaacaaagatgatggttccatggtttggaacatct 335  Q
    |||||| ||||||||||| ||||||||   |||||  | ||| | ||| | |||||| |||||||| ||||||  |||| ||||||| |||||||  |||    
T  42694694 taccttattggcaaagaaaatgcggtcaagtttgtggtgtttggcattataaatccaggagttgcatacaaagtagatgcttccatgatttggaatgtct 42694793  T
Q  336 tcaagtgtcaaactcacaag 355  Q
    ||||| ||||||||||||||    
T  42694794 tcaagagtcaaactcacaag 42694813  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 340
Target Start/End: Complemental strand, 42686829 - 42686801
Alignment:
Q  312 atggttccatggtttggaacatcttcaag 340  Q
    |||||||||||||||||||||||||||||    
T  42686829 atggttccatggtttggaacatcttcaag 42686801  T

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