View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_4 (Length: 752)
Name: NF17134_low_4
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 12 - 735
Target Start/End: Original strand, 41718924 - 41719647
Alignment:
| Q |
12 |
atgaacaatattcacatcatgtaacaaattaagtttcacnnnnnnnnnnnnnn--ttccactcatcatattttggaaataaaaaaccttaagtttaacct |
109 |
Q |
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| T |
41718924 |
atgaacaatattcacatcatgtaacaaattaagtttcacaacaacaaaaaaaaagttccactcatcatattttggaaataaaaaaccttaagtttaacct |
41719023 |
T |
|
| Q |
110 |
gacatgtatgaagcactgagagagacacggacaccagacacacgttgacaccggannnnnnnnngnnnnnnnttaagtaattgaatgtaatcaaaggcaa |
209 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| |
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| T |
41719024 |
gacatgtatgaagcactgagggagacacggacaccagacacacgttgacaccagatttttttttgaaaaaaattaagtaattgaatgtaatcaaaggcaa |
41719123 |
T |
|
| Q |
210 |
gttggtgtccgacatgtaacatgtcttccatca-aagtgtcagttctacatcaaaaaacacaatgaacatacagagagaaactaaattaaacatcaaact |
308 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
41719124 |
gttggtgtccgacatgtaac--gtcttccatcagaagtgtcagttctacatcaaaaaacacaatgaacatacggagagaaactaaattaaacattaaact |
41719221 |
T |
|
| Q |
309 |
acattcaacaaagctcaacgaagctgaaattagttaatttcaccgaacattacgataatgatccactagacaatgaccagaaatcaagcttcggcaaata |
408 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41719222 |
acatttaacaaagctcaacgaagctgaaattagttaatttcaccgaacattacgataatgatccactagacaatgaccagaaatcaagctttggcaaata |
41719321 |
T |
|
| Q |
409 |
acaacaatcaacatgctttgtttaactatcactcgcaaggatnnnnnnnncaagatctatgccaacatattcattatccgaaattataaattgagattgt |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41719322 |
acaacaatcaacatgctttgtttaactatcactcgcaaggataaaaaaa-caagatctatgccaacatattcattatccgaaattataaattgagattgt |
41719420 |
T |
|
| Q |
509 |
gatcggaatcgatcaccagaattcaatttcaaccaattccacaaacaaatgtcaaagtaataaaaaacaattgaaagttcaaattatcagtgaacaaaac |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41719421 |
gatcggaatcgatcaccagaattcaatttcaaccaattccacaaacaaatgtcaaagtaataaaaaacaattgaaagttcaaattatcagtgaacaaaac |
41719520 |
T |
|
| Q |
609 |
agtgtnnnnnnngttcgagaaaattacattttctttcgaatttcaacttggcgctcttttcgctcatattcttgtctaatcttcttcttctcagcttcaa |
708 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41719521 |
agcgtaaaaaaagttcgagaaaattacattttctttcgaatttcaacttggcgctcttttcgctcatattcttgtctgatcttcttcttctcagcttcaa |
41719620 |
T |
|
| Q |
709 |
ccaactgaagcttctcgatattgaatt |
735 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
41719621 |
ccaactgaagcttctcgatattgaatt |
41719647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 41718785 - 41718857
Alignment:
| Q |
65 |
ttccactcatcatattttggaaataaaaaaccttaagtttaacctgacatgtatgaagcactgagagagacacg |
138 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||| |||||| ||||||||| |||||||||||||| ||||| |
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| T |
41718785 |
ttccactcatcatattttggcaataaaaaaacttaa-tttaacttgacatgtacgaagcactgagagacacacg |
41718857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 631 - 735
Target Start/End: Complemental strand, 2418649 - 2418545
Alignment:
| Q |
631 |
attacattttctttcgaatttcaacttggcgctcttttcgctcatattcttgtctaatcttcttcttctcagcttcaaccaactgaagcttctcgatatt |
730 |
Q |
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||||||| ||||| |||| |||||||| |||||| |||||||| ||||| | ||||||||||| ||||||||||||||||| | |||||||||||| |
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| T |
2418649 |
attacatcttcttacgaacatcaacttgtttctctttgcgctcatactcttgacggatcttcttcttatcagcttcaaccaactgtaacttctcgatatt |
2418550 |
T |
|
| Q |
731 |
gaatt |
735 |
Q |
| |
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||||| |
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| T |
2418549 |
gaatt |
2418545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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