View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17134_low_41 (Length: 416)

Name: NF17134_low_41
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17134_low_41
NF17134_low_41
[»] chr8 (6 HSPs)
chr8 (77-399)||(20225556-20225876)
chr8 (39-74)||(5328513-5328548)
chr8 (39-74)||(21548443-21548478)
chr8 (39-70)||(29729212-29729243)
chr8 (41-74)||(2908040-2908073)
chr8 (41-74)||(9735792-9735825)
[»] chr7 (5 HSPs)
chr7 (77-399)||(44310068-44310388)
chr7 (39-70)||(45640038-45640069)
chr7 (40-70)||(34267498-34267528)
chr7 (40-72)||(10901736-10901768)
chr7 (39-71)||(12364840-12364872)
[»] chr5 (5 HSPs)
chr5 (39-70)||(6558894-6558925)
chr5 (39-70)||(21918145-21918176)
chr5 (40-70)||(24133049-24133079)
chr5 (39-69)||(41156422-41156452)
chr5 (41-74)||(18597497-18597530)
[»] chr4 (4 HSPs)
chr4 (39-70)||(48615418-48615449)
chr4 (39-73)||(2688185-2688219)
chr4 (40-70)||(42231605-42231635)
chr4 (40-70)||(54029646-54029676)
[»] chr3 (3 HSPs)
chr3 (39-70)||(5636745-5636776)
chr3 (40-74)||(9114100-9114134)
chr3 (40-70)||(25833915-25833945)
[»] chr2 (2 HSPs)
chr2 (40-74)||(18862341-18862375)
chr2 (41-73)||(42480196-42480228)
[»] chr1 (2 HSPs)
chr1 (40-70)||(1151852-1151882)
chr1 (40-70)||(7180561-7180591)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 77 - 399
Target Start/End: Original strand, 20225556 - 20225876
Alignment:
Q  77 ttaatttaatattgtttattgtcgctcatctctgaattagtccatgaaatgtgttaaatcaattttaaaagtttaaccttataattttaagtgacgtatc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20225556 ttaatttaatattgtttattgtcgctcatctctgaattagtccatgaaatgtgttaaatcaattttaaaagtttaaccttataattttaagtgacgtatc 20225655  T
Q  177 actaatttttgctaataactaagacttgttctttgtattaatcttttgccaagtgaggttgctcaaatatcacaaaacctcaattacaaaccattgcgta 276  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20225656 actaatttttgctaataactaagacttgttctttgtcttaatcttttgccaagtgaggttgctcaaatatcacaaaacctcaattacaaaccattgcgta 20225755  T
Q  277 attgtatatttggcatgtcgagtgtcgtcgattcaaattcatttttgctcacccatgtcgacacaacgcatataaacatcttgcacatgttgaggtctgg 376  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||  | |||| ||| |||||||  |||||||||| |||    
T  20225756 attgtatatttggcatgtcgagtgtcgac-attcaaattcatttttgctcacccatgtcgacaccgcacatagaaaaatcttgccgatgttgaggtatgg 20225854  T
Q  377 gggctgataccatacttgattta 399  Q
    ||| || |||||||||| |||||    
T  20225855 gggatg-taccatacttaattta 20225876  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 5328513 - 5328548
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacacatttt 74  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5328513 ggtcaagtagcctagtggctagagctcacacatttt 5328548  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 21548443 - 21548478
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacacatttt 74  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21548443 ggtcaagtagcctagtggctagagctcacacatttt 21548478  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Complemental strand, 29729243 - 29729212
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacaca 70  Q
    ||||||||||||||||||||||||||||||||    
T  29729243 ggtcaagtagcctagtgactagagctcacaca 29729212  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 2908040 - 2908073
Alignment:
Q  41 tcaagtagcctagtgactagagctcacacatttt 74  Q
    ||||||||||||||| ||||||||||||||||||    
T  2908040 tcaagtagcctagtggctagagctcacacatttt 2908073  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 9735825 - 9735792
Alignment:
Q  41 tcaagtagcctagtgactagagctcacacatttt 74  Q
    ||||||||| ||||||||||||||||||||||||    
T  9735825 tcaagtagcatagtgactagagctcacacatttt 9735792  T

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Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 77 - 399
Target Start/End: Original strand, 44310068 - 44310388
Alignment:
Q  77 ttaatttaatattgtttattgtcgctcatctctgaattagtccatgaaatgtgttaaatcaattttaaaagtttaaccttataattttaagtgacgtatc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44310068 ttaatttaatattgtttattgtcgctcatctctgaattagtccatgaaatgtgttaaatcaattttaaaagtttaaccttataattttaagtgacgtatc 44310167  T
Q  177 actaatttttgctaataactaagacttgttctttgtattaatcttttgccaagtgaggttgctcaaatatcacaaaacctcaattacaaaccattgcgta 276  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44310168 actaatttttgctaataactaagacttgttctttgtcttaatcttttgccaagtgaggttgctcaaatatcacaaaacctcaattacaaaccattgcgta 44310267  T
Q  277 attgtatatttggcatgtcgagtgtcgtcgattcaaattcatttttgctcacccatgtcgacacaacgcatataaacatcttgcacatgttgaggtctgg 376  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||  | |||| ||| |||||||  |||||||||| |||    
T  44310268 attgtatatttggcatgtcgagtgtcgac-attcaaattcatttttgctcacccatgtcgacaccgcacatagaaaaatcttgccgatgttgaggtatgg 44310366  T
Q  377 gggctgataccatacttgattta 399  Q
    ||| || |||||||||| |||||    
T  44310367 gggatg-taccatacttaattta 44310388  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 45640038 - 45640069
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacaca 70  Q
    ||||||||||||||||||||||||||||||||    
T  45640038 ggtcaagtagcctagtgactagagctcacaca 45640069  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 34267498 - 34267528
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  34267498 gtcaagtagcctagtgactagagctcacaca 34267528  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 10901768 - 10901736
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacacatt 72  Q
    ||||||||||||||||||| |||||||||||||    
T  10901768 gtcaagtagcctagtgactggagctcacacatt 10901736  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 12364872 - 12364840
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacacat 71  Q
    ||||||||||||||||| |||||||||||||||    
T  12364872 ggtcaagtagcctagtggctagagctcacacat 12364840  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Complemental strand, 6558925 - 6558894
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacaca 70  Q
    ||||||||||||||||||||||||||||||||    
T  6558925 ggtcaagtagcctagtgactagagctcacaca 6558894  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Complemental strand, 21918176 - 21918145
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacaca 70  Q
    ||||||||||||||||||||||||||||||||    
T  21918176 ggtcaagtagcctagtgactagagctcacaca 21918145  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 24133079 - 24133049
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  24133079 gtcaagtagcctagtgactagagctcacaca 24133049  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 41156452 - 41156422
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacac 69  Q
    |||||||||||||||||||||||||||||||    
T  41156452 ggtcaagtagcctagtgactagagctcacac 41156422  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 18597530 - 18597497
Alignment:
Q  41 tcaagtagcctagtgactagagctcacacatttt 74  Q
    ||||||||||||||| ||||||||||||||||||    
T  18597530 tcaagtagcctagtggctagagctcacacatttt 18597497  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 48615418 - 48615449
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacaca 70  Q
    ||||||||||||||||||||||||||||||||    
T  48615418 ggtcaagtagcctagtgactagagctcacaca 48615449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 2688219 - 2688185
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacacattt 73  Q
    ||||||||||||||||| |||||||||||||||||    
T  2688219 ggtcaagtagcctagtggctagagctcacacattt 2688185  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 42231635 - 42231605
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  42231635 gtcaagtagcctagtgactagagctcacaca 42231605  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 54029676 - 54029646
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  54029676 gtcaagtagcctagtgactagagctcacaca 54029646  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 5636745 - 5636776
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacaca 70  Q
    ||||||||||||||||||||||||||||||||    
T  5636745 ggtcaagtagcctagtgactagagctcacaca 5636776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 9114134 - 9114100
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacacatttt 74  Q
    ||||||||||||||||||| |||||||||||||||    
T  9114134 gtcaagtagcctagtgactggagctcacacatttt 9114100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 25833945 - 25833915
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  25833945 gtcaagtagcctagtgactagagctcacaca 25833915  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 18862375 - 18862341
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacacatttt 74  Q
    |||||||||||||||| ||||||||||||||||||    
T  18862375 gtcaagtagcctagtggctagagctcacacatttt 18862341  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 42480196 - 42480228
Alignment:
Q  41 tcaagtagcctagtgactagagctcacacattt 73  Q
    |||||||||||| ||||||||||||||||||||    
T  42480196 tcaagtagcctaatgactagagctcacacattt 42480228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 1151882 - 1151852
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  1151882 gtcaagtagcctagtgactagagctcacaca 1151852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 7180561 - 7180591
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  7180561 gtcaagtagcctagtgactagagctcacaca 7180591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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