View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_42 (Length: 415)
Name: NF17134_low_42
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 19552224 - 19551822
Alignment:
| Q |
1 |
acattttgcaacgcaaagctgaacgagttgcaagaatcgtcattattaatcggtacagcagaaacatccttattaataggtacagctgaaacatcattat |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19552224 |
acattttgcaacgcaaagctgaacgagttggcagaatcgtcgttattaatcggtacagcagaaacatccttattaatgggtacagctgaaacatcattat |
19552125 |
T |
|
| Q |
101 |
taacgggagtagccgaatgagataatgactcttcctgattgttcaaacaacttattttagaagatgtggattcaacaacaacatactgatttgtatgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
19552124 |
taacgggagtagccgaatgagataatgactcttcctgattgttcaaacaacttattttagaagatggggattcaacaacaacattctgatttgtatgtgt |
19552025 |
T |
|
| Q |
201 |
ggaggtggaggcaacagtttgagttaatgtctgttcttggttcacgacagttctgcagcagtaggggctgcaactgcaacatatcttagagtaccggaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19552024 |
ggaggtggaggcaacagtttgagttaatgtctgttcttggttcacgacagttctgcagcagtaggggctgcaactgcaacatatcttagagtaccggaag |
19551925 |
T |
|
| Q |
301 |
tagatgctcatatatcattattattataattacggtgctgctaagggggttttcgtttcactagttcaacatccataggnnnnnnncccaagatcattct |
400 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
19551924 |
tagatgctcatatatcattattatt---attacggtgctgctaagggggttttcgtttcactagttcaacatccataggtctttttcccacgatcattct |
19551828 |
T |
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| Q |
401 |
cctttg |
406 |
Q |
| |
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|||||| |
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| T |
19551827 |
cctttg |
19551822 |
T |
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