View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_47 (Length: 384)
Name: NF17134_low_47
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 5 - 370
Target Start/End: Complemental strand, 25576544 - 25576179
Alignment:
| Q |
5 |
gagcagcacagaagaagtcatctgttgttaattttatttcatgtccttccggaagttcaaggccacttttactcagaaccatgcacatttcctctataga |
104 |
Q |
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| T |
25576544 |
gagcagcaccgaagaagtcatctgttgttaattttatttcatgtccttccggaagttcaaggccacttttattcagaaccatgcacatttcctctgtaga |
25576445 |
T |
|
| Q |
105 |
tatgatggttgaacagccagaacggggagtaatatgagtttccagagttggcttctgaacttcagttggaatatcatccgccatcagtgttctaggatgc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25576444 |
tatgatggttgaacagccagaacggggagtaatatgagtttccagagttggcttctgaacttcagttggaatatcatccgccatcagtgttctaggatgc |
25576345 |
T |
|
| Q |
205 |
tgaaagcccacttcccattttacccttctgggagacaatttctctgcaataactggtttggttaaattcttattattgtcctcctgcacgtgttggtcct |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25576344 |
tgaaagcccacttcccattttacccttctgggagacaatttctctgcaataactggtttggttaaattctcattattgtcctcctgcacgtgttggtcct |
25576245 |
T |
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| Q |
305 |
ttaccgtggcatccaccgctgtagtggacactacagcttgtccatttacagcaatatctgagtcct |
370 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25576244 |
ttagcgtggcatccaccgctgtagtggacactacagcttgtccatttacagcaatatctgagtcct |
25576179 |
T |
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