View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_5 (Length: 695)
Name: NF17134_low_5
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 35551452 - 35550959
Alignment:
| Q |
1 |
gtataggcacaaaaatgacattgaaggaaaaaacaggaaaatatagaacattggtaaggtaaagggaactaataaatcgttggtgaatctcgacggtcgt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35551452 |
gtataggcacaaaaatgagattgaaggaaaaaacaggaaaatatagaacattggtaaggtaaagggaactaataaatcgttggtgaatctcgacggtcgt |
35551353 |
T |
|
| Q |
101 |
tccacatgttcgctgcaacaaacagctgcaatcctcgcgttgtgatatttctggcacctagattcctttaggaataggttgggaattgacccttgttaat |
200 |
Q |
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| T |
35551352 |
tccacatgtttgctgcaa-------------tcctcacgttgtgatatttctggcacctagattcctttaggaataggttgggaattgacccttgttaat |
35551266 |
T |
|
| Q |
201 |
tcggaatggaaagaaagattccagaaagaaaaatatattggaaaatagaaaggaaggctgagaggctccagtaacaatctcctattagccagttggctcc |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35551265 |
tcggaatggaaagaaagattccagaaagaaaaagatattgaaaaatagaaaggaaggctgagaggctccagtaacaatctcctattagccagttggctct |
35551166 |
T |
|
| Q |
301 |
ccaagaatttatagagtgaaaggtaaaccaaggacgtgtgagatgttattgaatcgaaaatctcgatgaaaccatttggtgatttgatttggataagttt |
400 |
Q |
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| T |
35551165 |
ccaagaatttgtagagtgaaaggtaaaccaaggacgtgtgagatgttattgaatcgaaaatctcgatgaaaccatttggtgatttgatttggataagttt |
35551066 |
T |
|
| Q |
401 |
cactcttttcaaaccatgtataatgaagaactatgaacggagagtaattgaattgaaagagatattattcacaaaatatgagtattacaatgaggaacta |
500 |
Q |
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| T |
35551065 |
cactcttttcaaaccatgtataatgaagaactatgaacggagagtaactgaattgaaagagatattattcacaaaatatgagtattacaatgaggaacta |
35550966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 578 - 680
Target Start/End: Complemental strand, 35550795 - 35550693
Alignment:
| Q |
578 |
tcacttgatgttaccggcaagtcacatttcccgttcattttaattaaaggatacctaaacttttaagttcaactttaaaaacttatctttaacttctcaa |
677 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
35550795 |
tcacttgatgttaccggcaagtcacatttcccgttcattttaattaaaggatacctaaacttttaagtccaactttaaaaacctatctttaacttctcaa |
35550696 |
T |
|
| Q |
678 |
tct |
680 |
Q |
| |
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||| |
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| T |
35550695 |
tct |
35550693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 613 - 680
Target Start/End: Complemental strand, 35526951 - 35526885
Alignment:
| Q |
613 |
cattttaattaaaggatacctaaacttttaagttcaactttaaaaacttatctttaacttctcaatct |
680 |
Q |
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| T |
35526951 |
cattttaattaaaggatacccaaacttt-aagatcaaatttaaaaacttgtctttaaattctcaatct |
35526885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 185 - 299
Target Start/End: Complemental strand, 19294194 - 19294080
Alignment:
| Q |
185 |
attgacccttgttaattcggaatggaaagaaagattccagaaagaaaaatatattggaaaatagaaaggaaggctgagaggctccagtaacaatctccta |
284 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19294194 |
attggcccttgttaattcggaatggaaagaaagattccagaaagaaaaagatcttggaaaatagaaaggaaggctgagaggctccagtaaagatctccta |
19294095 |
T |
|
| Q |
285 |
ttagccagttggctc |
299 |
Q |
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| T |
19294094 |
ttagccatttggctc |
19294080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 19294326 - 19294223
Alignment:
| Q |
62 |
aagggaactaataaatcgttggtgaatctcgacggtcgttccacatgttcgctgcaacaaacagctgcaatcctcgcgttgtgatatttctggcacctag |
161 |
Q |
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|||||||||||||| | || || |||||||||||| ||||| || || ||||| ||||||||||||||||||| | ||||||||| |||||||| | |
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| T |
19294326 |
aagggaactaataacttgtgggcgaatctcgacggatgttccgcacgt---ctgcagcaaacagctgcaatcctcgtgccgtgatatttgtggcacctcg |
19294230 |
T |
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| Q |
162 |
attcctt |
168 |
Q |
| |
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|| |||| |
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| T |
19294229 |
atccctt |
19294223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 13040626 - 13040685
Alignment:
| Q |
197 |
taattcggaatggaaagaaagattccagaaagaaaaatatattggaaaatagaaaggaag |
256 |
Q |
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|||||||||| ||||| |||||||||| ||||||| | || ||||||||||||||||||| |
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| T |
13040626 |
taattcggaagggaaaaaaagattccataaagaaacagatcttggaaaatagaaaggaag |
13040685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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