View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17134_low_50 (Length: 380)
Name: NF17134_low_50
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_50 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 58 - 370
Target Start/End: Complemental strand, 24765699 - 24765390
Alignment:
| Q |
58 |
cagcatcctccttatatttgcgtgtctttgaagtttcagcatacaatatacattgttttggataaaactaatctatccccatctctccnnnnnnnnnngt |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24765699 |
cagcatcctccttatatttgcgtgtctttgaagtttcagcatacaatatacattgttttggataaaactaatctatccccatctctccttttttttt-gt |
24765601 |
T |
|
| Q |
158 |
ctcttttatttaaggttattttaggttacctttaaagaattgggggttgtttactcaacaaactatgaaaattagccacattaataaatcaacaagtata |
257 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24765600 |
ctcttttgtttaaggttattttaggttacctttaaagaattgggggttgtttactcaacaaactatgaaaattagccacattaataaatcaacaagtaga |
24765501 |
T |
|
| Q |
258 |
gtaaaaattagtttgtgggtatatatatcttgcaacttgactcatgtgactaattattttgtggataaattatccacctagtctcacctttctttaaaca |
357 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24765500 |
gtaaaaattagtttgtgggtat--atatcttgcaactggactcatgtgactaattattttgtggataaattatccacctagtctcacctttctttaaaca |
24765403 |
T |
|
| Q |
358 |
tgtactgcctttg |
370 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
24765402 |
tatactgcctttg |
24765390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 246
Target Start/End: Original strand, 51501804 - 51501991
Alignment:
| Q |
58 |
cagcatcctccttatatttgc--gtgtctttgaagtttcagcatacaatatacattgttttggataaaactaatctatccccatctctccnnnnnnnnnn |
155 |
Q |
| |
|
|||| |||||||||||||||| || |||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
51501804 |
cagcttcctccttatatttgctagtatctttgaagtttcagcatgcaatatacattgttttggatgaaactaatttatcctcatctctcc----tttttt |
51501899 |
T |
|
| Q |
156 |
gtctcttttatttaaggt-tattttaggttacctttaaagaattgggggttgtttactcaacaaactatgaaaattagccacattaataaat |
246 |
Q |
| |
|
|||||||||||||||||| | ||| | || | |||| |||||||| | || |||||| ||||||| | ||||||||||||||||||||||| |
|
|
| T |
51501900 |
gtctcttttatttaaggtatttttaatgtaatctttgaagaattgtgtgtaatttactgaacaaacaacgaaaattagccacattaataaat |
51501991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 24750572 - 24750471
Alignment:
| Q |
176 |
ttttaggttacctttaaagaattgggggttgtttactcaacaaactatgaaaattagccacattaataaatcaacaagtatagtaaaaattagtttgtgg |
275 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |||||||| ||||| ||||||||||||||||| ||||||| ||||||| |||||||||||||||| | |
|
|
| T |
24750572 |
ttttaggttacctt-aaagaattgtgggtaatttactcatcaaacaatgaaaattagccacatcaataaatgtacaagtagggtaaaaattagtttgtag |
24750474 |
T |
|
| Q |
276 |
gta |
278 |
Q |
| |
|
||| |
|
|
| T |
24750473 |
gta |
24750471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University