View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_52 (Length: 365)
Name: NF17134_low_52
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 27536655 - 27536317
Alignment:
| Q |
18 |
cttttgtagaagatgcttaatgcgtgtccatgagcttttgtaagccttttcttggaactcttgacattgttgtatttatattctaatttatcaaacttga |
117 |
Q |
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| T |
27536655 |
cttttgtagcagatgcttaatgtgtgtccatgagcttttgtaagcctttttttggaactcttgacattgttgtatttatattctaatttatcaaacttga |
27536556 |
T |
|
| Q |
118 |
tagacttttaaatttcatttgaaatccttttcattaaccattactttaataactaatgtttctaaagtttatcacttctgttaagttaaacatctcttat |
217 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27536555 |
tagacttttaaatttcacttgaaagccttttcattaaccattactttagcaactaatgtttctaaagtttatcacttctgttaagttaaacatctcttat |
27536456 |
T |
|
| Q |
218 |
gttgaattttatttttccagatttaacattccaagaggtcgacatgggtctgattttgttgcttttcttctactggtgctgagaagaaatatgattcttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27536455 |
gttgaattttatttttccagatttaacattccaagaagtcgacatgggtctgattttgttgcatttcttctactggtgctgagaagaaatatgattcttg |
27536356 |
T |
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| Q |
318 |
ccattcttttgcaagtttattttttgaagcagcctatgct |
357 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||| |
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| T |
27536355 |
ccattc-tttacaagtttattttttgaagcagcctatgct |
27536317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 15643186 - 15642848
Alignment:
| Q |
18 |
cttttgtagaagatgcttaatgcgtgtccatgagcttttgtaagccttttcttggaactcttgacattgttgtatttatattctaatttatcaaacttga |
117 |
Q |
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| T |
15643186 |
cttttgtagcagatgcttaatgtgtgcccatgagcttttgtaagcctttttttggaactcttgacgttgctgtatttatattctaatttatcaaactcga |
15643087 |
T |
|
| Q |
118 |
tagacttttaaatttcatttgaaatccttttcattaaccattactttaataactaatgtttctaaagtttatcacttctgttaagttaaacatctcttat |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15643086 |
tagacttttaaatttcatttgaaagccttttcattaaccattactttagcaactaatgattctaaagtttatcacttctgttaagttaaacatctcttat |
15642987 |
T |
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| Q |
218 |
gttgaattttatttttccagatttaacattccaagaggtcgacatgggtctgattttgttgcttttcttctactggtgctgagaagaaatatgattcttg |
317 |
Q |
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| T |
15642986 |
gttgaattttatttttccagatttaacattccaagaaatcgacatgggtctgattttgttgcttttcttctactggtgctgagaagaaatatgattcttg |
15642887 |
T |
|
| Q |
318 |
ccattcttttgcaagtttattttttgaagcagcctatgct |
357 |
Q |
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| T |
15642886 |
ccattc-tttacaagtttattttttgaagcagcctatgct |
15642848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 92 - 357
Target Start/End: Complemental strand, 15654438 - 15654174
Alignment:
| Q |
92 |
tttatattctaatttatcaaacttgatagacttttaaatttcatttgaaatccttttcattaaccattactttaataactaatgtttctaaagtttatca |
191 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
15654438 |
tttattttctaatttatcaaacttgatagacttttaaatttcatttgaaagccttttcattaaccattactttagcaattaatgtttctaaagtttatca |
15654339 |
T |
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| Q |
192 |
cttctgttaagttaaacatctcttatgttgaattttatttttccagatttaacattccaagaggtcgacatgggtctgattttgttgcttttcttctact |
291 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
15654338 |
cttctgttaagttaaaaatctcttatgttgaattttattttttcagatttaacattccaagaagtcgacatgggtttgattttgttgcttttcttctact |
15654239 |
T |
|
| Q |
292 |
ggtgctgagaagaaatatgattcttgccattcttttgcaagtttattttttgaagcagcctatgct |
357 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
15654238 |
ggtgctgagaagaaatatgattcttgccattc-tttacaagtttattttttgaagcagcctatgct |
15654174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 271 - 357
Target Start/End: Complemental strand, 15619716 - 15619631
Alignment:
| Q |
271 |
ttttgttgcttttcttctactggtgctgagaagaaatatgattcttgccattcttttgcaagtttattttttgaagcagcctatgct |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |
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| T |
15619716 |
ttttgttgcttttcttctactggtgctgagaagaaatatgattcttgccattc-tttacaagcttattttttgaagcagcctatgct |
15619631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 15654488 - 15654439
Alignment:
| Q |
18 |
cttttgtagaagatgcttaatgcgtgtccatgagcttttgtaagcctttt |
67 |
Q |
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||||||||| | |||||||||| ||||||||||||||||||||||||||| |
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| T |
15654488 |
cttttgtagcatatgcttaatgtgtgtccatgagcttttgtaagcctttt |
15654439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 231 - 357
Target Start/End: Complemental strand, 22003638 - 22003513
Alignment:
| Q |
231 |
tttccagatttaacattccaagaggtcgacatgggtctgattttgttgcttttcttctactggtgctgagaagaaatatgattcttgccattcttttgca |
330 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
22003638 |
tttccagatttaacattccaagaagtcgacatgggtctgattttgttgcttttcttctactggtgctgagaagaaatatgattcttgccattc-tttaca |
22003540 |
T |
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| Q |
331 |
agtttattttttgaagcagcctatgct |
357 |
Q |
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| T |
22003539 |
agtttattttttgaagcagcctatgct |
22003513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 47935468 - 47935534
Alignment:
| Q |
18 |
cttttgtagaagatgcttaatgcgtgtccatgagcttttgtaagccttttcttggaactcttgacat |
84 |
Q |
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||||||| | ||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
47935468 |
cttttgtggcagatggttaatgtgtgtccatgagcttttgtaagacttttgttggaactcttgacat |
47935534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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