View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_53 (Length: 364)
Name: NF17134_low_53
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 50 - 303
Target Start/End: Original strand, 19551652 - 19551906
Alignment:
| Q |
50 |
ttggttgacattgatttatctaagagagcttatgacgaaattcttgtggaacaggacggtttttcctttatggttgcatctcaatacgagcgaaggcctc |
149 |
Q |
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| T |
19551652 |
ttggttgacattgatttatctaagagagcttatgacgaaattcttgtggaacaggacggtttttcctttatggttgcatctcaatacgagcgaaggcctc |
19551751 |
T |
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| Q |
150 |
tactctgccatcactgttatatcattagacacaatgtcacgacttgtaaatggctgca-cccggagacatcaaaggagaatgatcttgggaaaataacct |
248 |
Q |
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| T |
19551752 |
tactcttccatcactgttatatcattagacacaatgtcacgacttgtaaatggctgcaccccggtgacatcaaaggagaatgatcgtgggaaaaagacct |
19551851 |
T |
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| Q |
249 |
atggagggtgaactagtgaaacgaaaattccttcagcaacaccgtaattataata |
303 |
Q |
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| T |
19551852 |
atggatgttgaactagtgaaacgaaaacccccttagcagcaccgtaataataata |
19551906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 19551546 - 19551587
Alignment:
| Q |
9 |
atattaacgggaacggacactaaaggaagtagaaagtgcagt |
50 |
Q |
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| T |
19551546 |
atattaatggaaacggacactgaaggaagtagaaagtgcagt |
19551587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 33042116 - 33042076
Alignment:
| Q |
56 |
gacattgatttatctaagagagcttatgacgaaattcttgt |
96 |
Q |
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| T |
33042116 |
gacattgatctttctaagagagcttatgatgaaattcttgt |
33042076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 34510688 - 34510728
Alignment:
| Q |
56 |
gacattgatttatctaagagagcttatgacgaaattcttgt |
96 |
Q |
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| T |
34510688 |
gacattgatttttctaagagagcttatgatgaaatacttgt |
34510728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 186
Target Start/End: Complemental strand, 32239283 - 32239147
Alignment:
| Q |
50 |
ttggttgacattgatttatctaagagagcttatgacgaaattcttgtggaacaggacggtttttcctttatggttgcatctcaatacgagcgaaggcctc |
149 |
Q |
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| T |
32239283 |
ttggtggacattgacttatctaaaagagcctatgatgaaattcttgtggaacaggaaggttttacctttaaggttgaagtacaatatgagaggagaccac |
32239184 |
T |
|
| Q |
150 |
tactctgccatcactgttatatcattagacacaatgt |
186 |
Q |
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| | | ||||||||||||| |||||||||| ||||| |
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| T |
32239183 |
tcttttaccatcactgttatgtcattagacaaaatgt |
32239147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 16313457 - 16313497
Alignment:
| Q |
56 |
gacattgatttatctaagagagcttatgacgaaattcttgt |
96 |
Q |
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| T |
16313457 |
gacattgatctttctaagagagcttatgatgaaattcttgt |
16313497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 18494451 - 18494491
Alignment:
| Q |
56 |
gacattgatttatctaagagagcttatgacgaaattcttgt |
96 |
Q |
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||||||||| | ||||||||||||||||| ||||||||||| |
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| T |
18494451 |
gacattgatctttctaagagagcttatgatgaaattcttgt |
18494491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 33957851 - 33957689
Alignment:
| Q |
50 |
ttggttgacattgatttatctaagagagcttatgacgaaattcttgtggaacaggacggtttttcctttatggttgcatctcaatacgagcgaaggcctc |
149 |
Q |
| |
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||||| |||||||| |||||||| ||||| ||||| |||||||||||||||| ||| |||||| |||||| ||||| | ||||| || | || || | |
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| T |
33957851 |
ttggtggacattgacttatctaaaagagcctatgatgaaattcttgtggaacgggaaggttttgcctttaaggttgaagtacaatatgaaaggagaccgc |
33957752 |
T |
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| Q |
150 |
tactctgccatcactgttatatcattagacacaatgtcacgacttgtaaatggctgcacccgg |
212 |
Q |
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| | ||||||||||||||| ||||| |||| ||||| ||||||| || ||| ||||||||| |
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| T |
33957751 |
tcttttgccatcactgttatgtcattggacataatgtttcgacttgcaagtggttgcacccgg |
33957689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 24371963 - 24372032
Alignment:
| Q |
50 |
ttggttgacattgatttatctaagagagcttatgacgaaattcttgtggaacaggacggtttttccttta |
119 |
Q |
| |
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||||| |||||||| || |||||||| || |||| |||||||||||||||| |||| ||||| |||||| |
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| T |
24371963 |
ttggtggacattgacttgtctaagagggccgatgatgaaattcttgtggaacgggaccgttttgccttta |
24372032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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