View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_55 (Length: 357)
Name: NF17134_low_55
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 25 - 331
Target Start/End: Complemental strand, 42466999 - 42466693
Alignment:
| Q |
25 |
ataaccaatatccatttccttggaaagagaatcgaaatccttcacttctcacgcaaggtactctaagaaattcaattttttattaacaaatcacattgta |
124 |
Q |
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| T |
42466999 |
ataaccaatatccatttccttggaaagagaatcgaaatccttcacttctcacgcaaggtactctaagaaattcaaatttttatcaacaaatcacattgta |
42466900 |
T |
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| Q |
125 |
agtacgatatcactaaagccaatgacaaatgatgcaacacattaattatgcaagaaaaaaggttgaatttggatcacaaaattatgcagttgttgaccta |
224 |
Q |
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| T |
42466899 |
agtatgatatcactcaagccaatgacaaatgatgcaacacattaattatgcaagaaaaaaggttgaatttggatcacaaaatcatgcagttgttgaccta |
42466800 |
T |
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| Q |
225 |
tattgtatcaagattggatgattcatatttcaacttcacattttagacgcaatttactaaagctgaagcatgaactacctctctttgatttgaccgttta |
324 |
Q |
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| T |
42466799 |
tattgtatcaagattggatgattcatatttcaacttcacattttagacgcaatttactaaagcttaagcatgaactacctctttttgatttgaccgttta |
42466700 |
T |
|
| Q |
325 |
tatcaca |
331 |
Q |
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||||||| |
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| T |
42466699 |
tatcaca |
42466693 |
T |
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