View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_56 (Length: 343)
Name: NF17134_low_56
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 45893553 - 45893236
Alignment:
| Q |
18 |
cttattggaggtatatcaaaatcattatttatattgtaaagaatgatatagcctatattgcagttgtagagatnnnnnnnnnnnca--ctgatgtcatag |
115 |
Q |
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| T |
45893553 |
cttattggaggtatatcaaaatcattatttatattgtaaagaatgatatagcctatattgcagttgtagagataaaaaaaaaaaaaaactgatgtcatag |
45893454 |
T |
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| Q |
116 |
cgacttagatgaaattataatcatttgatttttaaaattttgttaatgatcaaatacatgttctaaattataattggtgacttgtaatataaattttaga |
215 |
Q |
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| T |
45893453 |
cgacttagatgaaattataatcatttgatttttaaaattttgttaatgatcaaatacatgttctaaattataattggtgacttgtaatataaattttaga |
45893354 |
T |
|
| Q |
216 |
cccaagcttcaagtggaatgtgtttttgaaggaatttgcgcacccagccatgagtcctccctctgctgttggatcaatcggtccagtattttttcttgca |
315 |
Q |
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| T |
45893353 |
cccaagcttcaagtggaatgtgtttttgaaggaatttgcgcacccagccatgagtcctccctctgctgttggatcaatcggtccagtattttttcttgca |
45893254 |
T |
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| Q |
316 |
attgctatgtttaatttt |
333 |
Q |
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|||||||||||||||||| |
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| T |
45893253 |
attgctatgtttaatttt |
45893236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 158 - 332
Target Start/End: Original strand, 12980350 - 12980522
Alignment:
| Q |
158 |
ttaatgatcaaatacatgttctaaattataattggtgacttg-taatataaattttagacccaagcttcaagtggaatgtgtttttgaaggaatttgcgc |
256 |
Q |
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|||||||| |||| ||||||||||||| |||||| || |||| | || | ||| ||||||| |||||||||||||||||||||| |||||||| ||| |
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| T |
12980350 |
ttaatgatgaaatccatgttctaaattctaattgatggcttgatgattt---tttcagacccaggcttcaagtggaatgtgtttttcaaggaattcccgc |
12980446 |
T |
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| Q |
257 |
acccagccatgagtcctccctctgctgttggatcaatcggtccagtattttttcttgcaattgctatgtttaattt |
332 |
Q |
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| T |
12980447 |
acccaggaattgctcctttctctacagttggatcaatgggtccaacattttttcttgcaactgctatgtttaattt |
12980522 |
T |
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