View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_58 (Length: 342)
Name: NF17134_low_58
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 93 - 252
Target Start/End: Original strand, 44232838 - 44232995
Alignment:
| Q |
93 |
ctaataggcaaaggaattttattaacaaccgacccaatcacaaggtgtgacaaagctgcaagattacaacaacaaatcatacaatacatctacatcaaca |
192 |
Q |
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| T |
44232838 |
ctaataggcaaaggaattttattaacaaccgacccaatcataa--tgtgacaaagctgcaagattacaacaacaaatcatacaatacatctgcatcaaca |
44232935 |
T |
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| Q |
193 |
ccctatcataaaaaatatgattgaattaatatttcattgaaaacttcccaacgactaagg |
252 |
Q |
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| T |
44232936 |
ccctatcatagaaaatatgattgaattgatatttcattgaaaacttcccaacgactaagg |
44232995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 44234831 - 44234910
Alignment:
| Q |
247 |
ctaaggaaaggtatattgtagtaaacctcctgatccaagcaattcaaccaacacggccaaccgaaattacgaacattgcc |
326 |
Q |
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| T |
44234831 |
ctaaggaaaggtatattgtagcaaacctcctgatccaagcaattcaaccaacactgccaaccgaaattacgaacattgcc |
44234910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 44232759 - 44232796
Alignment:
| Q |
13 |
atactccctcaattggaatttccaaacttgtacaccat |
50 |
Q |
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| T |
44232759 |
atactccctcaattggaatttccaaacttgtacaccat |
44232796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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