View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17134_low_62 (Length: 333)
Name: NF17134_low_62
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_62 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 44722769 - 44723018
Alignment:
| Q |
16 |
atagaaaaaagaaaagtgttactttacgaaaacaataagataggcattattaattaacagaaatcaattttgttttccatttcttcttctttttatatgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44722769 |
atagaaaaaagaaaagtgttactttacgaaaacaataagataggcattattaattaacacaaatcaattttgttttccatttcttcttctttttatatgt |
44722868 |
T |
|
| Q |
116 |
aaaataaaaaatggaaacagaggaggactttactagtatctcccttggaggaagggtaaagaccaattatttttgtgcttactagtatcagttgaccaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44722869 |
aaaataaaaaatggaaacagaggaggactttactagtatctcccttggaggaagggtaaagaccaattatttttgtgcttactagtatcagttgaccaaa |
44722968 |
T |
|
| Q |
216 |
accttattatttgatatcatgttttactacatagaatagaatagagcaggc |
266 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44722969 |
accttatta-ttgatatcatgttttactacatagaatagaatagagcaggc |
44723018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University