View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17134_low_63 (Length: 331)

Name: NF17134_low_63
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17134_low_63
NF17134_low_63
[»] chr8 (4 HSPs)
chr8 (1-207)||(15265845-15266051)
chr8 (288-323)||(15266132-15266167)
chr8 (53-192)||(32906845-32906986)
chr8 (136-192)||(4267372-4267428)
[»] chr4 (3 HSPs)
chr4 (134-186)||(42430014-42430065)
chr4 (134-192)||(42414572-42414630)
chr4 (134-186)||(34276973-34277024)
[»] chr3 (2 HSPs)
chr3 (134-192)||(1030486-1030544)
chr3 (102-151)||(27167868-27167917)
[»] chr2 (1 HSPs)
chr2 (77-186)||(21352340-21352449)
[»] chr6 (1 HSPs)
chr6 (53-192)||(21946652-21946793)
[»] chr1 (2 HSPs)
chr1 (135-192)||(24614769-24614826)
chr1 (56-150)||(5559338-5559434)
[»] chr5 (1 HSPs)
chr5 (77-176)||(27110622-27110722)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 15265845 - 15266051
Alignment:
Q  1 aaacaattataaggagtttcctaaggtattgacctaaccgtccaaaatacagaccgatccaaaataaaatgtaagtcgatccaaaaatatctaaaaccac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  15265845 aaacaattataaggagtttcctaaggtattgacctaaccgtccaaaatacagaccgatccaaaataaaacgtaagtcgatacaaaaatatctaaaaccac 15265944  T
Q  101 gaaaaatgaatattttttaatgtgtttgaatcgtgttttgtaaaaaccgctcatattggatcgaattttggatcacatttttcaaaccgaacaaactgca 200  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||    
T  15265945 aaaaaatgaatattttttaatgtgtttgaatagtgttttgtaaaaaccgctcatatcggatcaaattttggatcacattttccaaaccgaacaaaccgca 15266044  T
Q  201 aaagtaa 207  Q
    |||||||    
T  15266045 aaagtaa 15266051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 323
Target Start/End: Original strand, 15266132 - 15266167
Alignment:
Q  288 gcattcatttcatctatactattaccacttcatatc 323  Q
    ||||| ||||||||||||||||||||||||||||||    
T  15266132 gcattaatttcatctatactattaccacttcatatc 15266167  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 192
Target Start/End: Original strand, 32906845 - 32906986
Alignment:
Q  53 accgatccaaaataaaat-gtaagtcgatccaaaaatatctaaaaccacgaaaaat-gaatattttttaatgtgtttgaatcgtgttttgtaaaaaccgc 150  Q
    |||||||||||||||||  | || |||||||||||| | | |||||| | |||||  ||||||||||  ||||||||| ||  |||||||  ||||||||    
T  32906845 accgatccaaaataaaaccgcaaatcgatccaaaaaaaccgaaaaccgcaaaaaaccgaatatttttggatgtgtttggatgttgttttggcaaaaccgc 32906944  T
Q  151 tcatattggatcgaattttggatcacatttttcaaaccgaac 192  Q
    |   ||||| ||| |||| ||||||||||||  |||||||||    
T  32906945 tatgattggttcggatttcggatcacattttcaaaaccgaac 32906986  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 4267372 - 4267428
Alignment:
Q  136 ttttgtaaaaaccgctcatattggatcgaattttggatcacatttttcaaaccgaac 192  Q
    |||||||||||||||| | || |||||| |||||||||||| ||||  |||||||||    
T  4267372 ttttgtaaaaaccgctaagatcggatcggattttggatcaccttttcaaaaccgaac 4267428  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 42430014 - 42430065
Alignment:
Q  134 tgttttgtaaaaaccgctcatattggatcgaattttggatcacatttttcaaa 186  Q
    |||||||||||||||||||| || ||||||||||| ||||||| |||||||||    
T  42430014 tgttttgtaaaaaccgctcagatcggatcgaatttcggatcac-tttttcaaa 42430065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 42414630 - 42414572
Alignment:
Q  134 tgttttgtaaaaaccgctcatattggatcgaattttggatcacatttttcaaaccgaac 192  Q
    |||||||||||||||||| | || |||||| |||||||||||| ||||  |||||||||    
T  42414630 tgttttgtaaaaaccgctaagatcggatcggattttggatcactttttcaaaaccgaac 42414572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 34276973 - 34277024
Alignment:
Q  134 tgttttgtaaaaaccgctcatattggatcgaattttggatcacatttttcaaa 186  Q
    |||||||||||||||||| | || |||||||||| |||||||| |||||||||    
T  34276973 tgttttgtaaaaaccgctaagatcggatcgaattctggatcac-tttttcaaa 34277024  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 1030486 - 1030544
Alignment:
Q  134 tgttttgtaaaaaccgctcatattggatcgaattttggatcacatttttcaaaccgaac 192  Q
    |||||||||||||||||| | || |||||| |||||||||||| ||||  |||||||||    
T  1030486 tgttttgtaaaaaccgctaagatcggatcggattttggatcactttttcgaaaccgaac 1030544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 27167917 - 27167868
Alignment:
Q  102 aaaaatgaatattttttaatgtgtttgaatcgtgttttgtaaaaaccgct 151  Q
    ||||||||||||||||  ||| ||||||||  ||||||||||||||||||    
T  27167917 aaaaatgaatatttttggatgcgtttgaatgctgttttgtaaaaaccgct 27167868  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 21352449 - 21352340
Alignment:
Q  77 cgatccaaaaatatctaaaaccacgaaaaat-gaatattttttaatgtgtttgaatcgtgttttgtaaaaaccgctcatattggatcgaattttggatca 175  Q
    ||||| ||||| ||| |||||| | |||||| |||||| |||  ||| ||||| ||  |||||||||||||||||| | || |||||| |||||||||||    
T  21352449 cgatcaaaaaaaatcgaaaaccgcaaaaaatcgaatatatttggatgcgtttggatgttgttttgtaaaaaccgctaagatcggatcggattttggatca 21352350  T
Q  176 catttttcaaa 186  Q
    | |||||||||    
T  21352349 c-tttttcaaa 21352340  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 192
Target Start/End: Original strand, 21946652 - 21946793
Alignment:
Q  53 accgatccaaaataaaat-gtaagtcgatccaaaaatatctaaaaccacgaaaaat-gaatattttttaatgtgtttgaatcgtgttttgtaaaaaccgc 150  Q
    |||||||||||||||||  | ||  ||||||||||| ||| |||||| | |||||  ||||||||||| ||||||||| ||  ||||||| |||||||||    
T  21946652 accgatccaaaataaaaccgcaaaccgatccaaaaaaatcgaaaaccgcaaaaaaccgaatattttttgatgtgtttggatgttgttttggaaaaaccgc 21946751  T
Q  151 tcatattggatcgaattttggatcacatttttcaaaccgaac 192  Q
    |   ||||| ||| |||| ||||||  ||||  |||||||||    
T  21946752 tataattggttcggatttcggatcagcttttcaaaaccgaac 21946793  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 24614769 - 24614826
Alignment:
Q  135 gttttgtaaaaaccgctcatattggatcgaattttggatcacatttttcaaaccgaac 192  Q
    ||||||||||||||||| | || |||||  |||||||||||| ||||| |||||||||    
T  24614769 gttttgtaaaaaccgctaagatcggatcagattttggatcacttttttaaaaccgaac 24614826  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 5559338 - 5559434
Alignment:
Q  56 gatccaaaataaaat-gtaagtcgatccaaaaatatctaaaaccacgaaaaa-tgaatattttttaatgtgtttgaatcgtgttttgtaaaaaccgc 150  Q
    ||||||||||||||| | || ||||| |||||| ||| |||||| | ||||| |||||||||||  ||||||||| ||  ||||||| |||||||||    
T  5559338 gatccaaaataaaatcgcaaatcgattcaaaaaaatcgaaaaccgcaaaaaactgaatatttttggatgtgtttggatgttgttttggaaaaaccgc 5559434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 27110622 - 27110722
Alignment:
Q  77 cgatccaaaaatatctaaaaccacgaaaaat-gaatattttttaatgtgtttgaatcgtgttttgtaaaaaccgctcatattggatcgaattttggatca 175  Q
    ||||||||||| ||| |||||| | |||||  |||||| |||  ||||||||| ||  |||||||||||||||||| | || |||||| ||| |||||||    
T  27110622 cgatccaaaaaaatcgaaaaccgcaaaaaaccgaatatatttggatgtgtttggatgttgttttgtaaaaaccgctaagatcggatcggattctggatca 27110721  T
Q  176 c 176  Q
    |    
T  27110722 c 27110722  T

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