View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_65 (Length: 328)
Name: NF17134_low_65
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_65 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 13611064 - 13611390
Alignment:
| Q |
1 |
aagaataaaattgaataaattaattagcactaattggtgattgcacctgttaatgaaaatgattagtaacgtctttcgccgacaaaattgtttgaaacgg |
100 |
Q |
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| T |
13611064 |
aagaataaaattgaataaattaattagcactaattggtgattgcacctgttaatgaaaatgattagtaacgtctttcgccgacaaaattgtttgaaacgg |
13611163 |
T |
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| Q |
101 |
cttcatggattgtggctgcatagtgttctgttcggtgtttttacttgtcagagaattattacattattactagcctcatttatgtgtgnnnnnnnncttc |
200 |
Q |
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| T |
13611164 |
cttcatggattgtggctgcatagtgttctgttcggtgtttttacttgtcagagaattattacattattactagcctcatttatgtgtgtttttttt-ttc |
13611262 |
T |
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| Q |
201 |
ttcttcttcatgtgcgtgtgtttgtgacagtgtttgaaaacacatcatcaacnnnnnnncgttcttgttctttttacatttgtaacaatctgatttgtgg |
300 |
Q |
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| T |
13611263 |
ttcttcttcatgtgcgtgtgtttgtgacagtgtttgaaaacacatcatcaacaaaaaaacgttcttgttctttttacatttgtaacattctgatttgtgg |
13611362 |
T |
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| Q |
301 |
tgagaacataggacttttgagtggagaa |
328 |
Q |
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| T |
13611363 |
tgagaacataggacttttgagtggagaa |
13611390 |
T |
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