View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_67 (Length: 324)
Name: NF17134_low_67
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 33822790 - 33822480
Alignment:
| Q |
18 |
aaactttttgtataaagaaagagtgatgcataacgtgatatactttttgaaaaacacatgcaaacaaggcttttacagcagtggtggaatctaaaacatc |
117 |
Q |
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| T |
33822790 |
aaactttttgtataaagaaagagtgatgcataacgtgatatactttttgaaaaacacatgcaaacaaggcttttacagcagtggtggaatctataacatc |
33822691 |
T |
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| Q |
118 |
aaacatgcataccatgacaaaaactgaaaccaatgcatgcgagctaaagactttgtgtaaatattatagccagcatgtgtgcagtgctgcaagaaaaaca |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33822690 |
aaacatgcataccatgacaaaaattgaaaccaatgcatgcgagctaaagactttgtgtaaatattatagctagcatgtgtgcagtgctgcaagaaaaaca |
33822591 |
T |
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| Q |
218 |
ccatta--------------atttagaattattaacaaaatttgtagttcaggtt-----------caacttcaaatttcttttgttgcttcagtttacc |
292 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33822590 |
ccattaatttgacagctttaatttagaattattaacaaaatttgtagttcaggttcaactcatctgcaacttcaaatttcttttgttgcttcagtttacc |
33822491 |
T |
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| Q |
293 |
tgtcattgcag |
303 |
Q |
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||||||||||| |
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| T |
33822490 |
tgtcattgcag |
33822480 |
T |
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