View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_68 (Length: 319)
Name: NF17134_low_68
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_68 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 20226161 - 20225846
Alignment:
| Q |
11 |
aaatcaactattttattggtcatgtataattatannnnnnnn----atcgaactggtcgtatatattattttaagttggacgctatttacctcgttaatt |
106 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20226161 |
aaatcaactattttattggtcatgtataattatatttttattttttatcgaactggtcgtatatattcttttaagttggacgctatttacctcgttaatt |
20226062 |
T |
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| Q |
107 |
tccttcctattagtagtgtgaaggtgggaaaattgcacttaaaactttattcgctgcctttttgaaatgaattggtaattggtagtgatcctaccacgta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20226061 |
tccttcctattagtagtgtgaaggtgggaaaattgcacttaaaactttattcgctgcctttttgaaatgaattggtaattggtagtgatcctaccatgta |
20225962 |
T |
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| Q |
207 |
ctgtccctaannnnnnnnnnnnnnnttgttcagacagtgatttcttttgcttaattctgaataaacaaaaaccataatcca------taaattaagtatg |
300 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
20225961 |
ctgtccctaa--atattatatatatttgttaagacagtgatttcttttgcttaattctgaataaacaaaaaccataatatatatatttaaattaagtatg |
20225864 |
T |
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| Q |
301 |
gtatcatcccccatacctc |
319 |
Q |
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||| ||||||||||||||| |
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| T |
20225863 |
gta-catcccccatacctc |
20225846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 44310673 - 44310358
Alignment:
| Q |
11 |
aaatcaactattttattggtcatgtataattatannnnnnnn----atcgaactggtcgtatatattattttaagttggacgctatttacctcgttaatt |
106 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44310673 |
aaatcaactattttattggtcatgtataattatatttttattttttatcgaactggtcgtatatattcttttaagttggacgctatttacctcgttaatt |
44310574 |
T |
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| Q |
107 |
tccttcctattagtagtgtgaaggtgggaaaattgcacttaaaactttattcgctgcctttttgaaatgaattggtaattggtagtgatcctaccacgta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44310573 |
tccttcctattagtagtgtgaaggtgggaaaattgcacttaaaactttattcgctgcctttttgaaatgaattggtaattggtagtgatcctaccatgta |
44310474 |
T |
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| Q |
207 |
ctgtccctaannnnnnnnnnnnnnnttgttcagacagtgatttcttttgcttaattctgaataaacaaaaaccataatcca------taaattaagtatg |
300 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
44310473 |
ctgtccctaa--atattatatatatttgttaagacagtgatttcttttgcttaattctgaataaacaaaaaccataatatatatatttaaattaagtatg |
44310376 |
T |
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| Q |
301 |
gtatcatcccccatacctc |
319 |
Q |
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||| ||||||||||||||| |
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| T |
44310375 |
gta-catcccccatacctc |
44310358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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