View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_71 (Length: 314)
Name: NF17134_low_71
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 381316 - 381470
Alignment:
| Q |
142 |
tgaattttattttacacaaacaagattgaattaccatatgcatgtaaatttaaacccaatccaataatgaaattacctgcagcaaccacggattcaagat |
241 |
Q |
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| T |
381316 |
tgaattttattttacacaaacaagattgaattaccatatgcatgtaaatttaaacccaatccaataatgaaattacctgcagcaaccacggattcaagat |
381415 |
T |
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| Q |
242 |
ctttcattttgacacgttttctaaggggttcatgcttatctcccaagtgggtatt |
296 |
Q |
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| T |
381416 |
ctttcattttgacacgttttctaaggggttcatgcttatctcccaagtggctatt |
381470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 381187 - 381238
Alignment:
| Q |
13 |
aatatgaaatacacaagatttataatactattgaaactgaaattttaaacac |
64 |
Q |
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| T |
381187 |
aatatgaaatacacaaggtttataagactatagaaactgaaattttaaacac |
381238 |
T |
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