View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_73 (Length: 310)
Name: NF17134_low_73
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_73 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 310
Target Start/End: Complemental strand, 32898335 - 32898030
Alignment:
| Q |
3 |
atgaaaatcttttacctgaaaataaatatttattatatgttaatcttccaatnnnnnnnnnntcacattcaccatgaaataaaggaaggtgtataaaacc |
102 |
Q |
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| T |
32898335 |
atgaaaatcttttacctgaaaataaatatttattatacgttaatcttccaataaaaaaaa--tcaaattcaccatgaaataaaggtaggtgtataaaacc |
32898238 |
T |
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| Q |
103 |
ttagttctatttctatcaaaactttatttgaaatactaatatataaatgtagtctatgcaacatgtaatgggacaagagattaaataaggaaataagata |
202 |
Q |
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| T |
32898237 |
ttagttctatttctatcaaaactttatttgaaataccaatatataaatgtagtctatgcaacatgtaatgggacaagagattaaataaggaaataagata |
32898138 |
T |
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| Q |
203 |
aattctcatttcatcaagaacacttgtgagttcacacatgttaagcaccactacaataaaaaacaaaagacattgcataagcaataacaagggtacaaag |
302 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
32898137 |
aattctcatttcatcaagaacgcttgtaagttcacacatgttaagcaccactacaataaaaaacaaaagacactgcataagcaataacaaaggtacaaag |
32898038 |
T |
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| Q |
303 |
agagattt |
310 |
Q |
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|||||||| |
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| T |
32898037 |
agagattt |
32898030 |
T |
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