View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_74 (Length: 309)
Name: NF17134_low_74
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_74 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 289
Target Start/End: Original strand, 37162401 - 37162687
Alignment:
| Q |
3 |
taccactaaaccaacccaagtgggtttacaaaatgaatagttaataaatttcatttttaaatttatcatgacttgccttaacctaaataaaactgatgat |
102 |
Q |
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| T |
37162401 |
taccactaggccaaccgaagtggatttgcaaaatgaatagttaataaatttcattttaaaatttatcatgacttgccttaacctaaataaaactgatgat |
37162500 |
T |
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| Q |
103 |
aattttaaacttttagtacaagttgattaaatttctaggatttgaagaatatacaccgtcagaagaaaacagttttacactaatatccaatcaaaatcca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162501 |
aattttaaacttttagtacaagttgattaaatttctaggatttgaagaatatacaccgtcagaagaaaacagttttacactaatatccaatcaaaatcca |
37162600 |
T |
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| Q |
203 |
ctattttgcaacattactccactcttgtatgcccagtcagaagttaataatgccatataaaaatacagcattgctttacatcgcgag |
289 |
Q |
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| T |
37162601 |
ctattttgcaacattactccactcttgtatgggcagtcagaagttaataatgccatataaaaatacagcattgctatacatcgcgag |
37162687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 596416 - 596529
Alignment:
| Q |
141 |
gatttgaagaatatacaccgtcagaagaaaacagttttacactaatatccaatcaaaatccactattttgcaacattactccactcttgtatgcccagtc |
240 |
Q |
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| T |
596416 |
gatttaaagaatatccaccgtcaattaaaaccagttttacactaacattcaatcaaaatcaactattttgccacataaccccactcttgtatgggtagtt |
596515 |
T |
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| Q |
241 |
agaagttaataatg |
254 |
Q |
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| T |
596516 |
acaagttaataatg |
596529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 49250327 - 49250276
Alignment:
| Q |
174 |
gttttacactaatatccaatcaaaatccactattttgcaacattactccact |
225 |
Q |
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| T |
49250327 |
gttttacattaacatccaatgaaaatccactattttgcaacatcaccccact |
49250276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 17511349 - 17511398
Alignment:
| Q |
167 |
gaaaacagttttacactaatatccaatcaaaatccactattttgcaacat |
216 |
Q |
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| T |
17511349 |
gaaaacagttttacactgacatccaatgaaaatccactactttgccacat |
17511398 |
T |
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