View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_75 (Length: 309)
Name: NF17134_low_75
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 2114072 - 2113779
Alignment:
| Q |
1 |
aagaaaacgaaaagagtattcaactgatgaggtaaatttccttgaaaagttctatgagaaacttggtaggttgagttttggtttgatggtggttggttca |
100 |
Q |
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| T |
2114072 |
aagaaaaagaaaagagtattcaactgatgaggtaaatttccttgaaaagttctatgagaaacttggtaggttgagttttggtttgatggtggttggttca |
2113973 |
T |
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| Q |
101 |
ttgttatcagaacttggaattagtccttctgcactctttgaggctataaaccaagtttcactcaatgcagattcaagatcttgttgtattagtatggcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2113972 |
ttgttatcagaacttggaattagtccttctgcactctttgaggctataaaccaagtttcactcaatgcagattcaagatcttgttgtattagtatggcac |
2113873 |
T |
|
| Q |
201 |
aagaacaatggtgcaagaacaatcctttcctcatgaagacactccttttttgtttagaaactttggagaaaactaaagaaaaagggaattttct |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2113872 |
aagaacaatggtgcaagaacaatcctttcctcatgaagacactccttttttgtttagaaactttggagaaaactaaagaaaaagggaattttct |
2113779 |
T |
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