View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_80 (Length: 296)
Name: NF17134_low_80
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_80 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 39241196 - 39240918
Alignment:
| Q |
18 |
gcacggacaacgatggggtcggtatcaactctcccaatcaagcgtttcacattgaaaattgtatctccaaatagcaactcacgcttgcgggagagttcgc |
117 |
Q |
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| T |
39241196 |
gcacggaccacgatggggtcggtatcaactctcccaatcaagtgtttcacattgaaaattgtatctccaaatagcaactcacgctcgcgggagagttcgc |
39241097 |
T |
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| Q |
118 |
tggtaactctactagaaggggattcatctttgaaagtcacaaatgattttataagcttctgatttcttttgtttttcaaaatctccacttaggaaccatt |
217 |
Q |
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| T |
39241096 |
tggtaactctactagaaggggattcatctttgaaagtcacaaatgattttataagcttctgatttcttttgtttttcaaaatctccacttgggaaccatt |
39240997 |
T |
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| Q |
218 |
ccatacagctacactgcattgtgaggtgccaatatcaattccaactgctatttcaggaagagttagtttcttttcctct |
296 |
Q |
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| T |
39240996 |
ccatactgctacactgcattgtgaggtgccaatatcaattccaactgctatttcaggaaaagctagtttcttttcctct |
39240918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 33 - 279
Target Start/End: Complemental strand, 807526 - 807280
Alignment:
| Q |
33 |
gggtcggtatcaactctcccaatcaagcgtttcacattgaaaattgtatctccaaatagcaactcacgcttgcgggagagttcgctggtaactctactag |
132 |
Q |
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| T |
807526 |
gggtcagtatcaactctgccgatcaagcgtttcatgttgaaaatcgtatctccaaacagcatctcatgctcatgggagaattgactagtaactcctccag |
807427 |
T |
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| Q |
133 |
aaggggattcatctttgaaagtcacaaatgattttataagcttctgatttcttttgtttttcaaaatctccacttaggaaccattccatacagctacact |
232 |
Q |
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| T |
807426 |
aaggagcttcatctttgaatgtcacaaatgacttcataagcttctgatttcttttgtttttcaaaagctccacttcggagccattccacacagcaacgct |
807327 |
T |
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| Q |
233 |
gcattgtgaggtgccaatatcaattccaactgctatttcaggaagag |
279 |
Q |
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| T |
807326 |
acattgtgaggtgccaatatcaattccaatcgctatttcaggaagag |
807280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 44728680 - 44728768
Alignment:
| Q |
191 |
tttcaaaatctccacttaggaaccattccatacagctacactgcattgtgaggtgccaatatcaattccaactgctatttcaggaagag |
279 |
Q |
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| T |
44728680 |
tttccaaatctccactctggaaccattccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcaggaagag |
44728768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 47842146 - 47842114
Alignment:
| Q |
243 |
gtgccaatatcaattccaactgctatttcagga |
275 |
Q |
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| T |
47842146 |
gtgccaatatcaattccaattgctatttcagga |
47842114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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