View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17134_low_82 (Length: 292)

Name: NF17134_low_82
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17134_low_82
NF17134_low_82
[»] chr4 (8 HSPs)
chr4 (1-281)||(17780698-17780977)
chr4 (101-275)||(9167176-9167343)
chr4 (101-272)||(15019276-15019440)
chr4 (101-274)||(39488143-39488309)
chr4 (101-272)||(15017636-15017800)
chr4 (101-275)||(17266691-17266859)
chr4 (85-274)||(34098712-34098895)
chr4 (103-274)||(23090814-23090979)
[»] chr7 (6 HSPs)
chr7 (85-275)||(9595412-9595597)
chr7 (85-275)||(9646375-9646560)
chr7 (120-275)||(32706330-32706480)
chr7 (122-274)||(5247404-5247551)
chr7 (105-195)||(14575555-14575642)
chr7 (105-195)||(14578831-14578918)
[»] chr1 (5 HSPs)
chr1 (101-278)||(22062138-22062308)
chr1 (101-274)||(6473766-6473932)
chr1 (101-274)||(20127063-20127229)
chr1 (120-274)||(24157067-24157215)
chr1 (206-274)||(20190521-20190590)
[»] chr8 (1 HSPs)
chr8 (101-272)||(20730868-20731032)
[»] chr5 (4 HSPs)
chr5 (101-272)||(244434-244598)
chr5 (101-275)||(29950108-29950275)
chr5 (101-275)||(29951746-29951913)
chr5 (101-274)||(4568243-4568409)
[»] chr3 (8 HSPs)
chr3 (101-272)||(5553466-5553630)
chr3 (160-205)||(22271190-22271235)
chr3 (105-195)||(13956962-13957049)
chr3 (105-195)||(15381954-15382041)
chr3 (105-195)||(15387690-15387777)
chr3 (105-195)||(13962695-13962782)
chr3 (239-274)||(16345391-16345426)
chr3 (153-190)||(17236885-17236922)
[»] chr6 (8 HSPs)
chr6 (85-272)||(30518260-30518442)
chr6 (101-274)||(18781745-18781911)
chr6 (101-278)||(20419632-20419802)
chr6 (101-278)||(20414899-20415069)
chr6 (101-274)||(18553331-18553495)
chr6 (108-274)||(6230634-6230795)
chr6 (101-244)||(20417546-20417682)
chr6 (178-274)||(20417683-20417776)
[»] chr2 (3 HSPs)
chr2 (101-272)||(15409793-15409957)
chr2 (101-274)||(6050216-6050382)
chr2 (101-274)||(33809366-33809530)
[»] scaffold0076 (1 HSPs)
scaffold0076 (120-278)||(54759-54912)
[»] scaffold0010 (1 HSPs)
scaffold0010 (101-274)||(136749-136915)
[»] scaffold0075 (1 HSPs)
scaffold0075 (101-275)||(25754-25921)
[»] scaffold0017 (1 HSPs)
scaffold0017 (120-274)||(4604-4753)
[»] scaffold0083 (1 HSPs)
scaffold0083 (101-275)||(33209-33375)
[»] scaffold0585 (1 HSPs)
scaffold0585 (101-274)||(866-1032)
[»] scaffold0146 (3 HSPs)
scaffold0146 (101-274)||(6608-6773)
scaffold0146 (120-274)||(9503-9651)
scaffold0146 (120-274)||(17170-17318)
[»] scaffold0096 (1 HSPs)
scaffold0096 (101-205)||(22608-22708)
[»] scaffold0269 (1 HSPs)
scaffold0269 (206-273)||(1493-1561)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 17780977 - 17780698
Alignment:
Q  1 agtcagactgatgagtgtcgcggaaccgtcataagcgaattaggaatattttttatggaaaaggtgaaaagactttnnnnnnnttgaagaaatgaactgg 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||       | || ||||||||||||    
T  17780977 agtcagactgatgagtgtcgcagaaccgtcataagcgaattaggaatatttttgatggaaaaggtgaaaagattttaaaaaaat-gatgaaatgaactgg 17780879  T
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17780878 agacaggggcgccgcactttttctaatccaagaaagattgataagccggtacatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 17780779  T
Q  201 ggttcgttcaatccataaccataagagaagagctctcaatacacatatgtgtaaaattgtataaaattcaacttccttcat 281  Q
     ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17780778 agttcgatcaatccataaccacaagagaagagctctcaatacacatatgtgtaaaattgtataaaattcaacttccttcat 17780698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 101 - 275
Target Start/End: Complemental strand, 9167343 - 9167176
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| |||||        
T  9167343 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaa---- 9167252  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaacttc 275  Q
    |||| |||||||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  9167251 ggttggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaacttc 9167176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 272
Target Start/End: Original strand, 15019276 - 15019440
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| ||||| |||    
T  15019276 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggat 15019371  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaac 272  Q
    |    |||||||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||| |||||||    
T  15019372 g----gttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataatattcaac 15019440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 274
Target Start/End: Original strand, 39488143 - 39488309
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| ||||| |||    
T  39488143 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggat 39488238  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |     ||||||||| ||||| |||||| | |||||||||||||||||||||||||||| |||||||||| ||||    
T  39488239 g----attcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattccactt 39488309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 272
Target Start/End: Original strand, 15017636 - 15017800
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||| ||||||| |||||||||||||| ||||| |||    
T  15017636 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccataagaaatatgatttcttgataagatcaaggat 15017731  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaac 272  Q
    |||||    |||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||| |||||||    
T  15017732 ggttc----aatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataatattcaac 15017800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 275
Target Start/End: Original strand, 17266691 - 17266859
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaa-tgtgatttcttgataaaatcaaaga 199  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||| |||||||||| | |||||||||||||| ||||| ||    
T  17266691 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcaccacaagaaaatctgatttcttgataagatcaagga 17266786  T
Q  200 tggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaacttc 275  Q
    ||||||    |||||| ||||| |||||| | |||||||||||||||||||||||||||| || |||||||||||||    
T  17266787 tggttc----aatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctacaaaattcaacttc 17266859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 274
Target Start/End: Complemental strand, 34098895 - 34098712
Alignment:
Q  85 tgaagaaatgaactgga--gacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgattt 182  Q
    |||||||||||| ||||  ||||||| |||||||||||  ||||||||| ||||  ||||||| |  |  |||| |||||||||||||||||  | ||||    
T  34098895 tgaagaaatgaaatggatagacagggacgccacacttt--ctaatccaataaag--tgataagtctatagatgcgaggatcgccacaagaaaa-taattt 34098801  T
Q  183 cttgataaaatcaaagatggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |||||||| ||||| ||||||||    |||||| ||||| |||||| | || |||||||||||||| |||||||||| |||||||||||||||    
T  34098800 cttgataagatcaaggatggttc----aatccagaaccacaagagacaaagttctcaatacacataagtgtaaaattctataaaattcaactt 34098712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 274
Target Start/End: Original strand, 23090814 - 23090979
Alignment:
Q  103 acaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagatgg 202  Q
    ||||||| | |||||| |||||||||||||||||| |||||||||| || ||  || ||||||||||||||| |  |||| ||||||| ||||| ||||     
T  23090814 acaggggtgtcacactctttctaatccaagaaagaatgataagccgatggat--aaagatcgccacaagaaaag-aatttattgataagatcaaggatg- 23090909  T
Q  203 ttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
        ||||||| | ||||  |||||| | |||| ||||||||||||||| ||||||| ||||||||| |||||    
T  23090910 ---attcaatctaaaaccgcaagagacaaagctatcaatacacatatgtataaaattctataaaatttaactt 23090979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 85 - 275
Target Start/End: Original strand, 9595412 - 9595597
Alignment:
Q  85 tgaagaaatgaactgga--gacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgattt 182  Q
    |||||||||||| ||||  ||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| ||||||    
T  9595412 tgaagaaatgaaatggatagacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgattt 9595507  T
Q  183 cttgataaaatcaaagatggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaacttc 275  Q
    |||||||| ||||| ||||||||    |||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  9595508 cttgataagatcaaggatggttc----aatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaacttc 9595597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 85 - 275
Target Start/End: Original strand, 9646375 - 9646560
Alignment:
Q  85 tgaagaaatgaactgga--gacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgattt 182  Q
    |||||||||||| ||||  ||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| ||||||    
T  9646375 tgaagaaatgaaatggatagacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgattt 9646470  T
Q  183 cttgataaaatcaaagatggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaacttc 275  Q
    |||||||| ||||| ||||||||    |||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  9646471 cttgataagatcaaggatggttc----aatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaacttc 9646560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 275
Target Start/End: Complemental strand, 32706480 - 32706330
Alignment:
Q  120 tttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagatggttcgttcaatccataac 219  Q
    |||||||||||||||||  ||||||| |  |  |||| ||||| ||||||||||||||||||||||||||| ||||| ||||||||    |||||| |||    
T  32706480 tttctaatccaagaaag--tgataagtctatagatgcgaggattgccacaagaaatgtgatttcttgataagatcaaggatggttc----aatccagaac 32706387  T
Q  220 cataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaacttc 275  Q
    || |||||| | |||||| ||||||||||||||||||||| ||||||||||||||||    
T  32706386 cacaagagacaaagctcttaatacacatatgtgtaaaattctataaaattcaacttc 32706330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 274
Target Start/End: Original strand, 5247404 - 5247551
Alignment:
Q  122 tctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagatggttcgttcaatccataacca 221  Q
    ||||||||||||||||||||||||| | || |||  |||||| |||||| |||| |||||||||||||| ||||| ||||     ||||||||| |||||    
T  5247404 tctaatccaagaaagattgataagctgatgaatg--aggatctccacaaaaaatatgatttcttgataagatcaaggatg----attcaatccagaacca 5247497  T
Q  222 taagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    ||||||| | ||||||||| || |||| |||||||||| || | ||||||||||    
T  5247498 taagagacaaagctctcaacactcatacgtgtaaaattctacacaattcaactt 5247551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 14575555 - 14575642
Alignment:
Q  105 aggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatca 195  Q
    |||||||||||||| |||||||||||||| ||| |||||||||  || |||  |||||| |||||||||| | ||||||||||||| ||||    
T  14575555 aggggcgccacactctttctaatccaagagagaatgataagcctatggatg--aggatcaccacaagaaaag-gatttcttgataagatca 14575642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 14578831 - 14578918
Alignment:
Q  105 aggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatca 195  Q
    |||||||||||||| |||||||||||||| ||| |||||||||  || |||  |||||| |||||||||| | ||||||||||||| ||||    
T  14578831 aggggcgccacactctttctaatccaagagagaatgataagcctatggatg--aggatcaccacaagaaaag-gatttcttgataagatca 14578918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 278
Target Start/End: Original strand, 22062138 - 22062308
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| |||||        
T  22062138 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaa---- 22062229  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaacttcctt 278  Q
    |||| |||||||||| ||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  22062230 ggttggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaacttcctt 22062308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 6473932 - 6473766
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| ||||||| ||||||||||||||||||||||||| ||||| |||    
T  6473932 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgtcacaagaaatgtgatttcttgataagatcaaggat 6473837  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |     ||||||||| ||||| |||||| |  ||||||||||||||||||||||||||| |||||||||||||||    
T  6473836 g----attcaatccagaaccacaagagacaaggctctcaatacacatatgtgtaaaattctataaaattcaactt 6473766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 20127229 - 20127063
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||   |||||| |  || |||| |||||||||||||||||| |||||||||||||| ||||| |||    
T  20127229 agacagggacgccacacttt--ctaatccaagaaagc--gataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggat 20127134  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |    |||||||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||| |||||||||    
T  20127133 g----gttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataatattcaactt 20127063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 274
Target Start/End: Original strand, 24157067 - 24157215
Alignment:
Q  120 tttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagatggttcgttcaatccataac 219  Q
    |||||||| ||||||||  ||||||| |  || |||| |||||| ||||||||||  |||||||||||||| ||||| |||||||||    |||||||||    
T  24157067 tttctaattcaagaaag--tgataagtcaatggatgcgaggatcaccacaagaaaa-tgatttcttgataagatcaaggatggttcg----atccataac 24157159  T
Q  220 cataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    || |||||| | |||||||||||||||||||||||||||| |||||||||| ||||    
T  24157160 cacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattctactt 24157215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 20190521 - 20190590
Alignment:
Q  206 gttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |||||||||| ||||| |||||| | ||||||||||||||||| |||||||||| || ||| ||||||||    
T  20190521 gttcaatccagaaccacaagagacaaagctctcaatacacataagtgtaaaattctacaaagttcaactt 20190590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 101 - 272
Target Start/End: Complemental strand, 20731032 - 20730868
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| |||||        
T  20731032 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaa---- 20730941  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaac 272  Q
    |||| |||||||||| ||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||    
T  20730940 ggttggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaac 20730868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 101 - 272
Target Start/End: Original strand, 244434 - 244598
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| ||||| |||    
T  244434 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggat 244529  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaac 272  Q
    |||||    |||||| ||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||    
T  244530 ggttc----aatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataaaattcaac 244598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 275
Target Start/End: Complemental strand, 29950275 - 29950108
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| |||||        
T  29950275 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaa---- 29950184  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaacttc 275  Q
    |||| |||||||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||| ||||||||||    
T  29950183 ggttggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataatattcaacttc 29950108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 101 - 275
Target Start/End: Complemental strand, 29951913 - 29951746
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||| ||||||||||| |||||||||||||| |||||        
T  29951913 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcaccacaagaaatatgatttcttgataagatcaa---- 29951822  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaacttc 275  Q
    |||| |||||||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||| ||||||||||    
T  29951821 ggttggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataatattcaacttc 29951746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 4568409 - 4568243
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||| ||||  ||||||| |  || |||| |||||||||||||||||| |||||| ||||||| |||||  ||    
T  4568409 agacagggacgccacacttt--ctaatccaaaaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgattttttgataagatcaagaat 4568314  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |    |||||||||| ||||| |||||| | ||||||||||||||||| || ||||||| |||||||||||||||    
T  4568313 g----gttcaatccagaaccacaagagacaaagctctcaatacacataagtataaaattctataaaattcaactt 4568243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 101 - 272
Target Start/End: Complemental strand, 5553630 - 5553466
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| ||||| |||    
T  5553630 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatgtatgcgaggatcgccacaagaaatatgatttcttgataagatcaatgat 5553535  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaac 272  Q
    |||||    |||||| ||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||    
T  5553534 ggttc----aatccagaaccacaagagataaagctctcaatacacatatgtgtaaaattctataaaattcaac 5553466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 22271235 - 22271190
Alignment:
Q  160 gatcgccacaagaaatgtgatttcttgataaaatcaaagatggttc 205  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||    
T  22271235 gatcgccacaagaaatgtgatttcttgataagatcaatgatggttc 22271190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 13956962 - 13957049
Alignment:
Q  105 aggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatca 195  Q
    |||||||||||||| |||||||||||||| ||| |||||||||  || |||  |||||| |||||||||| | ||||||||||||| ||||    
T  13956962 aggggcgccacactctttctaatccaagagagaatgataagcctatggatg--aggatcaccacaagaaaag-gatttcttgataagatca 13957049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 15382041 - 15381954
Alignment:
Q  105 aggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatca 195  Q
    |||||||||||||| |||||||||||||| ||| |||||||||  || |||  |||||| |||||||||| | ||||||||||||| ||||    
T  15382041 aggggcgccacactctttctaatccaagagagaatgataagcctatggatg--aggatcaccacaagaaaag-gatttcttgataagatca 15381954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 15387777 - 15387690
Alignment:
Q  105 aggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatca 195  Q
    |||||||||||||| |||||||||||||| ||| |||||||||  || |||  |||||| |||||||||| | ||||||||||||| ||||    
T  15387777 aggggcgccacactctttctaatccaagagagaatgataagcctatggatg--aggatcaccacaagaaaag-gatttcttgataagatca 15387690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 13962695 - 13962782
Alignment:
Q  105 aggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatca 195  Q
    |||||||||| ||| |||||||||||||| ||| |||||||||  || |||  |||||| |||||||||| | ||||||||||||| ||||    
T  13962695 aggggcgccatactctttctaatccaagagagaatgataagcctatggatg--aggatcaccacaagaaaag-gatttcttgataagatca 13962782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 274
Target Start/End: Original strand, 16345391 - 16345426
Alignment:
Q  239 atacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |||||||||||||||||||| |||||||||||||||    
T  16345391 atacacatatgtgtaaaattctataaaattcaactt 16345426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 17236885 - 17236922
Alignment:
Q  153 atgcaaggatcgccacaagaaatgtgatttcttgataa 190  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  17236885 atgcgaggatcgccacaagaaatgtgattttttgataa 17236922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 272
Target Start/End: Original strand, 30518260 - 30518442
Alignment:
Q  85 tgaagaaatgaactgga--gacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgattt 182  Q
    |||||||||||| ||||  ||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| ||||||    
T  30518260 tgaagaaatgaaatggatagacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgattt 30518355  T
Q  183 cttgataaaatcaaagatggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaac 272  Q
    |||||||| ||||| ||||    |||||||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||| |||||||    
T  30518356 cttgataagatcaaggatg----gttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataatattcaac 30518442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 18781911 - 18781745
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| |||||        
T  18781911 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaa---- 18781820  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |||| |||||||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||| |||||||||    
T  18781819 ggttggttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataatattcaactt 18781745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 101 - 278
Target Start/End: Original strand, 20419632 - 20419802
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| |||||        
T  20419632 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaa---- 20419723  T
Q  201 ggttcgttcaatccataaccataagagaagag-ctctcaatacacatatgtgtaaaattgtataaaattcaacttcctt 278  Q
    |||| |||||||||| ||||| ||||||  || |||||||||||||||||||||||||| |||||||||||||| ||||    
T  20419724 ggttggttcaatccagaaccacaagagacaagactctcaatacacatatgtgtaaaattctataaaattcaactccctt 20419802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 278
Target Start/End: Original strand, 20414899 - 20415069
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  |||||| |||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| |||||        
T  20414899 agacagggacgccacacttt--ctaatctaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaa---- 20414990  T
Q  201 ggttcgttcaatccataaccataagagaagag-ctctcaatacacatatgtgtaaaattgtataaaattcaacttcctt 278  Q
    |||| |||||||||| ||||| ||||||  || |||||||||||||||||||||||||| |||||||||||||| ||||    
T  20414991 ggttggttcaatccagaaccacaagagacaaggctctcaatacacatatgtgtaaaattctataaaattcaactccctt 20415069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 18553495 - 18553331
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| |||||        
T  18553495 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaa---- 18553404  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |||| |||||||||| ||||| |||||| |  |||||||||||||  |||||||||||| |||||||||||||||    
T  18553403 ggttggttcaatccagaaccacaagagacaaggctctcaatacac--atgtgtaaaattctataaaattcaactt 18553331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 274
Target Start/End: Original strand, 6230634 - 6230795
Alignment:
Q  108 ggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagatggttcgt 207  Q
    ||||||||||| |||  ||||||| ||||| |||||||||| || ||| |  |||||||| |||||||||||||||||||||| ||||| ||||||||      
T  6230634 ggcgccacactcttttcaatccaaaaaagaatgataagccgatggatgaa--gatcgccataagaaatgtgatttcttgataagatcaaggatggttc-- 6230729  T
Q  208 tcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
      |||||| ||||| |||||  | | |||||||||||||||||||||||||| || ||||||||||||    
T  6230730 --aatccagaaccacaagagtcaaaactctcaatacacatatgtgtaaaattctacaaaattcaactt 6230795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 244
Target Start/End: Original strand, 20417546 - 20417682
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| |||||        
T  20417546 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaa---- 20417637  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacac 244  Q
    |||| |||||||||| ||||| |||||| |  |||||||||||||    
T  20417638 ggttggttcaatccagaaccacaagagacaaggctctcaatacac 20417682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 20417683 - 20417776
Alignment:
Q  178 gatttcttgataaaatcaaagatggttcgttcaatccataaccataagagaagag-ctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    ||||||||||||| |||||    |||| |||||||||| ||||| ||||||  || |||||||||||||||||||||||||| |||||||||||||||    
T  20417683 gatttcttgataagatcaa----ggttggttcaatccagaaccacaagagacaaggctctcaatacacatatgtgtaaaattctataaaattcaactt 20417776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 272
Target Start/End: Complemental strand, 15409957 - 15409793
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| ||||| |||    
T  15409957 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggat 15409862  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaac 272  Q
    |    |||||||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||| |||||||    
T  15409861 g----gttcaatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataatattcaac 15409793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 274
Target Start/End: Original strand, 6050216 - 6050382
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| ||||| |||    
T  6050216 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggat 6050311  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |    |||||||||| ||||| |||||| | |||||| ||||||||||||||||||||| ||||| |||||||||    
T  6050312 g----gttcaatccagaaccacaagagacaaagctcttaatacacatatgtgtaaaattctataatattcaactt 6050382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 33809530 - 33809366
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    ||||| |||||||||||| |||| ||||||||||||| |||||||||| || |||| ||||||||||||||||| |  |||      ||| || || |||    
T  33809530 agacaagggcgccacactctttccaatccaagaaagaatgataagccgatggatgcgaggatcgccacaagaaaagaaatt------taagattaaggat 33809437  T
Q  201 ggttcgttcaatccataaccataagagaagag-ctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |||| |    ||||| ||||| ||||||  || ||||||| |||||||||||||||||| |||||||||||||||    
T  33809436 ggtttg----atccaaaaccacaagagacaagactctcaacacacatatgtgtaaaattctataaaattcaactt 33809366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 54912 - 54759
Alignment:
Q  120 tttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagatggttcgttcaatccataac 219  Q
    |||||||||||||||||  ||||||| |  || |||| || ||||||||||||||| |||||||||||||| |||||    |||| |||||||||| |||    
T  54912 tttctaatccaagaaag--tgataagtctatggatgcgagtatcgccacaagaaatatgatttcttgataagatcaa----ggttggttcaatccagaac 54819  T
Q  220 cataagagaagag-ctctcaatacacatatgtgtaaaattgtataaaattcaacttcctt 278  Q
    || ||||||  || |||||||||||||||||||||||||| |||||||||||||||||||    
T  54818 cacaagagacaaggctctcaatacacatatgtgtaaaattctataaaattcaacttcctt 54759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 136915 - 136749
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| ||||| |||    
T  136915 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggat 136820  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    ||||     |||||| ||||| |||||| | |||||||||||||||||||||||||||| ||||| |||||||||    
T  136819 ggttt----aatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctataatattcaactt 136749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 101 - 275
Target Start/End: Original strand, 25754 - 25921
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  |||||||    || |||| |||||||||||||||||| |||||||||||||| |||||        
T  25754 agacagggacgccacacttt--ctaatccaagaaag--tgataagtatatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaa---- 25845  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaacttc 275  Q
    |||| |||||||||| ||| | |||||| | |||||||| ||||||||||||||||||| ||||||||||||||||    
T  25846 ggttggttcaatccagaactacaagagacaaagctctcactacacatatgtgtaaaattctataaaattcaacttc 25921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 120 - 274
Target Start/End: Original strand, 4604 - 4753
Alignment:
Q  120 tttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagatggttcgttcaatccataac 219  Q
    |||||||||||||||||  ||||||| |  || |||||||||||||| |||||||| |||||||||||||| |||||    |||| |||||||||| |||    
T  4604 tttctaatccaagaaag--tgataagtctatggatgcaaggatcgccgcaagaaatatgatttcttgataagatcaa----ggttggttcaatccagaac 4697  T
Q  220 cataagagaagag-ctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    || ||||||  || |||||||||||||||||||||||||| ||||| |||||||||    
T  4698 cacaagagacaaggctctcaatacacatatgtgtaaaattctataatattcaactt 4753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 275
Target Start/End: Complemental strand, 33375 - 33209
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  |||||||||||||  |||||||| |  || |||| |||||||||||||||||  | |||||||||||| ||||| |||    
T  33375 agacagggacgccacacttt--ctaatccaagaaa--ttgataagtctatggatgcgaggatcgccacaagaaaa-taatttcttgataagatcaaggat 33281  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaacttc 275  Q
    |||||    |||||| ||||| |||||| | |||||||||||||||||||||||||||| || |||||||||||||    
T  33280 ggttc----aatccagaaccacaagagacaaagctctcaatacacatatgtgtaaaattctacaaaattcaacttc 33209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 274
Target Start/End: Original strand, 866 - 1032
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||  |||||||||||||||||| |||||||||||||| ||||| |||    
T  866 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgagaggatcgccacaagaaatatgatttcttgataagatcaaggat 961  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |    |||||||||| ||||| |||||| | || ||||||||||||||||||||||||| ||||| |||| ||||    
T  962 g----gttcaatccagaaccacaagagacaaagttctcaatacacatatgtgtaaaattctataatattccactt 1032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 6773 - 6608
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||    ||| |||||||| |||||  ||    
T  6773 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaaaaaaatt-cttgataagatcaagaat 6679  T
Q  201 ggttcgttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    |||||    |||||| ||||| |||||| | ||||||||||||||||| |||||||||| |||||||||||||||    
T  6678 ggttc----aatccaaaaccacaagagacaaagctctcaatacacataagtgtaaaattctataaaattcaactt 6608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 274
Target Start/End: Complemental strand, 9651 - 9503
Alignment:
Q  120 tttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagatggttcgttcaatccataac 219  Q
    |||||||||||||||||  ||||||| ||||| |||| |||||| |||||||||| |  ||| |||||||| | |||  |||||||    |||||| |||    
T  9651 tttctaatccaagaaag--tgataagtcggtggatgcgaggatccccacaagaaaagaaatt-cttgataagaacaagaatggttc----aatccagaac 9559  T
Q  220 cataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    || |||||| | ||||||||||||||||| |||||||||| ||| |||||||||||    
T  9558 cacaagagacaaagctctcaatacacataagtgtaaaattctatcaaattcaactt 9503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 274
Target Start/End: Complemental strand, 17318 - 17170
Alignment:
Q  120 tttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagatggttcgttcaatccataac 219  Q
    |||||||||||||||||  ||||||| ||||| |||| |||||| |||||||||| |  ||| |||||||| | |||  |||||||    |||||| |||    
T  17318 tttctaatccaagaaag--tgataagtcggtggatgcgaggatccccacaagaaaagaaatt-cttgataagaacaagaatggttc----aatccagaac 17226  T
Q  220 cataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaactt 274  Q
    || |||||| | ||||||||||||||||| |||||||||| ||| |||||||||||    
T  17225 cacaagagacaaagctctcaatacacataagtgtaaaattctatcaaattcaactt 17170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 22608 - 22708
Alignment:
Q  101 agacaggggcgccacactttttctaatccaagaaagattgataagccggtgcatgcaaggatcgccacaagaaatgtgatttcttgataaaatcaaagat 200  Q
    |||||||| |||||||||||  ||||||||||||||  ||||||| |  || |||| |||||||||||||||||| |||||||||||||| ||||| |||    
T  22608 agacagggacgccacacttt--ctaatccaagaaag--tgataagtctatggatgcgaggatcgccacaagaaatatgatttcttgataagatcaaggat 22703  T
Q  201 ggttc 205  Q
    |||||    
T  22704 ggttc 22708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 1493 - 1561
Alignment:
Q  206 gttcaatccataaccataagaga-agagctctcaatacacatatgtgtaaaattgtataaaattcaact 273  Q
    |||||||||| |||||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||    
T  1493 gttcaatccagaaccataagagacaaagctctcaatacacataagtgtaaaattctataaaattcaact 1561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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