View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_83 (Length: 289)
Name: NF17134_low_83
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_83 |
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Alignment Details
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 26015857 - 26015794
Alignment:
| Q |
217 |
aagacaattaagtgaaaattcaaaatgcatctactaactaaatattaaatcacctaagaataat |
280 |
Q |
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| T |
26015857 |
aagacaattagttgaaaactcaaaatgtatctactaactaaatattaaatcacctaagaataat |
26015794 |
T |
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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 56110091 - 56110028
Alignment:
| Q |
217 |
aagacaattaagtgaaaattcaaaatgcatctactaactaaatattaaatcacctaagaataat |
280 |
Q |
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|||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
56110091 |
aagacaattagttgaaaactcaaaatgtatctactaactaaatattaaatcacctaagaataat |
56110028 |
T |
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