View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17134_low_89 (Length: 268)
Name: NF17134_low_89
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_89 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 5850537 - 5850778
Alignment:
| Q |
10 |
aagaatatcatgtcactattgtatattacaggtactgaaatgttatttaaaccttcagttttgttatgtcacaactcattttaatttattttttccgaac |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5850537 |
aagaaaatcatgtcactattgtatattacaggtactgaaatgttatttaaaccttcagttttgttatgtcacaactcattttaatttattttttccgaac |
5850636 |
T |
|
| Q |
110 |
ttcgttgttttttcttgcagtggatatatgcctccagaatatgccgtgcatggatctttctcaataaagtctgatgtttttagtttcggagtcgtcgtac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5850637 |
ttcgttgttttttcttgcagtggatatatgcctccagaatatgccgtgcatggatctttctcaataaagtctgatgtttttagtttcggagtcgtcgtac |
5850736 |
T |
|
| Q |
210 |
ttgagataattagcggtaggaagaatcgtggattttctgacc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5850737 |
ttgagataattagcggtaggaagaatcgtggattttctgacc |
5850778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 5453283 - 5453058
Alignment:
| Q |
26 |
tattgtatattacaggtactgaaatgttatttaaaccttcagttttgttatgtcacaactcattttaat-ttattttttccgaacttcgttgttttttct |
124 |
Q |
| |
|
|||||| | ||||||||||||||| | |||||||||||||| ||||| ||||||||||| | ||||||| |||| |||| | |||||| |||| ||||| |
|
|
| T |
5453283 |
tattgtgtgttacaggtactgaaa-gctatttaaaccttcatttttgctatgtcacaaccccttttaatattatatttttccaacttcaatgttctttct |
5453185 |
T |
|
| Q |
125 |
tgcagtggatatatgcctccagaatatgccgtgcatggatctttctcaataaagtctgatgtttttagtttcggagtcgtcgtacttgagataattagcg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
5453184 |
tgcagtggatatatgcctccagaatatgcggtgcatgggtctttctcaataaaatctgatgtttttagttttggagtcgttgtacttgagataattagcg |
5453085 |
T |
|
| Q |
225 |
gtaggaagaatcgtggattttctgacc |
251 |
Q |
| |
|
||||||||||||| ||||||| ||||| |
|
|
| T |
5453084 |
gtaggaagaatcgcggattttgtgacc |
5453058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 26 - 244
Target Start/End: Complemental strand, 5444760 - 5444541
Alignment:
| Q |
26 |
tattgtatattacaggtactgaaatgttatttaaaccttcagttttgttatgtcacaactcattttaat-ttattttttccgaacttcgttgttttttct |
124 |
Q |
| |
|
|||||| | ||||||||||||||| | ||||||||| |||| || || ||||||||||| | ||||||| |||| |||| | |||||| |||| ||||| |
|
|
| T |
5444760 |
tattgtgtgttacaggtactgaaaagctatttaaactttcatttctgctatgtcacaaccccttttaatgttatatttttccaacttcaatgttctttct |
5444661 |
T |
|
| Q |
125 |
tgcagtggatatatgcctccagaatatgccgtgcatggatctttctcaataaagtctgatgtttttagtttcggagtcgtcgtacttgagataattagcg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
5444660 |
tgcagtggatatatgcctccagaatatgcggtgcatgggtctttctcaataaaatctgatgtttttagttttggagtcgttgtacttgagataattagcg |
5444561 |
T |
|
| Q |
225 |
gtaggaagaatcgtggattt |
244 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
5444560 |
gtaggaagaatcgcggattt |
5444541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 107 - 249
Target Start/End: Original strand, 5804098 - 5804240
Alignment:
| Q |
107 |
aacttcgttgttttttcttgcagtggatatatgcctccagaatatgccgtgcatggatctttctcaataaagtctgatgtttttagtttcggagtcgtcg |
206 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||| | |
|
|
| T |
5804098 |
aacttcattgttttttcttgcagtggatatatgcctccagaatatgcagtgcatggatctttctctataaaatctgatgtttttagcttcggagtcgttg |
5804197 |
T |
|
| Q |
207 |
tacttgagataattagcggtaggaagaatcgtggattttctga |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5804198 |
tacttgagataattagcggtaggaagaatcgcggattttctga |
5804240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 44 - 251
Target Start/End: Complemental strand, 5483134 - 5482925
Alignment:
| Q |
44 |
ctgaaatgttatttaaaccttcagttttgttatgtcacaactcattttaatttattt-tttccgaacttcgttgtttttt-cttgcagtggatatatgcc |
141 |
Q |
| |
|
|||||| ||||||||||||||||||| | |||| ||||| ||||||| || | |||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
5483134 |
ctgaaaagttatttaaaccttcagttcttccatgttgaaactccttttaatatacatctttccgaacttcaatgtttttttcttgcagtggatatatgcc |
5483035 |
T |
|
| Q |
142 |
tccagaatatgccgtgcatggatctttctcaataaagtctgatgtttttagtttcggagtcgtcgtacttgagataattagcggtaggaagaatcgtgga |
241 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
5483034 |
tccagaatatgcagtgcatgggtctttctcaataaaatctgatgtttttagctttggagtcgttgtacttgagataattagcggtagaaagaatcgcgga |
5482935 |
T |
|
| Q |
242 |
ttttctgacc |
251 |
Q |
| |
|
|||| ||||| |
|
|
| T |
5482934 |
ttttgtgacc |
5482925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 35 - 245
Target Start/End: Original strand, 5829781 - 5829992
Alignment:
| Q |
35 |
ttacaggtactgaaatgttatttaaaccttcagttttgttatgtcacaactcattttaatttat-tttttccgaacttcgttgttttttcttgcagtgga |
133 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||| || ||||| ||||||| ||| ||| ||| ||||||| |||||| |||||| |||||||||||| |
|
|
| T |
5829781 |
ttacagttactgaaaagttatttaaaatttcagttctgctatgttacaactcctttcaatgtatgtttttcctaacttcaatgttttctcttgcagtgga |
5829880 |
T |
|
| Q |
134 |
tatatgcctccagaatatgccgtgcatggatctttctcaataaagtctgatgtttttagtttcggagtcgtcgtacttgagataattagcggtaggaaga |
233 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | |||||||||||| |||||||||||||| || ||||| || ||||||||||| |||||||| | ||||| |
|
|
| T |
5829881 |
tatatgcctccagagtatgcagtgcatgggtttttctcaataaaatctgatgtttttagctttggagttgttgtacttgagatcattagcggcacgaaga |
5829980 |
T |
|
| Q |
234 |
atcgtggatttt |
245 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5829981 |
atcgtggatttt |
5829992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 117 - 251
Target Start/End: Original strand, 5855833 - 5855967
Alignment:
| Q |
117 |
ttttttcttgcagtggatatatgcctccagaatatgccgtgcatggatctttctcaataaagtctgatgtttttagtttcggagtcgtcgtacttgagat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
5855833 |
ttttttcttgcagtggatatatgcctccagaatatgcagtgcatggatctttctcaataaaatctgatgtttttagcttcggagtcgttgtacttgagat |
5855932 |
T |
|
| Q |
217 |
aattagcggtaggaagaatcgtggattttctgacc |
251 |
Q |
| |
|
||| ||||||| ||||||| | ||||||| ||||| |
|
|
| T |
5855933 |
aatcagcggtaagaagaatagcggattttgtgacc |
5855967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 5524264 - 5524046
Alignment:
| Q |
29 |
tgtatattacaggtactgaaatgttatttaaaccttcagttttgttatgtcacaactcattttaattt-attttttccgaacttcgttgttt--tttctt |
125 |
Q |
| |
|
||||||||| |||| |||| | ||||| ||||||||| ||| || |||| |||||| ||||||||| | ||||||| || ||| | ||| |||||| |
|
|
| T |
5524264 |
tgtatattataggttctgagaagttatataaaccttccgttctgccatgttgcaactccttttaatttgaatttttcctaaattcaatatttcttttctt |
5524165 |
T |
|
| Q |
126 |
gcagtggatatatgcctccagaatatgccgtgcatggatctttctcaataaagtctgatgtttttagtttcggagtcgtcgtacttgagataattagcgg |
225 |
Q |
| |
|
|||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
5524164 |
gcagtggatacatgcctccagaatatgcagcgcatggatctttctcaataaaatctgatgtttttagctttggagtcgttgtacttgagataattagcgg |
5524065 |
T |
|
| Q |
226 |
taggaagaatcgtggattt |
244 |
Q |
| |
|
||| ||||||| ||||||| |
|
|
| T |
5524064 |
tagaaagaatcatggattt |
5524046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 20341984 - 20341849
Alignment:
| Q |
116 |
gttttttcttgcagtggatatatgcctccagaatatgccgtgcatggatctttctcaataaagtctgatgtttttagtttcggagtcgtcgtacttgaga |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| || ||||| | |
|
|
| T |
20341984 |
gttttttcttgcagtggatacatgcctccagaatatgctgtgcatggatcattctcaataaaatctgatgtttttagttttggagtcgttgtgcttgaaa |
20341885 |
T |
|
| Q |
216 |
taattagcggtaggaagaatcgtggattttctgacc |
251 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
20341884 |
taattagcggcaggaagaatcgcggattttgtgacc |
20341849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 121 - 244
Target Start/End: Complemental strand, 5501297 - 5501174
Alignment:
| Q |
121 |
ttcttgcagtggatatatgcctccagaatatgccgtgcatggatctttctcaataaagtctgatgtttttagtttcggagtcgtcgtacttgagataatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | ||||||| ||||||||||| |||||||||| |||||| ||||| || |||||||||||||| |
|
|
| T |
5501297 |
ttcttgcagtggatatatgcctccagaatatgcagcggatggatccttctcaataaaatctgatgtttatagttttggagttgttctacttgagataatt |
5501198 |
T |
|
| Q |
221 |
agcggtaggaagaatcgtggattt |
244 |
Q |
| |
|
|||||||| ||||||| ||||||| |
|
|
| T |
5501197 |
agcggtagaaagaatcatggattt |
5501174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 244
Target Start/End: Complemental strand, 5488481 - 5488359
Alignment:
| Q |
122 |
tcttgcagtggatatatgcctccagaatatgccgtgcatggatctttctcaataaagtctgatgtttttagtttcggagtcgtcgtacttgagataatta |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | ||||||| ||||||||||| ||||||||||| || || ||||| || ||||||||||||||| |
|
|
| T |
5488481 |
tcttgcagtggatatatgcctccagaatatgcagcggatggatccttctcaataaaatctgatgttttcagctttggagttgttctacttgagataatta |
5488382 |
T |
|
| Q |
222 |
gcggtaggaagaatcgtggattt |
244 |
Q |
| |
|
||||||| ||||||| ||||||| |
|
|
| T |
5488381 |
gcggtagaaagaatcatggattt |
5488359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 36209942 - 36209905
Alignment:
| Q |
125 |
tgcagtggatatatgcctccagaatatgccgtgcatgg |
162 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
36209942 |
tgcagtggatatatggctccagaatatgccatgcatgg |
36209905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University