View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_90 (Length: 268)
Name: NF17134_low_90
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_90 |
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| [»] scaffold0215 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 18851032 - 18851285
Alignment:
| Q |
1 |
cataggaacactattttatgaagcacggacactcattggattaggcatgttagtgtccgtgtcatgtgcagtatccatgtctatatccgggcttcataga |
100 |
Q |
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| T |
18851032 |
catatgaacactattctatgaagcacggacactcattggattaggcatgttagtgtctgtgtcatgtgcagtatccatgtctatatccgtgcttcataga |
18851131 |
T |
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| Q |
101 |
cactagttcaatcacaactctgttttagagaaggtaattaagcttcctagttttataaatagttgaataattttagtaacttgtgattacccatgttatt |
200 |
Q |
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| T |
18851132 |
cactagttcaatcacaactctgttttagagaaggtaattaagcttcctagttttataaatagttgaataa-tttagtaacttgtgattacccatgttatt |
18851230 |
T |
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| Q |
201 |
caactactttgtctattaacaaattcaagtcattactagttaagtgagataaatg |
255 |
Q |
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| T |
18851231 |
caactactttgtctattaacaaattcaagtcattactagttaagtgagataaatg |
18851285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 16353565 - 16353316
Alignment:
| Q |
6 |
gaacactattttatgaagcacggacactcattggattaggcatgttagtgtccgtgtcatgtgcagtatccatgtctatatccgggcttcatagacacta |
105 |
Q |
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| T |
16353565 |
gaacactattatgtgaagcacgaacactccttggattaggcatgttagtgtctgtgtcatgtgcagtatctatgtctataaccatgcttcatagacacta |
16353466 |
T |
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| Q |
106 |
gttcaatcacaactctgttttagagaaggtaattaagcttcctagttttataaatagttgaataattttagtaacttgtgattacccatgttattcaact |
205 |
Q |
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| T |
16353465 |
gttcaatcacaactctgttttagagaaggtaattaagcttcctagttttataaatagttgaataattttagtaacttgtgattacccaagttattcaact |
16353366 |
T |
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| Q |
206 |
actttgtctattaacaaattcaagtcattactagttaagtgagataaatg |
255 |
Q |
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| T |
16353365 |
actttgtctattaacaaattcaagtcattactagttaagtgagataaatg |
16353316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 31060916 - 31060945
Alignment:
| Q |
17 |
tatgaagcacggacactcattggattaggc |
46 |
Q |
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| T |
31060916 |
tatgaagcacggacactcattggattaggc |
31060945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0215 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 37 - 255
Target Start/End: Complemental strand, 23353 - 23135
Alignment:
| Q |
37 |
tggattaggcatgttagtgtccgtgtcatgtgcagtatccatgtctatatccgggcttcatagacactagttcaatcacaactctgttttagagaaggta |
136 |
Q |
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| T |
23353 |
tggattaggcatgttagtgtccgtgtcatgtgcagtatccatgtctatatccgtgcttcatagacactagttcaatcacaactctgttttagagaaggta |
23254 |
T |
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| Q |
137 |
attaagcttcctagttttataaatagttgaataattttagtaacttgtgattacccatgttattcaactactttgtctattaacaaattcaagtcattac |
236 |
Q |
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| T |
23253 |
attaagcttcctagttttataaatagttgaataattttagtaacttgtgattacccatgttattcaactactttgtctattaacaaattcaagtcattac |
23154 |
T |
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| Q |
237 |
tagttaagtgagataaatg |
255 |
Q |
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| T |
23153 |
tagttaagtgagataaatg |
23135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0215; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23414 - 23353
Alignment:
| Q |
1 |
cataggaacactattttatgaagcacggacactcattggattaggcatgttagtgtccgtgt |
62 |
Q |
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| T |
23414 |
catatgaacactattctatgaagcacggacactcattgaattaggcatgttagtgtccgtgt |
23353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 1389957 - 1389923
Alignment:
| Q |
16 |
ttatgaagcacggacactcattggattaggcatgt |
50 |
Q |
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| T |
1389957 |
ttatgaagcacggacactccttggattaggcatgt |
1389923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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