View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_92 (Length: 264)
Name: NF17134_low_92
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_92 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 41567017 - 41566772
Alignment:
| Q |
1 |
cataagtcatgatagcttattcaatataagtttacaagttggcttattaaacaagattatgaatctcattggccctcaagactatttgtccttgctaatg |
100 |
Q |
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| T |
41567017 |
cataagtcatgatagcttattcaatataagtttacaagttggcttattaaacaagattatgaatctcattggccctcaagactatgtgtccttgctaatg |
41566918 |
T |
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| Q |
101 |
acaagtattaagggtaggataaatcatatgcataagggaaactgtgatgagaccaaatgggattctagactaatttcaaaatataacgtaactcttgttt |
200 |
Q |
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| T |
41566917 |
acaagtattaagggtaggataaatcatatgcataagggaaactgtgatgagaccaaatgggattctagactaatttcaaaatataacgtaactcttgttt |
41566818 |
T |
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| Q |
201 |
ttaccgttgactcaaaggggtgtggtaactttactaaagtacaaga |
246 |
Q |
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| T |
41566817 |
ttaccgttgactcaaaggggtgtggtaactttactaaagtacaaga |
41566772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 41434498 - 41434674
Alignment:
| Q |
5 |
agtcatgatagcttattcaatataagtttacaagttggcttattaaacaagattatgaatctcattggccctcaagactatttgtccttgctaatgacaa |
104 |
Q |
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||||||| ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41434498 |
agtcatggtagtttcttcaatacaagtttacaagttggcttattaaacaagattatgaatctcattggccctcaagactacttgtccttgctaatgacaa |
41434597 |
T |
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| Q |
105 |
gtattaagggtaggataaatcatatgcataagggaaactgtgatgagaccaaatgggattctagactaatttcaaaa |
181 |
Q |
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| T |
41434598 |
gtattaagggtaggataaatcatatgcataagggaaattgtgacaagaccaaatgggattttagactaatttcaaaa |
41434674 |
T |
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