View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_95 (Length: 255)
Name: NF17134_low_95
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_95 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 21600043 - 21599799
Alignment:
| Q |
10 |
cacagatacatgtccatatggatgcaccctcttcgggatctacatgaaaggcagagtagttattatcatattatattcaggttatgatcactgtctcctc |
109 |
Q |
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| T |
21600043 |
cacaaatacatgtccatatagatgcaccctcttcgggatctatatgaaaggcagagtagttattatcatattatattcaggttatgatcactgtctcctc |
21599944 |
T |
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| Q |
110 |
atttgacataaaaacaaaagtacatacctgagtggcaatcgcatgattttgaacaattagcaagagagttgctttgattcccttcaaaagaagaacatct |
209 |
Q |
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| T |
21599943 |
atttgacataaaa-caaaagtacatacctgagtggcaatcgcatgattttgaacaattagcaagagagttgctttgattcccttcaaaagaagaacatct |
21599845 |
T |
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| Q |
210 |
acatttccacttgtttaggacagatgtatcagatgcttcatctgcc |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21599844 |
acatttccacttgtttaggacagatgtatcagatgcttcatctgcc |
21599799 |
T |
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