View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_98 (Length: 252)
Name: NF17134_low_98
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_98 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 45881917 - 45882153
Alignment:
| Q |
16 |
gtttctagatatccttgcatcttggggacaaaatgcaagttccaacaacagcatctttgaccttaaaaaatgacagtatgtgaaggataatatagtcatg |
115 |
Q |
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| T |
45881917 |
gtttctagatatccttgcatcttggggacaaaatgcaagttccaacaacggcatctttgaccttaaaaaatgaaagtatgtgaaggataatatagtcatg |
45882016 |
T |
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| Q |
116 |
taagtcacttgagtctatctacgttttcactcgcgctgagcattaatctcttcatcggtggtgggatgatgccctcatcagatcaattagacattcaggt |
215 |
Q |
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| T |
45882017 |
taagtcacttgagtctatctacgttttcactcgcgctgagcattaatctcttcatcggtggtgggatgatggcctcatcagatcaattagacattcaggt |
45882116 |
T |
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| Q |
216 |
tataatacctaataatcataaaagcttaaaacaacac |
252 |
Q |
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| T |
45882117 |
tataatacctaataatcataaaagcttaaaacaacac |
45882153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 45856889 - 45857118
Alignment:
| Q |
16 |
gtttctagatatccttgcatcttggggacaaaatgcaagttccaacaacagcatctttgaccttaaaaaatgacagtatgtgaaggataatatagtcatg |
115 |
Q |
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| T |
45856889 |
gtttccagagatccttgtatcttggggacaaaatgcaagttccaacc---gcgtctttagcgttcagaaaagacagtatgtggaggataatatagtcatg |
45856985 |
T |
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| Q |
116 |
taagtcacttgagtctatctacgttttcactcgcgctgagcattaatctcttcatcggtggtgggatgatgccctcatcagatcaattagacattcaggt |
215 |
Q |
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| T |
45856986 |
taagtcac-tgagtctatcttcgttttcactatcgttgagctttaatctcttcgacgacggtgggttcatgatctcctcagctgaattagacattcagat |
45857084 |
T |
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| Q |
216 |
tataatacctaataatcataaaagcttaaaacaa |
249 |
Q |
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| T |
45857085 |
tataatacataataatcataagaggttaaaacaa |
45857118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 45850873 - 45851009
Alignment:
| Q |
98 |
aaggataatatagtcatgtaagtcacttgagtctatctacgttttcactcgcgctgagcattaatctcttcatcggtggtgggatgatgccctcatcaga |
197 |
Q |
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| T |
45850873 |
aaggataatatagtcatgtaagtcact-gagtctatcttcgttctcacttgt--tgagctttaatctcttcgactgtggtgggttcatgatctcatcagt |
45850969 |
T |
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| Q |
198 |
tcaattagacattcaggttataatacctaataatcataaa |
237 |
Q |
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| T |
45850970 |
ggaattagacattcagattataatacctaataatcataaa |
45851009 |
T |
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