View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17135_high_1 (Length: 655)
Name: NF17135_high_1
Description: NF17135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17135_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 1 - 645
Target Start/End: Original strand, 47798415 - 47799071
Alignment:
| Q |
1 |
taagatggatattgcccctgacatgctcttgagtgcaacttcattcaagtaagaatcggttattcctacc------------gaataatcttctgtcatt |
88 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
47798415 |
taagatggatattgcccctgacatgctcttgagtgcaacttcattcaagtaagaatcggttcttcctaccatatttctgtccgaataatcttctgtcatt |
47798514 |
T |
|
| Q |
89 |
tcaagatatttggccacacatcgaagcatagcgatgctttcaacgcttatttcaaagtttatccagtaacagaactttgctgctagttcaaatgtttctg |
188 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47798515 |
tcaagatatttggccacacatcgaagcatagtgatgctttcaacgcttatttcaaagtttatccagtaacagaactttgctgctagttcaaatgtttctg |
47798614 |
T |
|
| Q |
189 |
atccaccagagacgtcaatgagttcaattaatggaacatcagcaacagcattactagattctgaaatgagcttccttatgtgtccacttttggaaattaa |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47798615 |
atccaccagagacgtcaatgagttcaattaatggaacatcagcaacagcattactagattctgaaatgagcttccttatgtgtccacttttggaaattaa |
47798714 |
T |
|
| Q |
289 |
tggaaactgcaaattacattagagttatgaaaaataattcaataattttgatttccaaattaacaacttttagtactatacatgtatcacctatatcttg |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47798715 |
tggaaactgcaaattacattagagttatgaaaaataattcaataattttgatttccaaattaacaacttttagtactatacatatatcacctatatcttg |
47798814 |
T |
|
| Q |
389 |
cttcttaatctaagtccaattactattctagataaaataaagaataaaacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatc |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47798815 |
cttcttaatctaagtccaattactattctagataaaataaagaataaaacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatc |
47798914 |
T |
|
| Q |
489 |
aacaaaggtggaaataattgattgaaaaaacattaccaaggactagaaatcattactctccatttaatgatattatgattagtaattttgatatttgaat |
588 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47798915 |
aacaaaggtggaaataattgattgaaaaaacattaccaaggactagaaatcattactctccatttaatgatattatgattagtaattttgatatttgaat |
47799014 |
T |
|
| Q |
589 |
ttgttccctaccttgtgtaacgaataggaagcttcaccaatttgtctcatgatgatg |
645 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47799015 |
ttgttccctaccttgtgtaacgaataggaagcttcaccaatttgtctcatgatgatg |
47799071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 39777728 - 39777384
Alignment:
| Q |
1 |
taagatggatattgcccctgacatgctcttgagtgcaacttcattcaagtaagaatcggttattcctacc------------gaataatcttctgtcatt |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |
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| T |
39777728 |
taagatggatattgcccctgacatgctcttgagtgcaacttcattcaagtaagaatcagttcttcctaccaaatttccgaccgaataatcttctgtcatt |
39777629 |
T |
|
| Q |
89 |
tcaagatatttggccacacatcgaagcatagcgatgctttcaacgcttatttcaaagtttatccagtaacagaactttgctgctagttcaaatgtttctg |
188 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
39777628 |
tcaagatactcggctacacatcgaagcatagcgatgttttcgacgcttatttcgaagtttatcccgtaacagaactttgctgctagttcaaatgcttctg |
39777529 |
T |
|
| Q |
189 |
atccaccagagacgtcaatgagttcaattaatggaacatcagcaacagcattactagattctgaaatgagcttccttatgtgtccacttttggaaattaa |
288 |
Q |
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||||||||| ||| || |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
39777528 |
atccaccagggacatcgatgagttcaattaatggaacatcatcaacagcatcactagattctgaaatgagcttccttatgtatccactttttgaaattaa |
39777429 |
T |
|
| Q |
289 |
tggaaactgcaaattacattagagttatgaaaaataattcaataa |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
39777428 |
tggaaactgcaaattacgttagagttatgaaaaataattcaataa |
39777384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 436 - 632
Target Start/End: Complemental strand, 39777284 - 39777099
Alignment:
| Q |
436 |
aacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactaga |
535 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| ||||||||||||| ||||| ||| | ||| ||||||||||||||||| |||||| |||||| |
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| T |
39777284 |
aaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcataaaaaaagcaaagaattgattgaaaaaacagaaccaagtactaga |
39777185 |
T |
|
| Q |
536 |
aatcattactctccatttaatgatattatgattagtaattttgatatttgaatttgttccctaccttgtgtaacgaataggaagcttcaccaatttg |
632 |
Q |
| |
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| ||||||||||||||||| ||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |
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|
| T |
39777184 |
attcattactctccattta-----------gttagtaagtttgatatttgagtttgttgactaccttgtgtaacgaataggaagcttcgccaatttg |
39777099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 5677762 - 5677888
Alignment:
| Q |
71 |
gaataatcttctgtcatttcaagatatttggccacacatcgaagcatagcgatgctttcaacgcttatttcaaagtttatccagtaacagaactttgctg |
170 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| || |||| || || ||||| | ||| ||||| ||||||| |
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|
| T |
5677762 |
gaataatcttctgtcatctcaagatattcggccacacatcgaagcatagcgatgttttccacatttatctcgaaatttataccgtagcagaattttgctg |
5677861 |
T |
|
| Q |
171 |
ctagttcaaatgtttctgatccaccag |
197 |
Q |
| |
|
|||||||||||| ||||| |||||||| |
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| T |
5677862 |
ctagttcaaatgcttctgctccaccag |
5677888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 39812184 - 39812147
Alignment:
| Q |
452 |
caactacatagatcaaaccacatcataatgttctatca |
489 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
39812184 |
caactacatggatcaaacgacatcataatgttctatca |
39812147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 445 - 489
Target Start/End: Original strand, 7513019 - 7513063
Alignment:
| Q |
445 |
gtggagtcaactacatagatcaaaccacatcataatgttctatca |
489 |
Q |
| |
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|||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
7513019 |
gtggggtcaactacatagatcaaattacgtcataatgttctatca |
7513063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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