View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17135_high_10 (Length: 286)
Name: NF17135_high_10
Description: NF17135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17135_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 8291472 - 8291217
Alignment:
| Q |
18 |
aagtctagcccgcattggtatacaaagttaaaaaggttaatcacccatccataataatgatttttaaaaaagaaattttgtccaattaccactattgttg |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8291472 |
aagtctagcccgcattggtatacaa-gttaaaaaggttaatcacccatccataataatgatttttaaaaaagaaattttgtccaattaccactattgttg |
8291374 |
T |
|
| Q |
118 |
ctgctgtttgagtttgtagcagaatttaactcagcaaactgtgcaaatccaattaagaatgtgagatagagccctgccagcagttgagaacctccagagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8291373 |
ctgctgtttgagtttgtagcagaatttaactcagcaaactgtgcaaatccaattaagaatgtgagagagagccctgccagcagttgagaacctccagagc |
8291274 |
T |
|
| Q |
218 |
aattcaaatataaagtcaacattgatgcgggatgtttcttaaatgacagcacaggtt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8291273 |
aattcaaatataaagtcaacattgatgcgggatgtttcttaaatgacagcacaggtt |
8291217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 33634185 - 33634062
Alignment:
| Q |
136 |
gcagaatttaactcagcaaactgtgcaaatccaattaagaatgtgagatagagccctgccagcagttgagaacctccagagcaattcaaatataaagtca |
235 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||| ||||||| |||||||||| | |||| |||||||| ||| ||||||| |||||| |
|
|
| T |
33634185 |
gcagattttaactctgcaaactgtgcaaatccaatccagactgtgagagagagccctgc---cggttgggaacctccggagaaattcaatactaaagttt |
33634089 |
T |
|
| Q |
236 |
acattgatgcgggatgtttcttaaatg |
262 |
Q |
| |
|
||||||||||||| || |||| ||||| |
|
|
| T |
33634088 |
acattgatgcgggttgcttctcaaatg |
33634062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University