View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17135_high_14 (Length: 271)
Name: NF17135_high_14
Description: NF17135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17135_high_14 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] scaffold0131 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 32091794 - 32092045
Alignment:
| Q |
19 |
cataggtcatccttctgagcttatttgctttcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32091794 |
cataggtcatccttctgagcttatttgctttcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaa |
32091893 |
T |
|
| Q |
119 |
gaaaagctttctacattgtttctagtgaaagcaagtaataaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32091894 |
gaaaagctttctacattgtttctagtgaaagcaagttataaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattag |
32091993 |
T |
|
| Q |
219 |
attcctatcttttaatctttgttctttctaatggaacacaaactataggact |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32091994 |
attcctatcttttaatctttgttctttctaatggaacacaaactataggact |
32092045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 271
Target Start/End: Complemental strand, 12287388 - 12287139
Alignment:
| Q |
21 |
taggtcatccttctgagcttatttgctttcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaaga |
120 |
Q |
| |
|
||||| |||||||| | | |||||||||| |||||||||||||| || |||||||||| || ||||||| |||||| ||||||||||||||| | ||||| |
|
|
| T |
12287388 |
taggttatccttcttatcatatttgctttgaatatttgctaaaatttcattctaataattgtggttattatttcaggttggggaaaacaagtaataaaga |
12287289 |
T |
|
| Q |
121 |
aaagctttctacattgtttctagtgaaagcaagtaataaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattagat |
220 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| | | |||| |||| ||||||||||||||| ||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
12287288 |
aaagctttctacattgtctctggtgaaagcaaatca-aaaataaaatcttaatacattgcaaattggaaccaaaggtaggttctcttttgtgaattagat |
12287190 |
T |
|
| Q |
221 |
tcctatcttttaatctttgttctttctaatggaacacaaactataggactg |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12287189 |
tcctatcttttaatctttgttctttctaatggaacacaaactacaggactg |
12287139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 18987464 - 18987397
Alignment:
| Q |
201 |
ttttgttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactatagga |
268 |
Q |
| |
|
|||| ||||||||||| ||| ||| |||| ||||||||||||| || ||| ||| ||||||||||||| |
|
|
| T |
18987464 |
ttttattttgtgaattggatccctgtcttctaatctttgttctctccaatcgaatacaaactatagga |
18987397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 40 - 263
Target Start/End: Original strand, 2269036 - 2269258
Alignment:
| Q |
40 |
tatttgctttcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaagaaaagctttctacattgttt |
139 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||| ||| |||||| |||||| ||||||||||||||| | ||||||||||||||| ||| || | |
|
|
| T |
2269036 |
tatttgcttttaatatttgctaaaaattcattctaataattgcagttattatttcaggttggggaaaacaagtaataaagaaaagctttcttcatggtct |
2269135 |
T |
|
| Q |
140 |
ctagtgaaagcaagtaataaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattagattcctatcttttaatctttg |
239 |
Q |
| |
|
|| |||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2269136 |
ctggtgaaagcaagtaa-aaaagaaaatcttaatacattgcaaattggaaccaaaggtaggttctgttttgtgaattatattcctatcttttaatctttg |
2269234 |
T |
|
| Q |
240 |
ttctttctaatggaacacaaacta |
263 |
Q |
| |
|
||||||| |||| ||||||||||| |
|
|
| T |
2269235 |
ttctttccaatgaaacacaaacta |
2269258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 4487278 - 4487215
Alignment:
| Q |
206 |
ttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactataggactg |
271 |
Q |
| |
|
||||||||||||||||| | |||| | || ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
4487278 |
ttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggactg |
4487215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 9392157 - 9391916
Alignment:
| Q |
19 |
cataggtcatccttctgagcttatttgctttcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaa |
118 |
Q |
| |
|
|||||||||||||||| | | |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||| ||| |
|
|
| T |
9392157 |
cataggtcatccttcttatcatatttgcttttaatatttgctaaaaattcattctaataactgcggttattatttcaggttgggaaaaacaagtactaaa |
9392058 |
T |
|
| Q |
119 |
gaaaagctttctacattgtttctagtgaaagcaagtaataaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattag |
218 |
Q |
| |
|
||||| |||||||| |||| ||||| |||| |||||| ||||||||| | ||||||||||||| || |||||||| ||||||| ||||||||||||||| |
|
|
| T |
9392057 |
gaaaatctttctacgttgt--ctagtaaaagaaagtaa-aaaagaaaatcataatacattgcaaatttgaaccaaaggtaggttctgttttgtgaattag |
9391961 |
T |
|
| Q |
219 |
attcctatcttttaatctttgttctttctaatggaacacaaacta |
263 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9391960 |
attcctattttttaatttttgttctttctaatggaacacaaacta |
9391916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 19022757 - 19022645
Alignment:
| Q |
158 |
aaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattagattcctatcttttaatctttgttctttctaatggaacac |
257 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||||||||||| | |||| | || ||| ||||||| |||||||||| |
|
|
| T |
19022757 |
aaaagaaaagcttagtacattgcaacttggaaccaaaggtaggttctgttttgtgaattagattcttgtcttatcat-ttttttctttcgaatggaacac |
19022659 |
T |
|
| Q |
258 |
aaactataggactg |
271 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
19022658 |
aaactagaggactg |
19022645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 158 - 271
Target Start/End: Complemental strand, 22066633 - 22066522
Alignment:
| Q |
158 |
aaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattagattcctatcttttaatctttgttctttctaatggaacac |
257 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||||||||||| | |||| | | ||| ||||||| |||||||||| |
|
|
| T |
22066633 |
aaaagaaaagcttagtacattgcaacttggaaccaaaggtaggttctgttttgtgaattagattcttgtcttatca--ttttttctttcgaatggaacac |
22066536 |
T |
|
| Q |
258 |
aaactataggactg |
271 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
22066535 |
aaactagaggactg |
22066522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 23918059 - 23918126
Alignment:
| Q |
201 |
ttttgttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactatagga |
268 |
Q |
| |
|
|||| ||||||||||| ||| ||| |||| ||||||||||||| || ||| ||| ||||||||||||| |
|
|
| T |
23918059 |
ttttattttgtgaattggatccctgtcttctaatctttgttctctccaatcgaatacaaactatagga |
23918126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 13471 - 13582
Alignment:
| Q |
158 |
aaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattagattcctatcttttaatc-tttgttctttctaatggaaca |
256 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||| ||||||| ||||||||||| ||||||||| |||| ||| ||| |||||| ||||||||| |
|
|
| T |
13471 |
aaaagaaaagcttactatattgcaacttggaaccaaaggtaggttctgttttgtgaaatagattcctgtctt---atctttttttcttttgaatggaaca |
13567 |
T |
|
| Q |
257 |
caaactataggactg |
271 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
13568 |
caaactagaggactg |
13582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 13405 - 13492
Alignment:
| Q |
49 |
tcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaagaaaagctttctacattg |
136 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| || ||| |||||| ||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
13405 |
tcaatatttgctaaaaattcatactaataactgcagtcattatttcaggttggggaaaacaagtccaaaagaaaagcttactatattg |
13492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 3882043 - 3882105
Alignment:
| Q |
209 |
tgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactataggactg |
271 |
Q |
| |
|
|||||||| ||||||| |||| ||||||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
3882043 |
tgtgaattggattcctgtcttctaatctttgttctctccaatggaatacaaactataggactg |
3882105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 30342301 - 30342368
Alignment:
| Q |
201 |
ttttgttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactatagga |
268 |
Q |
| |
|
|||| ||||||||||| ||| | | |||| ||||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
30342301 |
ttttattttgtgaattggatccatgtcttctaatctttgttctctccaatggaaaacaaactatagga |
30342368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University