View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17135_high_18 (Length: 230)

Name: NF17135_high_18
Description: NF17135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17135_high_18
NF17135_high_18
[»] chr6 (36 HSPs)
chr6 (5-230)||(3409462-3409687)
chr6 (1-230)||(2377929-2378157)
chr6 (1-220)||(10074118-10074336)
chr6 (1-95)||(29518857-29518951)
chr6 (125-230)||(29518678-29518784)
chr6 (144-228)||(2579387-2579473)
chr6 (144-230)||(16107855-16107943)
chr6 (5-95)||(16107998-16108090)
chr6 (133-230)||(26544224-26544321)
chr6 (144-228)||(2578730-2578816)
chr6 (1-64)||(2579232-2579297)
chr6 (7-64)||(2578575-2578634)
chr6 (1-65)||(10074490-10074553)
chr6 (25-65)||(35210456-35210496)
chr6 (2-61)||(2579620-2579678)
chr6 (179-230)||(2579805-2579856)
chr6 (1-40)||(26544041-26544080)
chr6 (1-40)||(29518495-29518534)
chr6 (1-40)||(32741171-32741210)
chr6 (4-95)||(33605913-33606003)
chr6 (179-230)||(2579042-2579093)
chr6 (1-40)||(3058218-3058257)
chr6 (5-40)||(3409251-3409286)
chr6 (2-65)||(10073742-10073804)
chr6 (1-40)||(14748465-14748504)
chr6 (183-230)||(16454750-16454797)
chr6 (1-40)||(35210196-35210235)
chr6 (11-65)||(8481893-8481948)
chr6 (1-57)||(2578961-2579016)
chr6 (5-41)||(3415449-3415485)
chr6 (166-230)||(35210378-35210442)
chr6 (1-32)||(2579999-2580030)
chr6 (6-65)||(6071098-6071158)
chr6 (3-40)||(1127352-1127389)
chr6 (1-29)||(1950312-1950340)
chr6 (174-230)||(10073918-10073974)
[»] chr8 (33 HSPs)
chr8 (1-228)||(1013998-1014225)
chr8 (1-230)||(3669862-3670091)
chr8 (1-230)||(9309156-9309386)
chr8 (1-81)||(18372383-18372463)
chr8 (1-77)||(18372498-18372574)
chr8 (1-64)||(6731872-6731935)
chr8 (1-98)||(45121783-45121881)
chr8 (1-81)||(18372826-18372905)
chr8 (5-65)||(147794-147856)
chr8 (1-64)||(45122972-45123037)
chr8 (143-230)||(147626-147715)
chr8 (5-64)||(8918895-8918956)
chr8 (1-81)||(18373058-18373139)
chr8 (1-81)||(18371783-18371863)
chr8 (5-65)||(40518550-40518609)
chr8 (5-81)||(30359558-30359636)
chr8 (3-42)||(30441071-30441110)
chr8 (6-81)||(43274699-43274776)
chr8 (5-41)||(3669678-3669714)
chr8 (174-230)||(34835050-34835105)
chr8 (8-65)||(34835439-34835498)
chr8 (8-65)||(34835705-34835764)
chr8 (1-61)||(6651476-6651534)
chr8 (1-32)||(41972158-41972189)
chr8 (143-226)||(9608932-9609017)
chr8 (1-30)||(3038417-3038446)
chr8 (1-30)||(25561943-25561972)
chr8 (174-230)||(30359448-30359501)
chr8 (1-29)||(147454-147482)
chr8 (12-40)||(1014383-1014411)
chr8 (5-54)||(34835185-34835236)
chr8 (1-40)||(41416298-41416335)
chr8 (4-32)||(45122040-45122068)
[»] chr3 (36 HSPs)
chr3 (1-230)||(22304370-22304600)
chr3 (1-172)||(4823515-4823686)
chr3 (53-227)||(22303759-22303934)
chr3 (1-135)||(11661846-11661982)
chr3 (4-124)||(15773099-15773220)
chr3 (17-227)||(41359904-41360116)
chr3 (1-65)||(22304213-22304277)
chr3 (1-119)||(37990766-37990884)
chr3 (4-65)||(32462689-32462752)
chr3 (155-230)||(53577540-53577616)
chr3 (1-64)||(9240118-9240180)
chr3 (1-64)||(54017943-54018008)
chr3 (1-81)||(29644708-29644791)
chr3 (1-64)||(21832470-21832532)
chr3 (1-65)||(42342217-42342283)
chr3 (1-40)||(50612579-50612618)
chr3 (143-230)||(15773029-15773117)
chr3 (5-65)||(22304079-22304141)
chr3 (1-40)||(37726496-37726535)
chr3 (1-40)||(39389062-39389101)
chr3 (144-227)||(54018093-54018178)
chr3 (173-230)||(53577659-53577716)
chr3 (4-40)||(51886553-51886589)
chr3 (1-32)||(1634442-1634473)
chr3 (1-32)||(8327904-8327935)
chr3 (1-32)||(12747879-12747910)
chr3 (1-32)||(25739552-25739583)
chr3 (1-32)||(39336356-39336387)
chr3 (179-229)||(33803184-33803234)
chr3 (8-70)||(2299937-2300000)
chr3 (6-43)||(3384398-3384435)
chr3 (1-30)||(11661537-11661566)
chr3 (1-30)||(32463028-32463057)
chr3 (1-30)||(35946524-35946553)
chr3 (1-30)||(45901715-45901744)
chr3 (1-30)||(52634678-52634707)
[»] chr1 (41 HSPs)
chr1 (1-230)||(50051778-50052007)
chr1 (1-230)||(44290585-44290806)
chr1 (1-229)||(48588615-48588843)
chr1 (1-224)||(3537274-3537496)
chr1 (3-230)||(26661651-26661881)
chr1 (101-229)||(48588340-48588468)
chr1 (1-70)||(37556071-37556142)
chr1 (5-95)||(41157311-41157402)
chr1 (1-64)||(22077249-22077311)
chr1 (1-63)||(22077622-22077683)
chr1 (1-64)||(34364891-34364956)
chr1 (140-230)||(34364682-34364774)
chr1 (1-42)||(44290952-44290993)
chr1 (3-59)||(11977251-11977309)
chr1 (128-224)||(11977128-11977224)
chr1 (1-81)||(47379912-47379990)
chr1 (174-230)||(66399-66455)
chr1 (1-65)||(30630765-30630828)
chr1 (179-230)||(31767094-31767144)
chr1 (1-40)||(41759475-41759514)
chr1 (143-230)||(34649614-34649702)
chr1 (185-230)||(9956084-9956129)
chr1 (144-230)||(37555903-37555990)
chr1 (1-41)||(45494105-45494146)
chr1 (1-64)||(66215-66278)
chr1 (174-230)||(22077422-22077478)
chr1 (5-40)||(3550712-3550747)
chr1 (1-32)||(41142372-41142403)
chr1 (1-40)||(50052150-50052189)
chr1 (196-230)||(30630586-30630620)
chr1 (10-40)||(32168823-32168853)
chr1 (1-30)||(17294579-17294608)
chr1 (5-38)||(32594847-32594880)
chr1 (1-30)||(34649440-34649469)
chr1 (4-41)||(44043908-44043944)
chr1 (5-50)||(50469212-50469256)
chr1 (47-138)||(3537495-3537587)
chr1 (194-230)||(22077776-22077812)
chr1 (13-65)||(24448245-24448296)
chr1 (4-32)||(37850730-37850758)
chr1 (47-95)||(41184198-41184246)
[»] scaffold0078 (1 HSPs)
scaffold0078 (1-230)||(5158-5388)
[»] chr2 (36 HSPs)
chr2 (4-229)||(5542755-5542980)
chr2 (4-230)||(14745424-14745649)
chr2 (1-230)||(29676703-29676934)
chr2 (1-104)||(36178396-36178498)
chr2 (1-64)||(37106156-37106219)
chr2 (1-65)||(28531441-28531504)
chr2 (5-64)||(7598577-7598636)
chr2 (1-64)||(38796345-38796410)
chr2 (1-95)||(36785690-36785786)
chr2 (1-112)||(3673003-3673116)
chr2 (1-64)||(40679756-40679818)
chr2 (155-230)||(36178513-36178589)
chr2 (182-230)||(37106099-37106147)
chr2 (4-65)||(40733848-40733911)
chr2 (1-52)||(31468873-31468926)
chr2 (5-42)||(5543129-5543166)
chr2 (1-41)||(36178732-36178772)
chr2 (1-40)||(14745794-14745833)
chr2 (1-40)||(41283602-41283641)
chr2 (15-65)||(41678510-41678559)
chr2 (143-230)||(7598403-7598491)
chr2 (4-36)||(37105920-37105952)
chr2 (1-32)||(962598-962629)
chr2 (1-40)||(1769884-1769923)
chr2 (9-65)||(30323430-30323487)
chr2 (1-32)||(35580850-35580881)
chr2 (5-65)||(40733482-40733544)
chr2 (13-64)||(42514981-42515031)
chr2 (1-60)||(15880233-15880294)
chr2 (6-64)||(37894824-37894881)
chr2 (143-226)||(40734063-40734147)
chr2 (10-65)||(40734243-40734300)
chr2 (1-30)||(6421387-6421416)
chr2 (5-65)||(33561582-33561641)
chr2 (194-222)||(35580671-35580699)
chr2 (194-230)||(36785893-36785928)
[»] chr7 (27 HSPs)
chr7 (5-219)||(14681323-14681537)
chr7 (1-230)||(37533137-37533347)
chr7 (1-230)||(22566789-22567021)
chr7 (1-119)||(7553937-7554056)
chr7 (134-230)||(37532897-37532994)
chr7 (35-110)||(37532822-37532896)
chr7 (1-64)||(30244667-30244732)
chr7 (1-61)||(30255308-30255370)
chr7 (1-64)||(30244236-30244301)
chr7 (1-64)||(30245043-30245108)
chr7 (124-172)||(45697753-45697801)
chr7 (5-61)||(30245463-30245521)
chr7 (5-64)||(40094525-40094583)
chr7 (15-81)||(37345868-37345933)
chr7 (1-38)||(14681281-14681318)
chr7 (1-38)||(29157559-29157596)
chr7 (145-227)||(40094664-40094747)
chr7 (174-230)||(1085543-1085599)
chr7 (1-32)||(1085743-1085774)
chr7 (1-32)||(7517580-7517611)
chr7 (143-229)||(28300473-28300559)
chr7 (1-32)||(36622960-36622991)
chr7 (140-220)||(45433424-45433505)
chr7 (1-119)||(45434548-45434667)
chr7 (194-230)||(8128387-8128423)
chr7 (1-29)||(41910721-41910749)
chr7 (144-205)||(48243356-48243419)
[»] scaffold0702 (1 HSPs)
scaffold0702 (1-230)||(269-497)
[»] chr5 (41 HSPs)
chr5 (1-230)||(6500626-6500853)
chr5 (86-221)||(9498496-9498629)
chr5 (1-124)||(3295142-3295266)
chr5 (6-95)||(624134-624222)
chr5 (137-222)||(32487576-32487661)
chr5 (1-65)||(26074909-26074975)
chr5 (5-65)||(24489335-24489394)
chr5 (1-59)||(26074273-26074330)
chr5 (5-65)||(36522027-36522086)
chr5 (1-40)||(5723918-5723957)
chr5 (1-40)||(32487386-32487425)
chr5 (1-64)||(13415887-13415951)
chr5 (148-229)||(26075058-26075140)
chr5 (1-40)||(623810-623849)
chr5 (1-60)||(13785736-13785794)
chr5 (1-65)||(26074577-26074643)
chr5 (1-40)||(27502163-27502202)
chr5 (1-65)||(31509589-31509654)
chr5 (1-35)||(36492344-36492378)
chr5 (93-146)||(795196-795249)
chr5 (1-40)||(6500443-6500481)
chr5 (1-32)||(12662779-12662810)
chr5 (20-64)||(15370380-15370426)
chr5 (1-32)||(35150007-35150038)
chr5 (1-32)||(36568694-36568725)
chr5 (194-229)||(38427396-38427431)
chr5 (1-32)||(40296442-40296473)
chr5 (1-31)||(299490-299520)
chr5 (143-230)||(13416036-13416124)
chr5 (143-230)||(26074403-26074492)
chr5 (1-39)||(41170627-41170665)
chr5 (1-30)||(1028644-1028673)
chr5 (174-230)||(299666-299721)
chr5 (4-40)||(5660290-5660326)
chr5 (5-41)||(9498785-9498821)
chr5 (4-32)||(15370099-15370127)
chr5 (174-230)||(25328111-25328167)
chr5 (4-32)||(35150747-35150775)
chr5 (4-32)||(35151038-35151066)
chr5 (1-65)||(36522364-36522427)
chr5 (36-64)||(38427525-38427553)
[»] chr4 (36 HSPs)
chr4 (3-219)||(18932887-18933102)
chr4 (100-230)||(41370532-41370662)
chr4 (89-230)||(10246095-10246237)
chr4 (130-230)||(3340982-3341083)
chr4 (1-95)||(44620595-44620691)
chr4 (154-230)||(45496726-45496803)
chr4 (1-75)||(3341083-3341159)
chr4 (1-95)||(44621361-44621457)
chr4 (1-65)||(36629205-36629268)
chr4 (144-228)||(2740868-2740953)
chr4 (1-69)||(49076573-49076643)
chr4 (5-119)||(2740984-2741098)
chr4 (143-229)||(20826013-20826101)
chr4 (36-95)||(16889315-16889375)
chr4 (1-62)||(52884856-52884918)
chr4 (1-61)||(41370673-41370732)
chr4 (140-229)||(44621175-44621266)
chr4 (1-64)||(3244576-3244638)
chr4 (1-40)||(41370349-41370388)
chr4 (1-40)||(50788108-50788147)
chr4 (1-40)||(55933249-55933288)
chr4 (6-40)||(49880152-49880186)
chr4 (1-63)||(22028086-22028150)
chr4 (5-95)||(39404334-39404425)
chr4 (1-42)||(50630880-50630921)
chr4 (140-229)||(23817569-23817659)
chr4 (1-32)||(2740700-2740731)
chr4 (9-40)||(18933103-18933134)
chr4 (1-64)||(45489456-45489522)
chr4 (1-32)||(52884695-52884726)
chr4 (1-31)||(16888941-16888971)
chr4 (1-35)||(50002423-50002457)
chr4 (1-30)||(34646774-34646803)
chr4 (1-30)||(41707589-41707618)
chr4 (194-230)||(19895470-19895506)
chr4 (1-60)||(54108888-54108944)
[»] scaffold0734 (1 HSPs)
scaffold0734 (1-119)||(5689-5808)
[»] scaffold0391 (4 HSPs)
scaffold0391 (1-65)||(3112-3178)
scaffold0391 (140-223)||(1380-1465)
scaffold0391 (1-64)||(1233-1298)
scaffold0391 (160-230)||(1595-1666)
[»] scaffold0171 (1 HSPs)
scaffold0171 (5-64)||(17587-17648)
[»] scaffold0113 (2 HSPs)
scaffold0113 (1-65)||(39805-39869)
scaffold0113 (194-230)||(39629-39665)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 3409687 - 3409462
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagcttttgacttt 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3409687 gatgtggtacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagccgaagcttttgacttt 3409588  T
Q  105 gcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttcgtcga 204  Q
    |||||||| ||| | ||||||||||||||||||||||||||||||||| ||||| ||||| | ||||| |||| ||||||||||||     |||||||||    
T  3409587 gcctgtattgccatccctgcacaaggagccacttgctacttgtaccgccgttgctgctttttacgcaacgaccggctgcctcggtcatatacttcgtcga 3409488  T
Q  205 accggggctctgataccactgttggg 230  Q
    |||||||||||||||||||| |||||    
T  3409487 accggggctctgataccactattggg 3409462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2378157 - 2377929
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc-ttagagcggaagcttttg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||   || | | |||||||| ||  |||||||||| ||     
T  2378157 atccgatgtgggacatataactcacacttgcaaaccaacactccccc-caaatgtgagtccatttattcatcatgctcccccttcaagcggaagctctt- 2378060  T
Q  100 actttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttc 199  Q
    | ||| ||||||||   ||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||| ||||  || ||||||| || ||||||    
T  2378059 agtttacctgtatcattgttcctgcacaaggagccacttgctgcttgtactgctgttgcgactttcttcgcaacgaccgactacctcggttgcacccttc 2377960  T
Q  200 gtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||||||||||||||||||||    
T  2377959 gtcgaaccggggctctgataccactgttggg 2377929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10074118 - 10074336
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc-ttagagcggaagcttttg 99  Q
    ||||||||||||| ||||||||||| |||||| || |||||||||||||||||| ||||| |||| || | | |||||||| ||  |||||||||| ||     
T  10074118 atccgatgtgggatatataactcacccttgcacac-aacactccccctcaagtgcgagtctatcaattcatcatgctcccccttcaagcggaagctctt- 10074215  T
Q  100 actttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaa-tgaccagctgcctcggtcgctccctt 198  Q
    |||| || ||||||||||||  ||||||| |||||||||||| |||||||||  |||||  |||||||||||| ||||| || ||||||||||  |||||    
T  10074216 actt-gcttgtatcgccgttgttgcacaatgagccacttgctgcttgtaccgtcgttgctactttctgcgcaactgaccggcggcctcggtcgtaccctt 10074314  T
Q  199 cgtcgaaccggggctctgatac 220  Q
    | ||||||||||||||||||||    
T  10074315 cttcgaaccggggctctgatac 10074336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 29518951 - 29518857
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagct 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |  ||||||||||    
T  29518951 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcaattcatcgtgctccccctcaagcggaagct 29518857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 29518784 - 29518678
Alignment:
Q  125 acaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaa-tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccac 223  Q
    ||||||||||||||||| |||||||||  ||||| ||||||||||||| | ||| || | ||||||||| ||||||||||||||||||||||||||||||    
T  29518784 acaaggagccacttgctgcttgtaccgtcgttgctgctttctgcgcaactaaccggcggtctcggtcgcacccttcgtcgaaccggggctctgataccac 29518685  T
Q  224 tgttggg 230  Q
    |||||||    
T  29518684 tgttggg 29518678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 2579387 - 2579473
Alignment:
Q  144 ttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttg 228  Q
    ||||||||| ||||| |||||||||||||   |||| |||||||||||||  || ||||||||||||||||||||||||||||||||    
T  2579387 ttgtaccgccgttgctgctttctgcgcaagtggaccggctgcctcggtcgtaccgttcgtcgaaccggggctctgataccactgttg 2579473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 16107943 - 16107855
Alignment:
Q  144 ttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    ||||||||| ||||| ||||||||| |||   |||| ||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  16107943 ttgtaccgccgttgctgctttctgcacaaatggaccggctgcctcggtcatacccttcgtcgaaccggggctctgataccactgttggg 16107855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 16108090 - 16107998
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagct 95  Q
    ||||||| |||||||||||||||||| | ||  |||||||||||||||||||||||||||||| || | | ||||||||||  ||||||||||    
T  16108090 gatgtggaacatataactcacacttgtacacaacaacactccccctcaagtgtgagtccatcaattcatcatgctccccttcaagcggaagct 16107998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 26544321 - 26544224
Alignment:
Q  133 ccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||  |||||||   ||||||||||||| |||||  ||| |||||||||||||| |||||| ||||||||||||||| |||||| |||||||    
T  26544321 ccacttgctgtttgtaccagcgttgcggctttctacgcaaataccggctgcctcggtcgcacccttcatcgaaccggggctctaataccagtgttggg 26544224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 2578730 - 2578816
Alignment:
Q  144 ttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttg 228  Q
    ||||| ||| ||||| ||||||||| |||   |||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  2578730 ttgtaacgccgttgctgctttctgcccaagcggaccggctgcctcggtcgtacccttcgtcgaaccggggctctgataccactgttg 2578816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 2579232 - 2579297
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatc 64  Q
    |||||||||||||||||||||| ||||||| | ||  |||||||||||||||||||||||||||||    
T  2579232 atccgatgtgggacatataactaacacttgtacacaacaacactccccctcaagtgtgagtccatc 2579297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 2578575 - 2578634
Alignment:
Q  7 tgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatc 64  Q
    |||||||||||||||||||||||| | ||  |||||||||||||||||||||||||||||    
T  2578575 tgtgggacatataactcacacttgtacacaacaacactccccctcaagtgtgagtccatc 2578634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10074490 - 10074553
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||| | ||||||||||||||| || |||||||||||| ||||||||||||||||    
T  10074490 atccgatgtgggacctctaactcacacttgcacac-aacactcccccttaagtgtgagtccatca 10074553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 35210496 - 35210456
Alignment:
Q  25 cacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35210496 cacttgcaaaccaacactccccctcaagtgtgagtccatca 35210456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 2579620 - 2579678
Alignment:
Q  2 tccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtcc 61  Q
    |||||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||    
T  2579620 tccgatgtgggacatataactcacacctgctaa-caacactctccctcaagtgtgagtcc 2579678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 2579805 - 2579856
Alignment:
Q  179 gctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  2579805 gctgcctcggtcgtacccttcgtggaaccggggctctgataccactgttggg 2579856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26544080 - 26544041
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26544080 atccgatgtgggacatataactcacacttgcaaaccaaca 26544041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29518534 - 29518495
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29518534 atccgatgtgggacatataactcacacttgcaaaccaaca 29518495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32741210 - 32741171
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32741210 atccgatgtgggacatataactcacacttgcaaaccaaca 32741171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 33606003 - 33605913
Alignment:
Q  4 cgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagct 95  Q
    ||||||||||||||||||| ||| ||||| || | ||||||||||||||||||||||||||| || | ||||| |  ||| |||||||||||    
T  33606003 cgatgtgggacatataacttacatttgcacac-atcactccccctcaagtgtgagtccatcaattcaccgtgcccttcttcgagcggaagct 33605913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 2579042 - 2579093
Alignment:
Q  179 gctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||  ||||||||||||||||| |||||||| ||||||||||    
T  2579042 gctgcctcggtcgtacccttcgtcgaaccgggactctgatatcactgttggg 2579093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3058257 - 3058218
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  3058257 atccgatgtgggacatataactaacacttgcaaaccaaca 3058218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 3409286 - 3409251
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  3409286 gatgtgggacatataactcacacttgcaaaccaaca 3409251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 10073742 - 10073804
Alignment:
Q  2 tccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    ||||||||||||||||||||| ||||||||| | |||||| ||| || ||||||||||||||||    
T  10073742 tccgatgtgggacatataactaacacttgcaca-caacaccccctcttaagtgtgagtccatca 10073804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14748465 - 14748504
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  14748465 atccgatgtgggacatataactcacacttgcaaatcaaca 14748504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 16454797 - 16454750
Alignment:
Q  183 cctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||  |||||||||||||| ||||||||||||||||||||||    
T  16454797 cctcggtcgtacccttcgtcgaacctgggctctgataccactgttggg 16454750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35210235 - 35210196
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  35210235 atccgatgtgagacatataactcacacttgcaaaccaaca 35210196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 8481948 - 8481893
Alignment:
Q  11 ggacatataactcacacttgcaaaccaaca--ctccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||||||| || ||||  |||||||||||||||||||||||||    
T  8481948 ggacatataactcacacttgcacac-aacaatctccccctcaagtgtgagtccatca 8481893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2578961 - 2579016
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtga 57  Q
    |||||||| ||||||||||| ||||||||||  | ||||||||||||||||||||||    
T  2578961 atccgatgagggacatataaatcacacttgctca-caacactccccctcaagtgtga 2579016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 3415485 - 3415449
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacac 41  Q
    |||||||||||||||||||||||| ||||||||||||    
T  3415485 gatgtgggacatataactcacactcgcaaaccaacac 3415449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 35210442 - 35210378
Alignment:
Q  166 tgcgcaatgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    ||||||| |||| ||| | |||||||  ||||||||||||||| |||| ||||||||||||||||    
T  35210442 tgcgcaacgaccggctacttcggtcgtacccttcgtcgaaccgaggctttgataccactgttggg 35210378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 2579999 - 2580030
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  2579999 atccgatgtgggacatataactcacacttgca 2580030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 6071158 - 6071098
Alignment:
Q  6 atgtgggacatataactcacacttgcaaaccaaca--ctccccctcaagtgtgagtccatca 65  Q
    ||||||||||||||||||||||||||| | |||||  || |||||||| |||||||||||||    
T  6071158 atgtgggacatataactcacacttgcaca-caacaatcttcccctcaaatgtgagtccatca 6071098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 1127389 - 1127352
Alignment:
Q  3 ccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  1127389 ccgatgtgggatatataactcacagttgcaaaccaaca 1127352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 1950312 - 1950340
Alignment:
Q  1 atccgatgtgggacatataactcacactt 29  Q
    |||||||||||||||||||||||||||||    
T  1950312 atccgatgtgggacatataactcacactt 1950340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 10073918 - 10073974
Alignment:
Q  174 gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| |||||||||||||  || ||||| ||||||||| |||||||||| |||||||    
T  10073918 gaccggctgcctcggtcgtacctttcgttgaaccggggatctgataccattgttggg 10073974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 1013998 - 1014225
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc-ttagagcggaagcttttg 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | | |||||| ||  |||||||||| ||     
T  1013998 atccgatgtggaacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcaattcatcatactcccccttcaagcggaagctctt- 1014096  T
Q  100 actttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttc 199  Q
    ||||||| ||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||| ||||  ||||||    
T  1014097 actttgcatgtatcgtcgttcctgcacaaggagccacttgctgcttgtaccgccgttgcggctttctgcgcaacgaccggctgcctcagtcgtacccttc 1014196  T
Q  200 gtcgaaccggggctctgataccactgttg 228  Q
    |||||||||||||||||||||||||||||    
T  1014197 gtcgaaccggggctctgataccactgttg 1014225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3670091 - 3669862
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctc-cccttagagcggaagcttttg 99  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | | ||||| |||||  ||| |||||| ||     
T  3670091 atccgatgtgggacatataactcacacttgcaaaccaacagtccccctcaagtgtgagtccatcaattcatcatgctcacccttcaagcagaagctctt- 3669993  T
Q  100 actttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttc 199  Q
    ||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||| ||||||||| |||  ||||||    
T  3669992 actttgcatgtatcgccgttcctgcacaaggagccacttgttgcttgtaccgttgttgcggctttctgcgcaacgaccggctgcctcgatcgtacccttc 3669893  T
Q  200 gtcgaaccggggctctgataccactgttggg 230  Q
     | |||  |||||||||||||||| ||||||    
T  3669892 attgaaggggggctctgataccaccgttggg 3669862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 9309386 - 9309156
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagctttt 98  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||| |||||||||||||||||| ||||||||||    | | |||| ||||    
T  9309386 atccgatgtgggacatataactcacacttgcacacaacaacactccccctcaattgtgagtccatcactttatcgtgctcccc--ccaacagaagttttt 9309289  T
Q  99 gactttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaa-tgaccagctgcctcggtcgctccct 197  Q
     ||||    |||||| | ||| ||||||||||||||||||||| ||||| |||  ||||  ||||||| ||||| ||||| || ||||||||||  ||||    
T  9309288 tacttgctttgtatcactgttgctgcacaaggagccacttgctgcttgtgccgtcgttgttgctttctacgcaactgaccggcggcctcggtcgtaccct 9309189  T
Q  198 tcgtcgaaccggggctctgataccactgttggg 230  Q
     |||||||| |||| |||||||||||| |||||    
T  9309188 ccgtcgaactggggttctgataccacttttggg 9309156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 18372383 - 18372463
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc 81  Q
    |||||||||| |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||    
T  18372383 atccgatgtgagacatataactcacactttcacaacaacactccccctcaagtgtgagtccatcactttatcgtgctcccc 18372463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 18372498 - 18372574
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgct 77  Q
    ||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||    
T  18372498 atccgatgtgggacatataactcacactttcacaacaacactccccctcaagtgtgagtccatcactttatcgtgct 18372574  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6731935 - 6731872
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 64  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  6731935 atccgatgtgggacatataactcacacttgcaaaacaacactccccctcaaatgtgagtccatc 6731872  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 45121783 - 45121881
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagctttt 98  Q
    ||||||||||||||| | |||||||||||| | ||  ||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  45121783 atccgatgtgggaca-acaactcacacttgtacacaacaacactcccccttaagtgtgagtccatcactttatcgtgctccccccagagcggaagctttt 45121881  T

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Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 18372826 - 18372905
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc 81  Q
    |||||||||| |||||||||||||||||| || | |||||||| || ||||||||||||||||||||||| ||||||||||    
T  18372826 atccgatgtgtgacatataactcacactttcacaacaacactctcc-tcaagtgtgagtccatcactttatcgtgctcccc 18372905  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 147856 - 147794
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  147856 gatgtgggacatataactcacacttgcacacaacaacactccccctcaagtgtgagtccatca 147794  T

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Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 45123037 - 45122972
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatc 64  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||| ||||||||    
T  45123037 atccgatgtgggacatataactcacacttgcacacagcaacactccccctcaagtgtaagtccatc 45122972  T

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Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 147715 - 147626
Alignment:
Q  143 cttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||||| |||||||||||||   |||  ||||||||| |||  ||||| |||||||||||||||||||| ||||||||||    
T  147715 cttgtaccgctgttgctgctttctgcgcaaacggactggctgcctcgatcgtaccctttgtcgaaccggggctctgatatcactgttggg 147626  T

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Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 8918895 - 8918956
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatc 64  Q
    |||||||||||| ||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  8918895 gatgtgggacatgtaactcacacttgcacacaacaacactccccctcaagtgtgagtccatc 8918956  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 18373058 - 18373139
Alignment:
Q  1 atccgatgtgggacatataactcacact-tgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc 81  Q
    |||||| ||||||||||||| ||||||| | || | |||||||||  |||||||||||||||||||||||| ||||||||||    
T  18373058 atccgaagtgggacatataaatcacactgtacacaacaacactccatctcaagtgtgagtccatcactttatcgtgctcccc 18373139  T

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Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 18371783 - 18371863
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc 81  Q
    |||||||||| ||||||||||||||   | || | || |||||||||||||||||||||||||||||||| ||||| ||||    
T  18371783 atccgatgtgtgacatataactcacttctacacaacagcactccccctcaagtgtgagtccatcactttatcgtgcccccc 18371863  T

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Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 40518609 - 40518550
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||    
T  40518609 gatgtgggacatataactcacacttgaacac-aatactccccctcaagtgtgagtccatca 40518550  T

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Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 30359636 - 30359558
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctcccc 81  Q
    |||||| ||||||||||||||||||| | ||  ||||| |||||||||||||||||||||||| |||| | ||||||||    
T  30359636 gatgtgagacatataactcacacttgtacacaacaacattccccctcaagtgtgagtccatcaatttatcatgctcccc 30359558  T

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Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 30441110 - 30441071
Alignment:
Q  3 ccgatgtgggacatataactcacacttgcaaaccaacact 42  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30441110 ccgatgtgggacatataactcacacttgcaaaccaacact 30441071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 43274699 - 43274776
Alignment:
Q  6 atgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctcccc 81  Q
    ||||| || |||||||||||||||| | ||  |||||||  |||||||||||||||||||||||||| ||||||||||    
T  43274699 atgtgagatatataactcacacttgtacacaacaacactgtccctcaagtgtgagtccatcactttatcgtgctcccc 43274776  T

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Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 3669714 - 3669678
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacac 41  Q
    |||||||||||||||||||||||||||||||||||||    
T  3669714 gatgtgggacatataactcacacttgcaaaccaacac 3669678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 34835105 - 34835050
Alignment:
Q  174 gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| |||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  34835105 gaccggctgcctcggtcgtacccttcgtcgaacc-gggctctgataccactgttggg 34835050  T

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Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 34835498 - 34835439
Alignment:
Q  8 gtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||||    
T  34835498 gtgggacatataactcacccttgtacacagcaacactccccctcaagtgtgagtccatca 34835439  T

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Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 34835764 - 34835705
Alignment:
Q  8 gtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||||    
T  34835764 gtgggacatataactcacccttgtacacagcaacactccccctcaagtgtgagtccatca 34835705  T

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Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 6651534 - 6651476
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtcc 61  Q
    |||||||||| ||||||||||||||  ||||||| ||||||  ||||||||||||||||||    
T  6651534 atccgatgtgagacatataactcac--ttgcaaaacaacacctcccctcaagtgtgagtcc 6651476  T

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Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 41972189 - 41972158
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  41972189 atccgatgtgggacatataactcacacttgca 41972158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 9609017 - 9608932
Alignment:
Q  143 cttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgt 226  Q
    |||||||||| ||||| ||||| |||||||   |||| | | |||||||||  ||||| ||||||||||||| |||||||||||||    
T  9609017 cttgtaccgccgttgctgctttatgcgcaaacggaccggtttcctcggtcgtaccctttgtcgaaccggggcactgataccactgt 9608932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 3038417 - 3038446
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  3038417 atccgatgtgggacatataactcacacttg 3038446  T

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Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 25561943 - 25561972
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  25561943 atccgatgtgggacatataactcacacttg 25561972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 30359501 - 30359448
Alignment:
Q  174 gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| ||||||||||||| |||||||||||||| ||  |||||||||||||||||||    
T  30359501 gaccggctgcctcggtcg-tcccttcgtcgaacagg--ctctgataccactgttggg 30359448  T

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Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 147482 - 147454
Alignment:
Q  1 atccgatgtgggacatataactcacactt 29  Q
    |||||||||||||||||||||||||||||    
T  147482 atccgatgtgggacatataactcacactt 147454  T

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Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 1014383 - 1014411
Alignment:
Q  12 gacatataactcacacttgcaaaccaaca 40  Q
    |||||||||||||||||||||||||||||    
T  1014383 gacatataactcacacttgcaaaccaaca 1014411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 34835236 - 34835185
Alignment:
Q  5 gatgtgggacatataactcacacttg--caaaccaacactccccctcaagtg 54  Q
    ||||||||||||||||||||| ||||  || | |||||||||||||||||||    
T  34835236 gatgtgggacatataactcacccttgtacacagcaacactccccctcaagtg 34835185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41416298 - 41416335
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  41416298 atccgatgtgggacatataact--cacttgcaaaccaaca 41416335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 45122040 - 45122068
Alignment:
Q  4 cgatgtgggacatataactcacacttgca 32  Q
    |||||||||||||||||||||||||||||    
T  45122040 cgatgtgggacatataactcacacttgca 45122068  T

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Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 22304600 - 22304370
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgct-ccccttagagcggaagcttttg 99  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  || | | |||| ||||||  |||||||||| ||     
T  22304600 atccgatgtgggacatatagctcacacttgcaaaccaacactccccctcaagtgtgagtccatctattcatcatgctcccccttcaagcggaagctctt- 22304502  T
Q  100 actttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgc-ggctttctgcgcaatgaccagctgcctcggtcgctccctt 198  Q
    ||||||| ||||||| |||||||| |||||||||||||| |||||||||| ||||||||  ||||||||||||| |||| |||||||||||||  |||||    
T  22304501 actttgcttgtatcgtcgttcctgaacaaggagccacttactacttgtacagctgttgcttgctttctgcgcaacgaccggctgcctcggtcgtaccctt 22304402  T
Q  199 cgtcgaaccggggctctgataccactgttggg 230  Q
    ||||||||||||||||||||||||||||||||    
T  22304401 cgtcgaaccggggctctgataccactgttggg 22304370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 4823686 - 4823515
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagcttttga 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  4823686 atccgatgtgagacttataactcacacttgcaaaccaacactccccttcaagtgtgagtccatcactttaacgtgctcccc-tagagcggaagcttttta 4823588  T
Q  101 ctttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgc-ggctttctgcgcaa 172  Q
    |||||| ||||||||| |||||||||||||||||||||| | |||||||| | |||||  |||||||||||||    
T  4823587 ctttgcatgtatcgccattcctgcacaaggagccacttgttgcttgtaccaccgttgcttgctttctgcgcaa 4823515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 22303759 - 22303934
Alignment:
Q  53 tgtgagtccatcactttaacgtgctccccttagagcggaagcttttgacttt-gcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccg 151  Q
    ||||||||||||| || |||||| |||||| | ||||||||||||| ||||| ||||| ||||||||| ||||||||| ||||||||||| |||||||||    
T  22303759 tgtgagtccatcaattcaacgtgttcccctaa-agcggaagctttttacttttgcctgaatcgccgttgctgcacaagaagccacttgctgcttgtaccg 22303857  T
Q  152 ctgttgcggctttctgcgcaa-tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgtt 227  Q
      ||||| ||||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  22303858 tcgttgctgctttctgcgcaactgaccggcggcctctgtcgcacccttcgtcgaaccggggctctgataccactgtt 22303934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 11661982 - 11661846
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagctttt 98  Q
    |||| ||||||| ||| |||||||||||| || ||  ||||||||||||  ||||||||||||||||||||| |||||||| | ||||||||||||||||    
T  11661982 atccaatgtggggcatttaactcacacttacatacaacaacactcccccaaaagtgtgagtccatcactttatcgtgctcctcctagagcggaagctttt 11661883  T
Q  99 gactttgcctgtatcgccgttcctgcacaaggagcca 135  Q
     ||||||| |||||||||||| |||||||||||||||    
T  11661882 tactttgcatgtatcgccgttgctgcacaaggagcca 11661846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 15773220 - 15773099
Alignment:
Q  4 cgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagcttttgac 101  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||| ||    
T  15773220 cgatgtgggacatataactcacacttgcacacaacaacactccccctcaagtgtgagtccatcactttatcgtgctcccccaagagcggaagctttttac 15773121  T
Q  102 tttgcctgtatcgccgttcctgc 124  Q
     |||| |||||||| ||| ||||    
T  15773120 -ttgcttgtatcgctgttgctgc 15773099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 41359904 - 41360116
Alignment:
Q  17 ataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctc-cccttagagcggaagcttttgactttgcctgtatc 113  Q
    |||||||||||||||| ||  ||||||||||||| ||||||||||| |||  || | | ||||| |||||  || ||||||| || ||||||||||||||    
T  41359904 ataactcacacttgcacacaacaacactcccccttaagtgtgagtc-atctattcatcatgctctcccttcaagtggaagctctttactttgcctgtatc 41360002  T
Q  114 gccgttcctgcacaaggagccacttg--ctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttcgtcgaaccgggg 211  Q
    ||||||| ||||||||||||||||||  || |||||||||  ||||| ||||||||| ||| |||| |||||  ||||||  | |||||||||||||| |    
T  41360003 gccgttcttgcacaaggagccacttgctctgcttgtaccgtcgttgctgctttctgcacaacgaccggctgc--cggtcgtactcttcgtcgaaccggcg 41360100  T
Q  212 ctctgataccactgtt 227  Q
    ||||||||||||||||    
T  41360101 ctctgataccactgtt 41360116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 22304277 - 22304213
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22304277 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 22304213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 37990766 - 37990884
Alignment:
Q  1 atccgatgtgggacatataactcacacttg--caaaccaacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagctttt 98  Q
    ||||||||||| ||||||||||||||||||  || | |||||||||||||||| ||||||||||||| || | | ||| ||||| | |||||||||||||    
T  37990766 atccgatgtggaacatataactcacacttgtacacaacaacactccccctcaactgtgagtccatcaattcatcatgcccccctca-agcggaagctttt 37990864  T
Q  99 gactttgcctgtatcgccgtt 119  Q
     ||||||| ||||||||||||    
T  37990865 -actttgcatgtatcgccgtt 37990884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 32462689 - 32462752
Alignment:
Q  4 cgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatca 65  Q
    ||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||    
T  32462689 cgatgtgggacatataactcacacttgtacacaacaacactccccctcaagtgtgagtccatca 32462752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 53577616 - 53577540
Alignment:
Q  155 ttgcggctttctgcgcaa-tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| ||||||||||||| ||||| || ||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  53577616 ttgctgctttctgcgcaactgaccggcggcctcggtcgtacccttcgtcgaaccgggactctgataccactgttggg 53577540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 9240180 - 9240118
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 64  Q
    ||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||    
T  9240180 atccgatgtggaacatataactcacacttgcaca-caacactcctcctcaagtgtgagtccatc 9240118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 54017943 - 54018008
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatc 64  Q
    ||||||||| |||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||    
T  54017943 atccgatgtaggacatataactcacacttgcacacaacaatactccccctcaagtgtgagtccatc 54018008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 29644708 - 29644791
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacac---tccccctcaagtgtgagtccatcactttaacgtgctcccc 81  Q
    |||||||||||||||||||||||||||||||| || || ||    ||||||||||||||| | |||||||||| ||||||||||    
T  29644708 atccgatgtgggacatataactcacacttgcacacaaaaacattcccccctcaagtgtgacttcatcactttatcgtgctcccc 29644791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 21832470 - 21832532
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 64  Q
    |||| ||||||||||||||||||||||||||| |  |||||||| |||||||||||||||||||    
T  21832470 atccaatgtgggacatataactcacacttgcaca-taacactccgcctcaagtgtgagtccatc 21832532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 42342217 - 42342283
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatca 65  Q
    ||||||||||| |||||| | ||||||||||| ||  ||||||||||||||||||||||||||||||    
T  42342217 atccgatgtggaacatatgaatcacacttgcacacaacaacactccccctcaagtgtgagtccatca 42342283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 50612579 - 50612618
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50612579 atccgatgtgggacatataactcacacttgcaaaccaaca 50612618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 15773117 - 15773029
Alignment:
Q  143 cttgtaccgctgttgcggctttctgcgcaa-tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||| ||||||||| |||||||||  || ||||| || |||||| |||  |||||||||||| | ||||||||||||||||||||||    
T  15773117 cttgtatcgctgttgctgctttctgcataactgaccggcggcctcgatcgtacccttcgtcgaatcagggctctgataccactgttggg 15773029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 22304079 - 22304141
Alignment:
Q  5 gatgtgggacatataactcacacttg--caaaccaacactccccctcaagtgtgagtccatca 65  Q
    ||||||||||||||||||||||||||  || | ||||| || |||||||||||||||||||||    
T  22304079 gatgtgggacatataactcacacttgtacacaacaacattctccctcaagtgtgagtccatca 22304141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 37726535 - 37726496
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  37726535 atccgatgtgagacatataactcacacttgcaaaccaaca 37726496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39389101 - 39389062
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  39389101 atccgatgtaggacatataactcacacttgcaaaccaaca 39389062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 54018093 - 54018178
Alignment:
Q  144 ttgtaccgctgttgcggctttctgcgcaa--tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgtt 227  Q
    |||||||||  |||| |||||||||||||   |||| ||||||||| |||| |||||||| ||||||| |||||||| ||||||||    
T  54018093 ttgtaccgccattgctgctttctgcgcaaacggaccggctgcctcgatcgcacccttcgttgaaccggagctctgatgccactgtt 54018178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 53577716 - 53577659
Alignment:
Q  173 tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    ||||| || ||||||||||  |||||| |||||||||| |||||||||||||||||||    
T  53577716 tgaccggcggcctcggtcgtacccttcttcgaaccgggactctgataccactgttggg 53577659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 51886589 - 51886553
Alignment:
Q  4 cgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||| |||||||||||||||||||||||||||||    
T  51886589 cgatgtgagacatataactcacacttgcaaaccaaca 51886553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 1634442 - 1634473
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  1634442 atccgatgtgggacatataactcacacttgca 1634473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 8327935 - 8327904
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  8327935 atccgatgtgggacatataactcacacttgca 8327904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 12747879 - 12747910
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  12747879 atccgatgtgggacatataactcacacttgca 12747910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 25739552 - 25739583
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  25739552 atccgatgtgggacatataactcacacttgca 25739583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 39336356 - 39336387
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  39336356 atccgatgtgggacatataactcacacttgca 39336387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 33803184 - 33803234
Alignment:
Q  179 gctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttgg 229  Q
    |||||||| ||||  |||||||||||| || ||||||||||||||||||||    
T  33803184 gctgcctcagtcgtacccttcgtcgaatcgaggctctgataccactgttgg 33803234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 2300000 - 2299937
Alignment:
Q  8 gtgggacatataactcacacttgcaaaccaaca--ctccccctcaagtgtgagtccatcacttta 70  Q
    |||||||||||||| |||||||||| | |||||   |||||||||||||||||||||||| ||||    
T  2300000 gtgggacatataacccacacttgcaca-caacaatatccccctcaagtgtgagtccatcaattta 2299937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 3384398 - 3384435
Alignment:
Q  6 atgtgggacatataactcacacttgcaaaccaacactc 43  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  3384398 atgtgggacatataactcacgcttgcacaccaacactc 3384435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 11661566 - 11661537
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  11661566 atccgatgtgggacatataactcacacttg 11661537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 32463028 - 32463057
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  32463028 atccgatgtgggacatataactcacacttg 32463057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 35946553 - 35946524
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  35946553 atccgatgtgggacatataactcacacttg 35946524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 45901744 - 45901715
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  45901744 atccgatgtgggacatataactcacacttg 45901715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 52634707 - 52634678
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  52634707 atccgatgtgggacatataactcacacttg 52634678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 50051778 - 50052007
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc-ttagagcggaagcttttg 99  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || | | |||||||| ||  ||| |||||| ||     
T  50051778 atccgatgtgggacatataactcacacttgcaaaccaacattccccctcaagtgtgagtccattaattcatcatgctcccccttcaagcagaagctctt- 50051876  T
Q  100 actttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttc 199  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||| |  ||||||||||||||| |||  ||| |||||||||||||| |||||     
T  50051877 actttgccagtatcgccgttcctgcacaaggagccacttgctgcttgtactgtcgttgcggctttctgcccaaccaccggctgcctcggtcgcgcccttt 50051976  T
Q  200 gtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||||||||||||||||||||    
T  50051977 gtcgaaccggggctctgataccactgttggg 50052007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 44290585 - 44290806
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgct-ccccttagagcggaagcttttg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | | |||| ||||||  || ||||||| ||     
T  44290585 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatctattcatcatgctcccccttcaaggggaagctctt- 44290683  T
Q  100 actttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttc 199  Q
    ||||||||||||||| ||||||||||||||||||||        ||||||| | |||||||||||||||||||  ||| |||||||||||||| ||||||    
T  44290684 actttgcctgtatcgtcgttcctgcacaaggagcca--------ttgtaccaccgttgcggctttctgcgcaacaaccggctgcctcggtcgcacccttc 44290775  T
Q  200 gtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||||||||||||||||||||    
T  44290776 gtcgaaccggggctctgataccactgttggg 44290806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 48588615 - 48588843
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgct-ccccttagagcggaagcttttg 99  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||  || | | |||| ||||||  |||||||||| ||     
T  48588615 atccgatgtcggacatagaactcacacttgcaaaccaacactccccctcaagtgtgagtccatctattcatcatgctaccccttcaagcggaagctctt- 48588713  T
Q  100 actttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttc 199  Q
    | ||||| ||||||| |||||||||||||||||||||||||| |||||||||  ||||| ||||||||| |||||||| |||||||| ||||| ||||||    
T  48588714 attttgcatgtatcgtcgttcctgcacaaggagccacttgctgcttgtaccgtcgttgcagctttctgcacaatgaccggctgcctcagtcgcacccttc 48588813  T
Q  200 gtcgaaccggggctctgataccactgttgg 229  Q
    |||||||||||||||||||| || ||||||    
T  48588814 gtcgaaccggggctctgatatcattgttgg 48588843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3537274 - 3537496
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgct-ccccttagagcggaagcttttg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |||| ||||||  |||||||||| ||     
T  3537274 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcaattcatcttgctcccccttcaagcggaagctcttt 3537373  T
Q  100 actttgcctgtatcgccgttcctgcacaaggagc--cacttgctacttgtaccgctgttgc-ggctttctgcgcaatgaccagctgcctcggtcgctccc 196  Q
    || |||| ||||||| ||||||||||||||||||  |||||||| |||||||||| |||||  |||||||||     ||| | ||||||||||||  |||    
T  3537374 accttgcatgtatcgtcgttcctgcacaaggagccacacttgctgcttgtaccgccgttgcttgctttctgc-----gactaactgcctcggtcgtaccc 3537468  T
Q  197 ttcgtcgaaccggggctctgataccact 224  Q
    |||||||||||| |||||||||||||||    
T  3537469 ttcgtcgaaccgtggctctgataccact 3537496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 26661651 - 26661881
Alignment:
Q  3 ccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctc-cccttagagcggaagcttttg 99  Q
    |||||||||||||||||||||||||||| | ||  ||||||||||||| |||||||||||||||  || | | | ||| |||||  |||||||||| ||     
T  26661651 ccgatgtgggacatataactcacacttgtacacaacaacactcccccttaagtgtgagtccatctattcatcatactctcccttcaagcggaagctctt- 26661749  T
Q  100 actttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaa-tgaccagctgcctcggtcgctccctt 198  Q
    ||||||| ||||||| |||| ||||||||||||||||||| | |||||||||  ||||| ||||||||||||| ||||  || ||||||||||  |||||    
T  26661750 actttgcatgtatcgtcgttgctgcacaaggagccacttgttgcttgtaccgtcgttgctgctttctgcgcaattgactggcggcctcggtcgtaccctt 26661849  T
Q  199 cgtcgaaccggggctctgataccactgttggg 230  Q
    ||||||| || || ||| |||||||| |||||    
T  26661850 cgtcgaatcgaggttctaataccacttttggg 26661881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 229
Target Start/End: Original strand, 48588340 - 48588468
Alignment:
Q  101 ctttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttcg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |  ||||| ||  |||||||||||||||||||  ||| ||||||||||| || |||||||    
T  48588340 ctttgcctgtatcgccgttcctgcacaaggagccacttgttgtttgtatcgtcgttgcggctttctgcgcaacaaccggctgcctcggttgcacccttcg 48588439  T
Q  201 tcgaaccggggctctgataccactgttgg 229  Q
    | |||||||| ||||||||||||| ||||    
T  48588440 ttgaaccgggactctgataccacttttgg 48588468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 37556142 - 37556071
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcacttta 70  Q
    |||||||||||||||||||||||||||||| | ||  |||||||||||||||||||||||||||||||||||    
T  37556142 atccgatgtgggacatataactcacacttgtacacaacaacactccccctcaagtgtgagtccatcacttta 37556071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 41157402 - 41157311
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagct 95  Q
    |||||||||||||||||||||||||||| ||  ||| ||||||||| |||||||||||||||| |||| ||||||||||  ||||||||||||    
T  41157402 gatgtgggacatataactcacacttgcacacaacaatactcccccttaagtgtgagtccatcaatttatcgtgctcccc-cagagcggaagct 41157311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 22077249 - 22077311
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 64  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  22077249 atccgatgtgggacatataactcacacttgcaca-caacactccccctcaagtgtgtgtccatc 22077311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22077622 - 22077683
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccat 63  Q
    |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  22077622 atccgatgtgagacatataactcacacttgcaca-caacactccccctcaagtgtgagtccat 22077683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34364956 - 34364891
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatc 64  Q
    |||||||||| ||||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  34364956 atccgatgtgtgacatataactcacacttgcacacaacaacactccccctcaagtgtgagtccatc 34364891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 34364774 - 34364682
Alignment:
Q  140 ctacttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    ||||||||| ||| ||||| ||||||||| |||   |||| |||| || |||||  |||||||||||||||||||||||||||||||||||||    
T  34364774 ctacttgtatcgccgttgctgctttctgcacaaacggaccggctgtctgggtcgtacccttcgtcgaaccggggctctgataccactgttggg 34364682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44290952 - 44290993
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacact 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44290952 atccgatgtgggacatataactcacacttgcaaaccaacact 44290993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 11977309 - 11977251
Alignment:
Q  3 ccgatgtgggacatataactcacacttg--caaaccaacactccccctcaagtgtgagt 59  Q
    ||||||||||||||||||||||||||||  || | ||||||||||||||||||||||||    
T  11977309 ccgatgtgggacatataactcacacttgtacacagcaacactccccctcaagtgtgagt 11977251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 11977224 - 11977128
Alignment:
Q  128 aggagccacttgctacttgtaccgctgttgcggctttctgcgcaa-tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccact 224  Q
    |||||||||||||| |||||||||  ||||| ||||||||||||| |||||  | ||||||||||  ||||||||| |||| |||||||||| |||||    
T  11977224 aggagccacttgctgcttgtaccgtcgttgctgctttctgcgcaactgaccgacggcctcggtcgtacccttcgtcaaacc-gggctctgatgccact 11977128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 47379912 - 47379990
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc 81  Q
    ||||||||||||| |||||||||||||||||  | |||||||||||||||| ||| |||||| || || | ||||||||||    
T  47379912 atccgatgtgggatatataactcacacttgc--atcaacactccccctcaaatgtaagtccaacaattcatcgtgctcccc 47379990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 66399 - 66455
Alignment:
Q  174 gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| |||||||||||||  ||||||||||||||||| |||||||| ||||||||||    
T  66399 gaccggctgcctcggtcgtacccttcgtcgaaccgggactctgatatcactgttggg 66455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30630765 - 30630828
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||||||||| ||||||||| ||||||||||| |  ||||||||| |||||||||||||||||||    
T  30630765 atccgatgtgagacatataaatcacacttgcacat-aacactccctctcaagtgtgagtccatca 30630828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 31767094 - 31767144
Alignment:
Q  179 gctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  31767094 gctgcctcggtcgtacccttcgtcgaac-ggggctctgataccactgttggg 31767144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41759514 - 41759475
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  41759514 atccgatgtgtgacatataactcacacttgcaaaccaaca 41759475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 34649702 - 34649614
Alignment:
Q  143 cttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||  ||||  |||||||||||||   |||| |||||||||||||  |||||| |||||| |||||||||||||||||||||||    
T  34649702 cttgtaccgtcgttgttgctttctgcgcaaacggaccggctgcctcggtcgtacccttcatcgaac-ggggctctgataccactgttggg 34649614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 9956129 - 9956084
Alignment:
Q  185 tcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||  ||||||||||||||| |||||||||||||||||||||    
T  9956129 tcggtcgtacccttcgtcgaaccgaggctctgataccactgttggg 9956084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 37555990 - 37555903
Alignment:
Q  144 ttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    ||||||||| ||||| ||||| ||||||||  |||||||||||||| ||   ||||||| ||||  |||||||||||||||||||||||    
T  37555990 ttgtaccgccgttgctgctttttgcgcaatcggaccagctgcctcgatcatacccttcgccgaat-ggggctctgataccactgttggg 37555903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45494105 - 45494146
Alignment:
Q  1 atccgatgtgggacatataa-ctcacacttgcaaaccaacac 41  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  45494105 atccgatgtgggacatataaactcacacttgcaaaccaacac 45494146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 66215 - 66278
Alignment:
Q  1 atccgatgtgggacat-ataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 64  Q
    |||||||||| ||||| || ||||||||||||| || |||||| |||||||||||||||||||||    
T  66215 atccgatgtgagacatgattactcacacttgcacac-aacacttcccctcaagtgtgagtccatc 66278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 22077422 - 22077478
Alignment:
Q  174 gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| ||||||| |||||  |||||||||||||| |||||||||| |||||||||||    
T  22077422 gaccggctgccttggtcgtacccttcgtcgaacctgggctctgatgccactgttggg 22077478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 3550747 - 3550712
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3550747 gatgtgggacatataactcacacttgccaaccaaca 3550712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 41142403 - 41142372
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  41142403 atccgatgtgggacatataactcacacttgca 41142372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 50052150 - 50052189
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  50052150 atccgatgtgggacatataactcacacttaaaaaccaaca 50052189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 30630586 - 30630620
Alignment:
Q  196 cttcgtcgaaccggggctctgataccactgttggg 230  Q
    ||||||||||||||| |||||||||||||||||||    
T  30630586 cttcgtcgaaccgggactctgataccactgttggg 30630620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 32168823 - 32168853
Alignment:
Q  10 gggacatataactcacacttgcaaaccaaca 40  Q
    |||||||||||||||||||||||||||||||    
T  32168823 gggacatataactcacacttgcaaaccaaca 32168853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 17294608 - 17294579
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  17294608 atccgatgtgggacatataactcacacttg 17294579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 32594847 - 32594880
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaa 38  Q
    ||||| ||||||||||||||||||||||||||||    
T  32594847 gatgtaggacatataactcacacttgcaaaccaa 32594880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 34649469 - 34649440
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  34649469 atccgatgtgggacatataactcacacttg 34649440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 44043908 - 44043944
Alignment:
Q  4 cgatgtgggacatataactcacacttgcaaaccaacac 41  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  44043908 cgatgtgggacatataact-acacttgcaaaccaacac 44043944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 50469212 - 50469256
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacactccccctca 50  Q
    ||||| |||||||||||||||||||||| | |||||||||||||||    
T  50469212 gatgtaggacatataactcacacttgcaca-caacactccccctca 50469256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 3537495 - 3537587
Alignment:
Q  47 ctcaagtgtgagtccatcactttaacgtgctcccc-ttagagcggaagcttttgactttgcctgtatcgccgttcctgcacaaggagccactt 138  Q
    |||||||||||||||||||  | | | |||||||| ||  |||||||||| || || |||| ||| ||| ||||| |||||||||||||||||    
T  3537495 ctcaagtgtgagtccatcaaatcatcatgctcccccttcaagcggaagctctttaccttgcatgtgtcgtcgttcttgcacaaggagccactt 3537587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 22077776 - 22077812
Alignment:
Q  194 cccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||| |||||||||| |||||||||||    
T  22077776 cccttcgtcgaacctgggctctgatgccactgttggg 22077812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 24448296 - 24448245
Alignment:
Q  13 acatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||||||||| ||||||||| || ||||||||||||||| |||||| ||||||    
T  24448296 acatataacttacacttgcacac-aacactccccctcaattgtgagcccatca 24448245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 37850730 - 37850758
Alignment:
Q  4 cgatgtgggacatataactcacacttgca 32  Q
    |||||||||||||||||||||||||||||    
T  37850730 cgatgtgggacatataactcacacttgca 37850758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 41184198 - 41184246
Alignment:
Q  47 ctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagct 95  Q
    |||||||||||||||||||||| | |||||||||| |  ||||||||||    
T  41184198 ctcaagtgtgagtccatcacttcatcgtgctccccctcaagcggaagct 41184246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 5388 - 5158
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctcccc-ttagagcggaagcttt 97  Q
    ||||||||||| |||||||||||||||||||| ||  ||| |||| ||||||||||||||||||||| || | |||||||||| ||  |||||||||| |    
T  5388 atccgatgtggaacatataactcacacttgcacacaacaaaactctccctcaagtgtgagtccatcagttcatcgtgctcccccttcaagcggaagctct 5289  T
Q  98 tgactttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctccct 197  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||| |||  || |    
T  5288 t-actttgcctgtatcgccgttcctgcacaaggagccacttgctgcttgtaccgccgttgctgctttctgcgcaacgaccagctgcctcgatcgtacctt 5190  T
Q  198 tcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||| ||||||| |||| |||||||||||    
T  5189 tcgtcgaa-cggggctgtgatgccactgttggg 5158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 5542755 - 5542980
Alignment:
Q  4 cgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgct-ccccttagagcggaagcttttgact 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || | | |||| ||||||  |||||||||| |  |||    
T  5542755 cgatatgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatctattcatcatgcttccccttcaagcggaagctcta-act 5542853  T
Q  103 ttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttcgtc 202  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||||| ||||||||||||||| ||| ||||  |||||||||| ||   | |||||    
T  5542854 ttgcctgtatcgctgttcctgcacaaggagccacttgttgcttgtaccgccgttgcggctttctgcacaacgaccgactgcctcggttgcattcgtcgtc 5542953  T
Q  203 gaaccggggctctgataccactgttgg 229  Q
    ||||||  |||||||||||||||||||    
T  5542954 gaaccgaagctctgataccactgttgg 5542980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 14745424 - 14745649
Alignment:
Q  4 cgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc-ttagagcggaagcttttgact 102  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||  || | | |||||||| ||  |||||||||| || |||    
T  14745424 cgatgtgggacatataactcacagttgcaaaccaacactcccc-tcaagtttgagtacatctattcatcatgctcccccttcaagcggaagctctt-act 14745521  T
Q  103 ttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttcgtc 202  Q
    ||| ||||||||||||||||||||||||||||||||| | ||||||| |  |||||||||||||||| || || | ||||||| |||||| |||||| ||    
T  14745522 ttgtctgtatcgccgttcctgcacaaggagccacttgttgcttgtactgtcgttgcggctttctgcgtaacgatcggctgccttggtcgcacccttcatc 14745621  T
Q  203 gaaccggggctctgataccactgttggg 230  Q
    ||||||||||||||||||||||||||||    
T  14745622 gaaccggggctctgataccactgttggg 14745649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 29676934 - 29676703
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagctttt 98  Q
    ||||||||||||||||||||||||||| |||| ||  |||||| |||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||    
T  29676934 atccgatgtgggacatataactcacacctgcacacaacaacacaccccctcaagtgtgagtccatcactttatcgtgctccccccagaccggaagctttt 29676835  T
Q  99 gactttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaa-tgaccagctgcctcggtcgctccct 197  Q
     || |||| |||||  ||||| ||||||||||||||||||||| ||||||| |  ||||  ||||||||||||| ||| | || ||||| |||   ||||    
T  29676834 tac-ttgcttgtatttccgttgctgcacaaggagccacttgctgcttgtactgtcgttgttgctttctgcgcaactgatcggcggcctcagtcataccct 29676736  T
Q  198 tcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| ||||||||||||||||||||||||||||    
T  29676735 tcgttgaaccggggctctgataccactgttggg 29676703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 36178396 - 36178498
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagcttttga 100  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |    
T  36178396 atccgaagtgggacatataactcacacttgcaaaccaacagtccccctcaagtgtgagtccatcactttaatgtgttcccc-tagagcggaagcttttta 36178494  T
Q  101 cttt 104  Q
    ||||    
T  36178495 cttt 36178498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 37106219 - 37106156
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37106219 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 37106156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28531441 - 28531504
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  28531441 atccgatgtgggacatataactcacacttgcaca-caacactccccctcaagtgtgagtccatca 28531504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 7598636 - 7598577
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 64  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  7598636 gatgtgggacatataactcacacttgcacaccaacactccctctcaagtgtgagtccatc 7598577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38796345 - 38796410
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatc 64  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  38796345 atccgatgtgggacatataactcacacttgcacacaacaacactccccctcaagtgtgagtccatc 38796410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 36785690 - 36785786
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagct 95  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||||||| |||||||||||||||| || | | |||||||| |  ||||||||||    
T  36785690 atccgatgtgggacatataactcacacttgcacacaacaacactccccctaaagtgtgagtccatcaattcatcatgctccccctcaagcggaagct 36785786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 3673116 - 3673003
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccc-cttagagcggaagcttt 97  Q
    |||| ||||||||||||||||||||||||||| ||  ||||||||| |||||||||||||||||||| || | | ||||||| |||  ||||||||||||    
T  3673116 atccaatgtgggacatataactcacacttgcacacaacaacactcctcctcaagtgtgagtccatcaattcatcatgctccctcttcaagcggaagcttt 3673017  T
Q  98 tgactttgcctgtat 112  Q
    | ||||||| |||||    
T  3673016 t-actttgcatgtat 3673003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40679756 - 40679818
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 64  Q
    ||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  40679756 atccgatatgggacatataactcacatttgcacac-aacactccccctcaagtgtgagtccatc 40679818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 36178513 - 36178589
Alignment:
Q  155 ttgcggctttctgcgcaa-tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| ||||||||||||| ||||| |  |||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  36178513 ttgctgctttctgcgcaactgaccggtggccttggtcgcacccttcgtcgaaccggggctctgataccactattggg 36178589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 37106147 - 37106099
Alignment:
Q  182 gcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  37106147 gcctcagtcgcacccttcgtcgaaccggggctctgataccactgttggg 37106099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 40733911 - 40733848
Alignment:
Q  4 cgatgtgggacatataactcacacttgcaaacca--acactccccctcaagtgtgagtccatca 65  Q
    ||||||||||||||||||||||||||| | || |  ||||||||||||||||||||||||||||    
T  40733911 cgatgtgggacatataactcacacttgtacacaataacactccccctcaagtgtgagtccatca 40733848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31468873 - 31468926
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaag 52  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  31468873 atccgatgtgggacatataactcacacttgcacacaacaacactccccctcaag 31468926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 5543129 - 5543166
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacact 42  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5543129 gatgtgggacatataactcacacttgcaaaccaacact 5543166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36178732 - 36178772
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacac 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  36178732 atccgatgtgggacatataactcacacttgcaaactaacac 36178772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14745794 - 14745833
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  14745794 atccaatgtgggacatataactcacacttgcaaaccaaca 14745833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41283602 - 41283641
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  41283602 atccgatatgggacatataactcacacttgcaaaccaaca 41283641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 41678510 - 41678559
Alignment:
Q  15 atataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  41678510 atataactcacacttgcacac-aacactccccttcaagtgtgagtccatca 41678559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 7598491 - 7598403
Alignment:
Q  143 cttgtaccgctgttgcggctttctgcgcaatg-accagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||  ||||| ||||||||||||| | ||| ||| |||| ||||  |||||||||||||| ||||| |||||||| |||||||    
T  7598491 cttgtaccgtcgttgctgctttctgcgcaacggaccggctacctcagtcgtacccttcgtcgaacctgggctttgataccagtgttggg 7598403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 37105952 - 37105920
Alignment:
Q  4 cgatgtgggacatataactcacacttgcaaacc 36  Q
    |||||||||||||||||||||||||||||||||    
T  37105952 cgatgtgggacatataactcacacttgcaaacc 37105920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 962629 - 962598
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  962629 atccgatgtgggacatataactcacacttgca 962598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1769923 - 1769884
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  1769923 atccgatgtgtgacatataactcacacttgcacaccaaca 1769884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 30323487 - 30323430
Alignment:
Q  9 tgggacatataactcacacttgcaaaccaaca--ctccccctcaagtgtgagtccatca 65  Q
    ||||||||||||| |||||||||| || ||||  |||||||||||||||||||||||||    
T  30323487 tgggacatataacacacacttgcacac-aacaatctccccctcaagtgtgagtccatca 30323430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 35580850 - 35580881
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  35580850 atccgatgtgggacatataactcacacttgca 35580881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 40733544 - 40733482
Alignment:
Q  5 gatgtgggacatataactcacacttg--caaaccaacactccccctcaagtgtgagtccatca 65  Q
    ||||||||||||||||||||||||||  || |  |||||| ||||||||||||||||| ||||    
T  40733544 gatgtgggacatataactcacacttgtacacaataacacttcccctcaagtgtgagtctatca 40733482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 42515031 - 42514981
Alignment:
Q  13 acatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 64  Q
    ||||||||||||||| |||| || ||||||||||||||| ||||||||||||    
T  42515031 acatataactcacacctgcacac-aacactccccctcaaatgtgagtccatc 42514981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15880294 - 15880233
Alignment:
Q  1 atccgatgtgggacatataactcacacttg--caaaccaacactccccctcaagtgtgagtc 60  Q
    ||||||||||| ||||||||||||||||||  || | ||||||| ||||| |||||||||||    
T  15880294 atccgatgtggaacatataactcacacttgtacacaacaacacttccccttaagtgtgagtc 15880233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 37894824 - 37894881
Alignment:
Q  6 atgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 64  Q
    ||||||||||||||||||||| ||||| | ||| ||||||||| |||| ||||||||||    
T  37894824 atgtgggacatataactcacatttgcaca-caatactcccccttaagtatgagtccatc 37894881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 40734147 - 40734063
Alignment:
Q  143 cttgtaccgctgttgcggctttctgcgcaa--tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgt 226  Q
    ||||||||| |||||| |||||||||||||    ||| |||||||||||||  ||||| | |||| ||||||||||||||||||||    
T  40734147 cttgtaccgttgttgctgctttctgcgcaaacgaaccggctgcctcggtcgtaccctttgacgaa-cggggctctgataccactgt 40734063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 40734300 - 40734243
Alignment:
Q  10 gggacatataactcacacttgcaaacca--acactccccctcaagtgtgagtccatca 65  Q
    ||||||||||||||||||||| | || |  |||||||||||||||||||| |||||||    
T  40734300 gggacatataactcacacttgtacacaataacactccccctcaagtgtgattccatca 40734243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 6421416 - 6421387
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  6421416 atccgatgtgggacatataactcacacttg 6421387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 33561582 - 33561641
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    ||||||| |||||||||||||||||||| | ||||| ||||| ||||||| | ||||||||    
T  33561582 gatgtggaacatataactcacacttgcaca-caacattccccatcaagtgcgtgtccatca 33561641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 35580671 - 35580699
Alignment:
Q  194 cccttcgtcgaaccggggctctgatacca 222  Q
    |||||||||||||||||||||||||||||    
T  35580671 cccttcgtcgaaccggggctctgatacca 35580699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 36785893 - 36785928
Alignment:
Q  194 cccttcgtcgaaccggggctctgataccactgttggg 230  Q
    ||||||||||||| |||||||||||||||||||||||    
T  36785893 cccttcgtcgaac-ggggctctgataccactgttggg 36785928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 14681537 - 14681323
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc--ttagagcggaagcttttgact 102  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  || | | ||||||||  ||  |||||||||| || |||    
T  14681537 gatgtgggacatataacttacacttgcaaaccaacactccccctcaagtgtgagtccatctattcatcatgctccccccttcaagcggaagctctt-act 14681439  T
Q  103 ttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttcgtc 202  Q
    |||| ||||||||| |||||||| ||||||||| |||||  |||||||||||||||||||||||||||||  ||| |||||||||||||| |||||| ||    
T  14681438 ttgcatgtatcgcc-ttcctgcataaggagccatttgctgtttgtaccgctgttgcggctttctgcgcaacaaccggctgcctcggtcgcacccttcatc 14681340  T
Q  203 gaaccggggctctgata 219  Q
     ||||||||||||||||    
T  14681339 caaccggggctctgata 14681323  T

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Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37533137 - 37533347
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagcttttga 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| |    
T  37533137 atccaatgtgggacatataactcacacttgcaaaccaacactccccctcaagcgtgagtccatcactttaacgtgttcccc-tagagcggaagcttttta 37533235  T
Q  101 ctttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaa-tgaccagctgcctcggtcgctcccttc 199  Q
    ||||| |||||||||||                   ||||| |||||||||  ||||| ||||||| ||||| ||||| || ||||||||||| ||||||    
T  37533236 ctttgtctgtatcgccg-------------------ttgctgcttgtaccgtcgttgctgctttctacgcaactgaccggcggcctcggtcgcacccttc 37533316  T
Q  200 gtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||||||||||||||||||||    
T  37533317 gtcgaaccggggctctgataccactgttggg 37533347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 22566789 - 22567021
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagctttt 98  Q
    |||||||||||||||||| ||||||||||||| ||  |||||||||||||||| ||| |||| ||||||||| ||||||||||  |||||||||||||||    
T  22566789 atccgatgtgggacatattactcacacttgcatacaacaacactccccctcaaatgttagtctatcactttatcgtgctccccccagagcggaagctttt 22566888  T
Q  99 gactttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaa-tgaccagctgcctcggtcgctccct 197  Q
     || |||| ||||| | |||| ||||||||||||||||||||| |||||||||   |||| | ||||||| ||| | ||| |  |||| |||||  ||||    
T  22566889 tac-ttgcttgtattgtcgttgctgcacaaggagccacttgcttcttgtaccgtctttgctgttttctgcacaactaaccggtggccttggtcgtaccct 22566987  T
Q  198 tcgtcgaacc-ggggctctgataccactgttggg 230  Q
    |||||| ||| ||||||||||||||||| |||||    
T  22566988 tcgtcggaccgggggctctgataccactattggg 22567021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 7554056 - 7553937
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagctttt 98  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||| || | |||||||||| |  |||||||||| ||    
T  7554056 atccgatgtgggacatataactcacacttgcacacaacaacactccccctcaagtgtgagtccatcaattcatcgtgctccccctcaagcggaagctctt 7553957  T
Q  99 gactttgcctgtatcgccgtt 119  Q
     ||||||| ||| ||||||||    
T  7553956 -actttgcatgtgtcgccgtt 7553937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 37532897 - 37532994
Alignment:
Q  134 cacttgctacttgtaccgctgttgcggctttctgcgcaa-tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||| ||||||| |  ||||| ||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37532897 cacttgctgcttgtacagtcgttgctgctttctgcgcaactgaccggcggcctcggtcgcacccttcgtcgaaccggggctctgataccactgttggg 37532994  T

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Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 37532822 - 37532896
Alignment:
Q  35 ccaacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagcttttgactttgcctgt 110  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||| |||||||||||    
T  37532822 ccaacactccccctcaagtgtgagtccttcactttaacgtgttcccc-tatagcggaagctttttactttgcctgt 37532896  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 30244732 - 30244667
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatc 64  Q
    |||| ||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  30244732 atccaatgtgggacatataactcacacttgcacacaacaacactccccctcaagtgtgagtccatc 30244667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30255370 - 30255308
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtcc 61  Q
    ||||||||||||||||||||| |||||||||| ||  ||||||||||||||||||||||||||    
T  30255370 atccgatgtgggacatataacgcacacttgcacacaacaacactccccctcaagtgtgagtcc 30255308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 30244301 - 30244236
Alignment:
Q  1 atccgatgtgggacatataactcacacttg--caaaccaacactccccctcaagtgtgagtccatc 64  Q
    ||||||||||||||||||||||||||||||  || | |||||||||||||||||||||||| ||||    
T  30244301 atccgatgtgggacatataactcacacttgtacacaacaacactccccctcaagtgtgagttcatc 30244236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 30245108 - 30245043
Alignment:
Q  1 atccgatgtgggacatataactcacacttg--caaaccaacactccccctcaagtgtgagtccatc 64  Q
    ||||||||||| ||||||||||||||||||  || | ||||||||||||||||||| |||||||||    
T  30245108 atccgatgtggaacatataactcacacttgtacacaacaacactccccctcaagtgcgagtccatc 30245043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 45697801 - 45697753
Alignment:
Q  124 cacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaa 172  Q
    |||||||||||||||||| |||||||||| ||||| |||||||||||||    
T  45697801 cacaaggagccacttgcttcttgtaccgccgttgctgctttctgcgcaa 45697753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 30245521 - 30245463
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtcc 61  Q
    |||||||||||||||||||||||||||| ||  ||||| ||||||||||||||| ||||    
T  30245521 gatgtgggacatataactcacacttgcacacaacaacagtccccctcaagtgtgtgtcc 30245463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 40094525 - 40094583
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 64  Q
    ||||| |||||||||||||||||||||| | ||||||||| ||| |||||||||||||||    
T  40094525 gatgttggacatataactcacacttgcaca-caacactcctcctaaagtgtgagtccatc 40094583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 37345933 - 37345868
Alignment:
Q  15 atataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc 81  Q
    |||||||||||||||||| || |||||||||| |||||||||||| ||||| || | ||||||||||    
T  37345933 atataactcacacttgcacac-aacactccccttcaagtgtgagttcatcaattcatcgtgctcccc 37345868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14681318 - 14681281
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaa 38  Q
    |||| |||||||||||||||||||||||||||||||||    
T  14681318 atccaatgtgggacatataactcacacttgcaaaccaa 14681281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29157596 - 29157559
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaa 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  29157596 atccggtgtgggacatataactcacacttgcaaaccaa 29157559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 40094664 - 40094747
Alignment:
Q  145 tgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgtt 227  Q
    |||||||| |||||  ||||||||||||   |||| |||||||||||||  |||||||||||| | |||||||||||||||||||    
T  40094664 tgtaccgccgttgctactttctgcgcaaacggaccggctgcctcggtcgtacccttcgtcgaa-cagggctctgataccactgtt 40094747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 1085543 - 1085599
Alignment:
Q  174 gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| ||||||||||||   |||||| ||||||||||||| ||||||||||||||||    
T  1085543 gaccggctgcctcggtcatacccttcatcgaaccggggctatgataccactgttggg 1085599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 1085743 - 1085774
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  1085743 atccgatgtgggacatataactcacacttgca 1085774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7517611 - 7517580
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  7517611 atccgatgtgggacatataactcacacttgca 7517580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 28300473 - 28300559
Alignment:
Q  143 cttgtaccgctgttgcggctttctgcgcaat-gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttgg 229  Q
    |||||||||  ||||| |||||||||||||| ||||  ||||||||||||  |||||||||||| |  ||||||||||||| ||||||    
T  28300473 cttgtaccgtcgttgctgctttctgcgcaatggaccgactgcctcggtcgtacccttcgtcgaatc-aggctctgataccagtgttgg 28300559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 36622991 - 36622960
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  36622991 atccgatgtgggacatataactcacacttgca 36622960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 45433505 - 45433424
Alignment:
Q  140 ctacttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgatac 220  Q
    ||||||| ||||| ||||| ||||| |||||||   ||||||||||||||||||  ||||| |||||||| ||||||||||||    
T  45433505 ctacttgaaccgccgttgctgctttatgcgcaaacggaccagctgcctcggtcgtaccctttgtcgaacc-gggctctgatac 45433424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 45434667 - 45434548
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgct-ccccttagagcggaagcttttg 99  Q
    |||||||||||||||||||||| ||||||| | || |  || ||||| ||||||||||||| ||| || | | |||| ||||||  |||||||||||||     
T  45434667 atccgatgtgggacatataacttacacttgtacacaacaacacccccccaagtgtgagtccttcaattcatcatgctcccccttcaagcggaagcttttt 45434568  T
Q  100 actttgcctgtatcgccgtt 119  Q
       |||| ||||||||||||    
T  45434567 tacttgcttgtatcgccgtt 45434548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 8128387 - 8128423
Alignment:
Q  194 cccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  8128387 cccttcgtcgaaccagggctttgataccactgttggg 8128423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 41910721 - 41910749
Alignment:
Q  1 atccgatgtgggacatataactcacactt 29  Q
    |||||||||||||||||||||||||||||    
T  41910721 atccgatgtgggacatataactcacactt 41910749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 48243356 - 48243419
Alignment:
Q  144 ttgtaccgctgttgcggctttctgcgcaa--tgaccagctgcctcggtcgctcccttcgtcgaa 205  Q
    ||||||||| ||||| |||||||||||||   |||| |||||||||||||  ||||||||||||    
T  48243356 ttgtaccgccgttgctgctttctgcgcaaacggaccggctgcctcggtcgtacccttcgtcgaa 48243419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 269 - 497
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc-ttagagcggaagcttttg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||   || | | |||||||| ||  |||||||||| ||     
T  269 atccgatgtgggacatataactcacacttgcaaaccaacactccccc-caaatgtgagtccatttattcatcatgctcccccttcaagcggaagctctt- 366  T
Q  100 actttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttc 199  Q
    | ||| ||||||||   ||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||| ||||  || ||||||| || ||||||    
T  367 agtttacctgtatcattgttcctgcacaaggagccacttgctgcttgtactgctgttgcgactttcttcgcaacgaccgactacctcggttgcacccttc 466  T
Q  200 gtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||||||||||||||||||||    
T  467 gtcgaaccggggctctgataccactgttggg 497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 6500853 - 6500626
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc-ttagagcggaagcttttg 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||  || | | |||||||| ||  || ||||||| ||     
T  6500853 atccgatgtgg-acatataactcacacttgcaaaccaacactccccatcaagtgtgagtccatctattcatcatgctcccccttcaaggggaagctctt- 6500756  T
Q  100 actttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttc 199  Q
    ||||||| ||||||| ||||||| || ||||||||||||||| ||| |||||| ||||||||||||||||||| |||  ||||||||||| || ||||||    
T  6500755 actttgc-tgtatcggcgttcctacataaggagccacttgctgcttataccgccgttgcggctttctgcgcaacgactggctgcctcggttgcacccttc 6500657  T
Q  200 gtcgaaccggggctctgataccactgttggg 230  Q
    ||||||||||  |||||||||||||||||||    
T  6500656 gtcgaaccggaactctgataccactgttggg 6500626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 9498496 - 9498629
Alignment:
Q  86 agcggaagcttttgactttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcct 185  Q
    |||||||||| || ||||||| |||||| ||||||||||||||||||||||||||| |||||| ||| ||||| ||||||||||||| |||| |||||||    
T  9498496 agcggaagctctt-actttgcatgtatcaccgttcctgcacaaggagccacttgctgcttgtagcgccgttgcagctttctgcgcaacgaccggctgcct 9498594  T
Q  186 cggtcgctcccttcgtcgaaccggggctctgatacc 221  Q
    ||||||  ||||| |||||| |||||||||||||||    
T  9498595 cggtcgtaccctttgtcgaa-cggggctctgatacc 9498629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 3295142 - 3295266
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac----caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagctt 96  Q
    ||||||||||||||||||| |||||||||||| ||    ||||||||||||||||||||||||||||||||||  |||||||||| |  ||||||||||     
T  3295142 atccgatgtgggacatata-ctcacacttgcacacacaacaacactccccctcaagtgtgagtccatcactttttcgtgctcccccttaagcggaagctc 3295240  T
Q  97 ttgactttgcctgtatcgccgttcctgc 124  Q
    || || |||| |||||||||||| ||||    
T  3295241 tt-ac-ttgcttgtatcgccgttgctgc 3295266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 624222 - 624134
Alignment:
Q  6 atgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagct 95  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||  || | | ||||||||||  ||||||||||    
T  624222 atgtgggacatataactcacacttgcaaaccaacacttcccctcaagtgtga-tccatctattcatcatgctcccctttaagcggaagct 624134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 32487661 - 32487576
Alignment:
Q  137 ttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgatacca 222  Q
    ||||| |||||||||| ||||||||||||||| ||| || | |||||||| ||||| |||||||||||| ||||||||||||||||    
T  32487661 ttgctgcttgtaccgccgttgcggctttctgcacaacgatcggctgcctcagtcgcacccttcgtcgaatcggggctctgatacca 32487576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26074909 - 26074975
Alignment:
Q  1 atccgatgtgggacatataactcacacttg--caaaccaacactccccctcaagtgtgagtccatca 65  Q
    ||||||||||||||||||||||||||||||  || | ||||||||||||||||||||||||||||||    
T  26074909 atccgatgtgggacatataactcacacttgtacacaacaacactccccctcaagtgtgagtccatca 26074975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 24489335 - 24489394
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||    
T  24489335 gatgtgggacatataactcacacttgaacac-aacactccccctcaagtgtgagtccatca 24489394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 26074273 - 26074330
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagt 59  Q
    |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  26074273 atccgatgtgtgacatataactcacacttgcaca-caacactccccctcaagtgtgagt 26074330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 36522027 - 36522086
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||||||||||||  | |||||||| |||||||||||||||||||||    
T  36522027 gatgtgggacatataactcacacttgcgca-caacactctccctcaagtgtgagtccatca 36522086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5723918 - 5723957
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5723918 atccgatgtgggacatataactcacacttgcaaaccaaca 5723957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32487425 - 32487386
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32487425 atccgatgtgggacatataactcacacttgcaaaccaaca 32487386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 13415887 - 13415951
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatc 64  Q
    |||||||||||||||||||||||||||||||| ||  || |||| |||||||||||||||||||||    
T  13415887 atccgatgtgggacatataactcacacttgcacacaacagcact-cccctcaagtgtgagtccatc 13415951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 26075058 - 26075140
Alignment:
Q  148 accgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttgg 229  Q
    ||||| ||||| |||||||||||||   |||| |||||||||||||  |||||||||||| || ||||||||||||||||||||    
T  26075058 accgccgttgctgctttctgcgcaaacagaccggctgcctcggtcgtacccttcgtcgaa-cgaggctctgataccactgttgg 26075140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 623849 - 623810
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  623849 atccgatgtgagacatataactcacacttgcaaaccaaca 623810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13785736 - 13785794
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtc 60  Q
    ||||||| ||||||||||||||||||||| || | |||||||||||||||| ||||||||    
T  13785736 atccgatttgggacatataactcacacttccaca-caacactccccctcaaatgtgagtc 13785794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26074643 - 26074577
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaa--cactccccctcaagtgtgagtccatca 65  Q
    ||||||| ||| |||||||||||||||||| | || ||  |||||||||||||||||||||||||||    
T  26074643 atccgatatggaacatataactcacacttgtacacaaaaacactccccctcaagtgtgagtccatca 26074577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27502163 - 27502202
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  27502163 atccaatgtgggacatataactcacacttgcaaaccaaca 27502202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31509654 - 31509589
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca--ctccccctcaagtgtgagtccatca 65  Q
    |||||||||| ||||||||||||||||||||| | |||||  ||| |||||||||||||||||||||    
T  31509654 atccgatgtgagacatataactcacacttgcaca-caacaatctctccctcaagtgtgagtccatca 31509589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36492344 - 36492378
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  36492344 atccgatgtgggacatataactcacacttgcaaac 36492378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 795196 - 795249
Alignment:
Q  93 gcttttgactttgcctgtatcgccgttcctgcacaaggagccacttgctacttg 146  Q
    |||||| |||||| ||||||| ||||| ||||||||||||||||||||| ||||    
T  795196 gctttttactttgtctgtatcaccgttgctgcacaaggagccacttgctgcttg 795249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6500481 - 6500443
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  6500481 atccgatgtgg-acatataactcacacttgcaaaccaaca 6500443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 12662779 - 12662810
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  12662779 atccgatgtgggacatataactcacacttgca 12662810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 15370426 - 15370380
Alignment:
Q  20 actcacacttgcaaac--caacactccccctcaagtgtgagtccatc 64  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||    
T  15370426 actcacacttgcacacaacaacactccccctcaagtgtgagtccatc 15370380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 35150038 - 35150007
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  35150038 atccgatgtgggacatataactcacacttgca 35150007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 36568694 - 36568725
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  36568694 atccgatgtgggacatataactcacacttgca 36568725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 38427431 - 38427396
Alignment:
Q  194 cccttcgtcgaaccggggctctgataccactgttgg 229  Q
    |||||||||||||||||||||| |||||||||||||    
T  38427431 cccttcgtcgaaccggggctctaataccactgttgg 38427396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 40296442 - 40296473
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  40296442 atccgatgtgggacatataactcacacttgca 40296473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 299520 - 299490
Alignment:
Q  1 atccgatgtgggacatataactcacacttgc 31  Q
    |||||||||||||||||||||||||||||||    
T  299520 atccgatgtgggacatataactcacacttgc 299490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 13416036 - 13416124
Alignment:
Q  143 cttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| ||||| ||||| |||||||||||||   |||| | |||||||||||  ||||||| ||||| ||| |||||||||||||||||||    
T  13416036 cttgcaccgccgttgctgctttctgcgcaaacggaccggttgcctcggtcgtacccttcgacgaac-gggactctgataccactgttggg 13416124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 26074492 - 26074403
Alignment:
Q  143 cttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| ||||| ||||| |||||||||||||   ||| ||||| ||||||||  ||||| ||| ||||||||||||||| ||| |||||||    
T  26074492 cttgcaccgccgttgctgctttctgcgcaaacagactagctgtctcggtcgtaccctttgtcaaaccggggctctgatgccattgttggg 26074403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 41170665 - 41170627
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaac 39  Q
    |||||||||||||||||||||||||| || |||||||||    
T  41170665 atccgatgtgggacatataactcacaattacaaaccaac 41170627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 1028644 - 1028673
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  1028644 atccgatgtgggacatataactcacacttg 1028673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 299721 - 299666
Alignment:
Q  174 gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| ||||||| | |||| ||||||||||||| | |||||||||||||||||||||    
T  299721 gaccggctgccttgatcgcacccttcgtcgaac-gaggctctgataccactgttggg 299666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 5660326 - 5660290
Alignment:
Q  4 cgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||||||| |||||||||||||| |||||||||||||    
T  5660326 cgatgtggaacatataactcacatttgcaaaccaaca 5660290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 9498785 - 9498821
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacac 41  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  9498785 gatgtgagacatataactcacatttgcaaaccaacac 9498821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 15370127 - 15370099
Alignment:
Q  4 cgatgtgggacatataactcacacttgca 32  Q
    |||||||||||||||||||||||||||||    
T  15370127 cgatgtgggacatataactcacacttgca 15370099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 25328167 - 25328111
Alignment:
Q  174 gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||| ||||||||| |||  ||||||||||||  ||||||||| |||||||||||||    
T  25328167 gaccggctgcctcgttcgtgcccttcgtcgaaggggggctctggtaccactgttggg 25328111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 35150775 - 35150747
Alignment:
Q  4 cgatgtgggacatataactcacacttgca 32  Q
    |||||||||||||||||||||||||||||    
T  35150775 cgatgtgggacatataactcacacttgca 35150747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 35151066 - 35151038
Alignment:
Q  4 cgatgtgggacatataactcacacttgca 32  Q
    |||||||||||||||||||||||||||||    
T  35151066 cgatgtgggacatataactcacacttgca 35151038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36522364 - 36522427
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||| ||||| |||||||||||||||||| || | |||||||||||||||| ||| | |||||||    
T  36522364 atccaatgtgagacatataactcacactttcata-caacactccccctcaattgtaaatccatca 36522427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 38427553 - 38427525
Alignment:
Q  36 caacactccccctcaagtgtgagtccatc 64  Q
    |||||||||||||||||||||||||||||    
T  38427553 caacactccccctcaagtgtgagtccatc 38427525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 18932887 - 18933102
Alignment:
Q  3 ccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtgctcccc-ttagagcggaagcttttgac 101  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||  || | | |||||||| ||  ||||||| || || |     
T  18932887 ccgatgtgggacatataactcagacttgcaaaccaacac-ccccctcaagtgtgagtctatctattcatcatgctcccccttcaagcggaaactctt-at 18932984  T
Q  102 tttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttcgt 201  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||| |||  ||| |||||||||||||| | ||||||    
T  18932985 tttacctgtatcgccgttcctgcacaaggagccacttgctgcttgtaccgccgttgcgactttctgcacaaccaccggctgcctcggtcgcacacttcgt 18933084  T
Q  202 cgaaccggggctctgata 219  Q
    ||||||||||||||||||    
T  18933085 cgaaccggggctctgata 18933102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 41370662 - 41370532
Alignment:
Q  100 actttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaatgaccagctgcctcggtcgctcccttc 199  Q
    ||||| |||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| |||| |||| |||||||||||||| ||||||    
T  41370662 actttacctgtatcgccgttcctgcacaaggagctacttgctgcttgtaccgccgttgcggctttctgtgcaacgaccggctgcctcggtcgcacccttc 41370563  T
Q  200 gtcgaaccggggctctgataccactgttggg 230  Q
    ||||||  |||||||||||| ||||||||||    
T  41370562 gtcgaatgggggctctgatatcactgttggg 41370532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 230
Target Start/End: Complemental strand, 10246237 - 10246095
Alignment:
Q  89 ggaagcttttgactttgcctgtatcgccgttcctgcacaaggagccacttgctacttgtaccgctgttgcggctttctgcgcaa-tgaccagctgcctcg 187  Q
    |||||||||| ||||||| ||||| |||||| ||||||||| ||||||||| | |||||||||  ||||| ||||||||| ||| ||||  || |||||     
T  10246237 ggaagctttttactttgcatgtatagccgttgctgcacaagaagccacttgttgcttgtaccgtcgttgctgctttctgcacaactgacaggcggcctca 10246138  T
Q  188 gtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    ||||  |||||| ||||||||||| ||||||||||||||||||    
T  10246137 gtcgtacccttcatcgaaccggggttctgataccactgttggg 10246095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 3341083 - 3340982
Alignment:
Q  130 gagccacttgctacttgtaccgctgttgcggctttctgcgcaa-tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttg 228  Q
    |||||||||| |  ||||||||  ||||| ||||||||||||| ||||||||  |||||||||  || ||||||||||||||||||||||||||||||||    
T  3341083 gagccacttgttgtttgtaccgtcgttgctgctttctgcgcaactgaccagcgacctcggtcgtaccgttcgtcgaaccggggctctgataccactgttg 3340984  T
Q  229 gg 230  Q
    ||    
T  3340983 gg 3340982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 44620691 - 44620595
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagct 95  Q
    |||||||||||||||||||||||||||||||| ||  | ||||||| |||||||||||||||||||| || | ||||||||||  | ||||||||||    
T  44620691 atccgatgtgggacatataactcacacttgcacacaacgacactccacctcaagtgtgagtccatcaattcatcgtgctcccccaaaagcggaagct 44620595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 45496803 - 45496726
Alignment:
Q  154 gttgcggctttctgcgcaa-tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    ||||| ||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45496803 gttgctgctttctacgcaactgaccggcggcctcggtcgcacccttcgtcgaaccggggctctgataccactgttggg 45496726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 3341159 - 3341083
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtg 75  Q
    |||| ||||||||||||||||||||||||||| ||  ||||||||  ||||||||||||||||||||||||| ||||    
T  3341159 atccaatgtgggacatataactcacacttgcacacaacaacactctgcctcaagtgtgagtccatcactttatcgtg 3341083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 44621457 - 44621361
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaacca--acactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagct 95  Q
    |||| |||| |||||||||||||||||||||| || |  |||||||||||||||||||||||||||| || | ||||||||||  | ||||||||||    
T  44621457 atcccatgttggacatataactcacacttgcacacaacgacactccccctcaagtgtgagtccatcaattcatcgtgctcccccaaaagcggaagct 44621361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 36629268 - 36629205
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||||    
T  36629268 atccgatgtgggacatataactcacacttg-aacacaacactccccctcaagtgtgagcccatca 36629205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 2740953 - 2740868
Alignment:
Q  144 ttgtaccgctgttgcggctttctgcgcaa--tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttg 228  Q
    ||||||||||||||| |||||||||||||   || | |||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  2740953 ttgtaccgctgttgctgctttctgcgcaaacggatcggctgcctcggtcgtacccttcgtcgaa-cggggctctgataccactgttg 2740868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49076573 - 49076643
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcacttt 69  Q
    ||||||| ||| |||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||    
T  49076573 atccgatatggtacatataactcacacttgcacacaacaacactcctcctcaagtgtgagtccatcacttt 49076643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 2741098 - 2740984
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatcactttaacgtg--ctccccttagagcggaagcttttgact 102  Q
    |||||||||||||||||||||||||||| |  |||||||||| |||||||||||||||||| || | | ||  ||||||||  |||||||||| || |||    
T  2741098 gatgtgggacatataactcacacttgcaca-taacactccccttcaagtgtgagtccatcaattcatcatgctctccccttcaagcggaagctctt-act 2741001  T
Q  103 ttgcctgtatcgccgtt 119  Q
    ||||  |||||||||||    
T  2741000 ttgctcgtatcgccgtt 2740984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 20826101 - 20826013
Alignment:
Q  143 cttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttgg 229  Q
    |||||||||| ||||| |||||||||||||   |||| |||||||||||||  ||||||||||||  ||||||||||| ||||||||||    
T  20826101 cttgtaccgccgttgctgctttctgcgcaaatggaccggctgcctcggtcgtacccttcgtcgaattggggctctgatgccactgttgg 20826013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 16889315 - 16889375
Alignment:
Q  36 caacactccccctcaagtgtgagtccatcactttaa-cgtgctccccttagagcggaagct 95  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |  ||||||||||    
T  16889315 caacactccccctcaagtgtgagtccatcactttaatcgtgctccccctcaagcggaagct 16889375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 52884918 - 52884856
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtcca 62  Q
    |||||||||||||||||||||||||||||||| ||  ||||||| |||||||||||||||||||    
T  52884918 atccgatgtgggacatataactcacacttgcacacaacaacact-cccctcaagtgtgagtcca 52884856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 41370732 - 41370673
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtcc 61  Q
    ||||||| ||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  41370732 atccgatatgggatatataactcactctttcaaaccaacact-cccctcaagtgtgagtcc 41370673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 44621266 - 44621175
Alignment:
Q  140 ctacttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttgg 229  Q
    ||||||||| ||| ||||| |||||||||| ||   |||| |||| ||||||||  ||||||||| |||| |||||||||||||||||||||    
T  44621266 ctacttgtatcgccgttgctgctttctgcgaaaacggaccggctgtctcggtcgtacccttcgtcaaaccagggctctgataccactgttgg 44621175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3244576 - 3244638
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatc 64  Q
    |||||||||| ||||||||||||||||||||| | |||||||| |||| ||| |||||||||||    
T  3244576 atccgatgtgagacatataactcacacttgcaca-caacactctcccttaagcgtgagtccatc 3244638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41370388 - 41370349
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  41370388 atccgatttgggacatataactcacacttgcaaaccaaca 41370349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 50788108 - 50788147
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  50788108 atccgatgtgggacatataacttacacttgcaaaccaaca 50788147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 55933249 - 55933288
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  55933249 atccgatgtaggacatataactcacacttgcaaaccaaca 55933288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 49880186 - 49880152
Alignment:
Q  6 atgtgggacatataactcacacttgcaaaccaaca 40  Q
    |||||||||||||||||||||||||||||||||||    
T  49880186 atgtgggacatataactcacacttgcaaaccaaca 49880152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22028086 - 22028150
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccat 63  Q
    |||||||||||||||||||| ||||||||||| ||  |||||| || ||| ||||||||||||||    
T  22028086 atccgatgtgggacatataagtcacacttgcacacaacaacacccctccttaagtgtgagtccat 22028150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 39404425 - 39404334
Alignment:
Q  5 gatgtgggacatataactcacacttg--caaaccaacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagct 95  Q
    ||||||||||||||||||||||||||  || | ||||||||| |||||||||| ||||||||| || | ||||||| || |  ||||||||||    
T  39404425 gatgtgggacatataactcacacttgtacacaacaacactcctcctcaagtgt-agtccatcaattcatcgtgctctccctcaagcggaagct 39404334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 50630880 - 50630921
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacact 42  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  50630880 atccgatgtaggacatataactcacgcttgcaaaccaacact 50630921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 23817569 - 23817659
Alignment:
Q  140 ctacttgtaccgctgttgcggctttctgcgcaa--tgaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttgg 229  Q
    ||||||||||||  ||||| |||||||||||||   |||| ||||||||| |||  ||||||||||||  |||||| |||||||||||||||    
T  23817569 ctacttgtaccgtcgttgctgctttctgcgcaaacagaccggctgcctcgatcgtacccttcgtcgaa-tggggctatgataccactgttgg 23817659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 2740731 - 2740700
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  2740731 atccgatgtgggacatataactcacacttgca 2740700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 18933103 - 18933134
Alignment:
Q  9 tgggacatataactcacacttgcaaaccaaca 40  Q
    ||||||||||||||||||||||||||||||||    
T  18933103 tgggacatataactcacacttgcaaaccaaca 18933134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 45489456 - 45489522
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactcccc-ctcaagtgtgagtccatc 64  Q
    |||||||||| ||||||||| ||||||||| | ||  ||||||||||| ||||||||||||||||||    
T  45489456 atccgatgtgagacatataattcacacttgtacacaacaacactcccccctcaagtgtgagtccatc 45489522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 52884726 - 52884695
Alignment:
Q  1 atccgatgtgggacatataactcacacttgca 32  Q
    ||||||||||||||||||||||||||||||||    
T  52884726 atccgatgtgggacatataactcacacttgca 52884695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 16888941 - 16888971
Alignment:
Q  1 atccgatgtgggacatataactcacacttgc 31  Q
    |||||||||||||||||||||||||||||||    
T  16888941 atccgatgtgggacatataactcacacttgc 16888971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 50002457 - 50002423
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  50002457 atccgatgtgagacatataactcacacttgcaaac 50002423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34646774 - 34646803
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  34646774 atccgatgtgggacatataactcacacttg 34646803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 41707589 - 41707618
Alignment:
Q  1 atccgatgtgggacatataactcacacttg 30  Q
    ||||||||||||||||||||||||||||||    
T  41707589 atccgatgtgggacatataactcacacttg 41707618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 19895506 - 19895470
Alignment:
Q  194 cccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||||  ||||||||||||||||||||    
T  19895506 cccttcgtcgaaccgaagctctgataccactgttggg 19895470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 54108944 - 54108888
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtc 60  Q
    |||||||||||||||||  ||| ||||||||| || |||||||||||| |||||||||||    
T  54108944 atccgatgtgggacata--actgacacttgcacac-aacactcccccttaagtgtgagtc 54108888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 5808 - 5689
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatcactttaacgtgctccccttagagcggaagctttt 98  Q
    |||||||||| ||||||||||||||||||||| ||  |||||||||||||||||||||||||||||| || | | |||||||| |  |||||||||| ||    
T  5808 atccgatgtgcgacatataactcacacttgcacacaacaacactccccctcaagtgtgagtccatcaattcatcttgctccccctcaagcggaagctctt 5709  T
Q  99 gactttgcctgtatcgccgtt 119  Q
     ||||||| ||| ||||||||    
T  5708 -actttgcatgtgtcgccgtt 5689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3112 - 3178
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatca 65  Q
    ||||||||||||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||||    
T  3112 atccgatgtgggacatataactcacacctgcacacaacaacactccccctcaagtgtgagtccatca 3178  T

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Target: scaffold0391; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 1380 - 1465
Alignment:
Q  140 ctacttgtaccgctgttgcggctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccac 223  Q
    ||||||||||||| ||||| ||||||||| |||   |||| ||||||||||||   ||||||||||||||||||||||||||||||    
T  1380 ctacttgtaccgccgttgctgctttctgcacaaacggaccggctgcctcggtcatacccttcgtcgaaccggggctctgataccac 1465  T

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Target: scaffold0391; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1233 - 1298
Alignment:
Q  1 atccgatgtgggacatataactcacacttg--caaaccaacactccccctcaagtgtgagtccatc 64  Q
    |||| |||||||||||||||||||||||||  || | ||||| |||||||||||||||||||||||    
T  1233 atccaatgtgggacatataactcacacttgtacacaacaacattccccctcaagtgtgagtccatc 1298  T

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Target: scaffold0391; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 1595 - 1666
Alignment:
Q  160 gctttctgcgcaat--gaccagctgcctcggtcgctcccttcgtcgaaccggggctctgataccactgttggg 230  Q
    |||||||||||||   |||||||||||||||| |  ||||| ||||||| | |||||||||||||||||||||    
T  1595 gctttctgcgcaaacggaccagctgcctcggttgtaccctttgtcgaac-gaggctctgataccactgttggg 1666  T

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Target: scaffold0171 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 17587 - 17648
Alignment:
Q  5 gatgtgggacatataactcacacttgcaaac--caacactccccctcaagtgtgagtccatc 64  Q
    |||||| ||||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  17587 gatgtgtgacatataactcacacttgcacacaacaacactccccctcaagtgtgagtccatc 17648  T

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Target: scaffold0113 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39869 - 39805
Alignment:
Q  1 atccgatgtgggacatataactcacacttgcaaaccaacactccccctcaagtgtgagtccatca 65  Q
    |||||||||||||||||||||||||||||| | || |  | |||||||||||||||||| |||||    
T  39869 atccgatgtgggacatataactcacacttgaacacaacaattccccctcaagtgtgagttcatca 39805  T

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Target: scaffold0113; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 39665 - 39629
Alignment:
Q  194 cccttcgtcgaaccggggctctgataccactgttggg 230  Q
    ||||||||||||||  |||||||||||||||||||||    
T  39665 cccttcgtcgaacctcggctctgataccactgttggg 39629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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