View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17135_high_2 (Length: 641)

Name: NF17135_high_2
Description: NF17135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17135_high_2
NF17135_high_2
[»] chr3 (19 HSPs)
chr3 (1-566)||(5004400-5004970)
chr3 (1-567)||(46404281-46404814)
chr3 (194-576)||(16975243-16975616)
chr3 (1-217)||(16975629-16975846)
chr3 (1-136)||(7336374-7336509)
chr3 (463-566)||(16475278-16475381)
chr3 (361-568)||(11967936-11968131)
chr3 (4-137)||(43277729-43277858)
chr3 (58-225)||(11937566-11937735)
chr3 (68-185)||(9104522-9104640)
chr3 (198-286)||(11937744-11937832)
chr3 (524-579)||(7337291-7337346)
chr3 (413-566)||(9104174-9104325)
chr3 (462-555)||(17542813-17542904)
chr3 (16-58)||(43277702-43277744)
chr3 (58-109)||(17542393-17542444)
chr3 (140-203)||(17542446-17542508)
chr3 (64-176)||(8731156-8731269)
chr3 (64-176)||(9083043-9083156)
[»] chr7 (26 HSPs)
chr7 (2-565)||(15873656-15874186)
chr7 (366-625)||(22077574-22077831)
chr7 (194-557)||(21491358-21491739)
chr7 (1-136)||(10288471-10288606)
chr7 (4-136)||(40106201-40106333)
chr7 (194-567)||(18367192-18367577)
chr7 (68-225)||(22077977-22078135)
chr7 (6-185)||(11036031-11036210)
chr7 (363-566)||(48576332-48576533)
chr7 (16-210)||(12911388-12911581)
chr7 (16-136)||(12196391-12196511)
chr7 (68-225)||(21491194-21491353)
chr7 (43-132)||(49170023-49170114)
chr7 (426-566)||(9993291-9993431)
chr7 (439-576)||(48654353-48654488)
chr7 (70-211)||(18367030-18367173)
chr7 (16-81)||(40106294-40106360)
chr7 (479-572)||(12196729-12196822)
chr7 (524-579)||(10289388-10289443)
chr7 (106-185)||(9993633-9993712)
chr7 (58-110)||(48653534-48653586)
chr7 (159-210)||(12196497-12196548)
chr7 (68-134)||(9993756-9993822)
chr7 (525-563)||(11036685-11036723)
chr7 (529-566)||(7503909-7503946)
chr7 (156-209)||(48653595-48653648)
[»] chr6 (17 HSPs)
chr6 (1-565)||(34636188-34636713)
chr6 (1-393)||(10751240-10751637)
chr6 (234-567)||(23260483-23260829)
chr6 (201-566)||(32450134-32450512)
chr6 (292-566)||(25005144-25005424)
chr6 (1-195)||(23260294-23260489)
chr6 (58-225)||(32449954-32450122)
chr6 (92-202)||(26182412-26182522)
chr6 (466-565)||(26182602-26182700)
chr6 (462-579)||(13777247-13777362)
chr6 (514-577)||(10751623-10751686)
chr6 (550-622)||(194635-194707)
chr6 (491-566)||(11166587-11166662)
chr6 (401-565)||(24992418-24992578)
chr6 (59-110)||(13773121-13773172)
chr6 (93-173)||(20555629-20555709)
chr6 (63-129)||(24163327-24163395)
[»] chr1 (28 HSPs)
chr1 (1-409)||(37666858-37667271)
chr1 (198-567)||(35761918-35762303)
chr1 (431-625)||(37667265-37667458)
chr1 (362-564)||(9537402-9537602)
chr1 (1-136)||(43407047-43407182)
chr1 (1-136)||(338499-338634)
chr1 (1-136)||(8421953-8422088)
chr1 (58-225)||(35761741-35761909)
chr1 (4-136)||(9537070-9537206)
chr1 (490-625)||(338001-338135)
chr1 (399-566)||(16074710-16074879)
chr1 (4-120)||(33007334-33007450)
chr1 (58-225)||(19198451-19198622)
chr1 (16-172)||(16075097-16075252)
chr1 (444-579)||(21264718-21264853)
chr1 (21-136)||(25921879-25921992)
chr1 (524-625)||(43407964-43408066)
chr1 (462-565)||(6835953-6836056)
chr1 (3-72)||(9537030-9537099)
chr1 (16-69)||(33007307-33007360)
chr1 (58-109)||(6836394-6836445)
chr1 (68-110)||(18472635-18472677)
chr1 (16-72)||(9537004-9537060)
chr1 (61-129)||(28561815-28561885)
chr1 (119-176)||(6836253-6836310)
chr1 (479-566)||(8421574-8421660)
chr1 (491-582)||(24275554-24275645)
chr1 (156-210)||(16075096-16075150)
[»] scaffold0413 (1 HSPs)
scaffold0413 (114-568)||(8838-9281)
[»] chr5 (18 HSPs)
chr5 (1-485)||(536895-537346)
chr5 (58-570)||(4557694-4558226)
chr5 (405-565)||(536731-536891)
chr5 (1-136)||(40691266-40691401)
chr5 (16-210)||(30910117-30910309)
chr5 (4-210)||(38001301-38001503)
chr5 (479-566)||(27026621-27026708)
chr5 (58-110)||(25101617-25101669)
chr5 (58-110)||(25160710-25160762)
chr5 (16-68)||(38001478-38001530)
chr5 (58-109)||(6309186-6309237)
chr5 (140-209)||(6309116-6309184)
chr5 (16-75)||(27026847-27026905)
chr5 (73-110)||(42861832-42861869)
chr5 (19-81)||(6309107-6309166)
chr5 (479-564)||(6308625-6308710)
chr5 (158-207)||(25101724-25101773)
chr5 (158-207)||(25160817-25160866)
[»] chr4 (18 HSPs)
chr4 (361-566)||(28969228-28969431)
chr4 (194-533)||(49499045-49499398)
chr4 (1-186)||(40459293-40459477)
chr4 (4-136)||(55162545-55162676)
chr4 (58-225)||(49499403-49499572)
chr4 (1-136)||(28968919-28969059)
chr4 (4-129)||(13652932-13653058)
chr4 (4-129)||(13661057-13661183)
chr4 (1-81)||(55162638-55162718)
chr4 (462-599)||(69218-69352)
chr4 (479-625)||(40458846-40458992)
chr4 (62-110)||(2761801-2761849)
chr4 (58-109)||(69782-69833)
chr4 (119-176)||(69635-69692)
chr4 (140-209)||(69712-69780)
chr4 (19-81)||(69703-69762)
chr4 (27-69)||(13653032-13653074)
chr4 (27-69)||(13661157-13661199)
[»] chr2 (24 HSPs)
chr2 (415-568)||(32735391-32735544)
chr2 (1-136)||(40447872-40448007)
chr2 (23-210)||(18292396-18292582)
chr2 (1-136)||(40729107-40729242)
chr2 (4-136)||(41339936-41340068)
chr2 (16-173)||(28266807-28266964)
chr2 (16-136)||(34397514-34397632)
chr2 (490-625)||(40447374-40447508)
chr2 (399-568)||(1193597-1193765)
chr2 (439-566)||(12774931-12775056)
chr2 (66-173)||(12774137-12774244)
chr2 (439-566)||(28267669-28267793)
chr2 (19-72)||(41339912-41339965)
chr2 (58-109)||(44789002-44789053)
chr2 (373-499)||(29270702-29270827)
chr2 (71-110)||(35670502-35670541)
chr2 (92-176)||(29270994-29271078)
chr2 (491-566)||(23828298-23828373)
chr2 (156-210)||(36731989-36732043)
chr2 (156-209)||(12774190-12774243)
chr2 (68-129)||(36731900-36731961)
chr2 (462-550)||(44788531-44788617)
chr2 (19-79)||(44788925-44788982)
chr2 (140-209)||(44788932-44789000)
[»] scaffold1838 (3 HSPs)
scaffold1838 (361-521)||(221-379)
scaffold1838 (4-136)||(577-709)
scaffold1838 (16-81)||(670-736)
[»] chr8 (12 HSPs)
chr8 (23-135)||(41958124-41958236)
chr8 (57-136)||(44436513-44436592)
chr8 (59-165)||(40841215-40841322)
chr8 (444-579)||(22816469-22816602)
chr8 (399-499)||(35839168-35839268)
chr8 (68-110)||(22635730-22635772)
chr8 (68-109)||(22816023-22816064)
chr8 (479-564)||(40841568-40841652)
chr8 (491-567)||(20264999-20265075)
chr8 (491-567)||(21051628-21051704)
chr8 (70-110)||(3189139-3189179)
chr8 (158-209)||(3189234-3189288)
[»] scaffold0120 (1 HSPs)
scaffold0120 (491-566)||(2645-2720)
[»] scaffold0013 (3 HSPs)
scaffold0013 (462-579)||(243170-243287)
scaffold0013 (58-109)||(242732-242783)
scaffold0013 (119-176)||(242878-242935)
[»] scaffold0002 (1 HSPs)
scaffold0002 (491-566)||(356884-356959)
[»] scaffold0041 (1 HSPs)
scaffold0041 (19-108)||(32991-33078)


Alignment Details
Target: chr3 (Bit Score: 503; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Original strand, 5004400 - 5004970
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004400 agaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 5004499  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5004500 catgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgcc 5004599  T
Q  201 actaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatcttcatttat 300  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  5004600 actaaggcaaactcatagacaaatacagtaagatattaacacatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattttcatttat 5004699  T
Q  301 ttagtttatcagcaaagtctaacacttctttacaataccacagaaacatgtatgaataga-----aaaataaatgtcattccacataacattatcataca 395  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||     |||||||||||||||||||||||||||||||||||    
T  5004700 ttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcataca 5004799  T
Q  396 aacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaa 495  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  5004800 gacatcatataaaatataattaaactaataacttttataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaaaagacaa 5004899  T
Q  496 gaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004900 gaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 5004970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Original strand, 46404281 - 46404814
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |     
T  46404281 agaaatataattgcaattcccaccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgccatgcacaaa 46404380  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgcc 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||             ||| |||||||||||||||||||||||    
T  46404381 catgaaaatgcacactaaaacccgccactaaggcacaataatgcaatatgatgttatccc-------------cacaaagaaatatattattaacccgcc 46404467  T
Q  201 actaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatcttcatttat 300  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||                 ||||    
T  46404468 acgaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatattttcat-----------------ttat 46404550  T
Q  301 ttagtttatcagcaaagtctaacacttctttacaataccacagaaacatgtatgaatagaaaaataaatgtcattccacataacattatcatacaaacat 400  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    | ||||||||| |||||||||||||| | ||    
T  46404551 ttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaat----gccattccacaaaacattatcatacagatat 46404646  T
Q  401 catataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatc 500  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46404647 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatc 46404746  T
Q  501 tctacctctaattcataacataatcctagtacttagtaagaacgtatgggg-aaaaagcccttacctc 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46404747 tctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaaagcccttacctc 46404814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 194 - 576
Target Start/End: Complemental strand, 16975616 - 16975243
Alignment:
Q  194 acccgccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatct- 292  Q
    ||||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| |     
T  16975616 acccgccactaaggcaaactcataggcaaatatagtcacatattaacacatcatcatccacatgaaccaaactgaaatattttcataaaactcatatttc 16975517  T
Q  293 -------tcatttatttagtttatcagcaaagtctaacacttcttta-caataccacagaaacatgtatgaatagaaaaataaatgtcattccacataac 384  Q
           |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||                   | ||||||||||||||     
T  16975516 tatattttcatttatttagtttatcagcaaagtctaacacttctttaacaataccacaaaaaca-------------------acgtcattccacataaa 16975436  T
Q  385 attatcatacaaacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttt 484  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16975435 attatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttt 16975336  T
Q  485 tcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtat-ggggaaaaagcccttacctcgtaagcttt 576  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||||    
T  16975335 tcaacaaacaagaatctctacctctaattcataacataatcctagtacttattaagaatgtatggggggaaaagcccttacctcgtaagcttt 16975243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 16975846 - 16975629
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  16975846 agaaatataattgcaattcccgccactaaggcatccacacagaatataattgcaattcccgccactatggcaccacacagatgcatatgccatggatgat 16975747  T
Q  101 catgaaaatgcagactaaaa-cccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgc 199  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16975746 catgaaaatgcagactaaaaccccgccacttaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgc 16975647  T
Q  200 cactaaggcaaactcata 217  Q
    ||||||||||||| ||||    
T  16975646 cactaaggcaaacgcata 16975629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 7336374 - 7336509
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7336374 agaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 7336473  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcac 136  Q
    |||||||||||| |||||||||||||||||||||||    
T  7336474 catgaaaatgcaaactaaaacccgccactaaggcac 7336509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 463 - 566
Target Start/End: Complemental strand, 16475381 - 16475278
Alignment:
Q  463 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccctt 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||    
T  16475381 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactctt 16475282  T
Q  563 acct 566  Q
    ||||    
T  16475281 acct 16475278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 361 - 568
Target Start/End: Original strand, 11967936 - 11968131
Alignment:
Q  361 aaaataaatgtcattccacataacattatcatacaaacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaatt 460  Q
    |||||||||||||||| ||  |||||| | ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11967936 aaaataaatgtcattctacggaacatttt-atacacacatcgtataaaatataattaaactaataacttttataaaaggttaaattttaccatataaatt 11968034  T
Q  461 catattttagttgttttg--ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagc 558  Q
    |||||||||| | |||||  |||||||||      |||||||||||||      ||||||||| |||||||||||||||| | |||||| |||||||| |    
T  11968035 catattttagattttttgtcttcttttca------aagaatctctacc------tcataacatcatcctagtacttagtatggacgtat-gggaaaaaac 11968121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 43277729 - 43277858
Alignment:
Q  4 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 103  Q
    ||||||||||| |||| || || ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  43277729 aatataattgcaattcgcgtcattaaggtatccacacagaatataattgcaattcccgccactaaggcaccacacagatgcatatgtcatgtatgatcat 43277828  T
Q  104 gaaaatgcagactaaaacccgccactaaggcaca 137  Q
    ||||||    ||||||||||||||||||| ||||    
T  43277829 gaaaat----actaaaacccgccactaagacaca 43277858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 11937566 - 11937735
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaa-aatgcagactaaaacccgccactaaggcacaataatgcaatatgatgtt 155  Q
    ||||||||  |||||||||||| |||||||||| | ||||||||||| || |||| | |||||| ||  ||||| |||||||| ||||||||||||| ||    
T  11937566 cccgccacacaggcaccacacaaatgcatatgctaatgcatgatcataaacaatgaaaactaaatccaaccacttaggcacaacaatgcaatatgatatt 11937665  T
Q  156 atcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 225  Q
    |||||||||||||||||||||  ||||||||||||| |||| ||||||||||||||  ||||| ||||||    
T  11937666 atcccgccactaaggcaccacacagaaatatattatgaacctgccactaaggcaaatgcatagtcaaata 11937735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 9104640 - 9104522
Alignment:
Q  68 aggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccact 166  Q
    ||||||||||||||||||||||| | |||||||||||||||||| |||||||| | ||||||| |||||||| || |||||||||| ||  || |||||     
T  9104640 aggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcacgccacttaggcacaacaaagcaatatgatatttacctgccaca 9104541  T
Q  167 aaggcaccaccaagaaata 185  Q
    ||||||||||  |||||||    
T  9104540 aaggcaccacacagaaata 9104522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 11937744 - 11937832
Alignment:
Q  198 gccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactc 286  Q
    ||||||||||||| ||||||  |||| ||| |||  |||||||| ||||||||||||||| |||||| | |||||||||||||||||||    
T  11937744 gccactaaggcaacctcataagcaaacacaatcatgtattaacacatcatcatccacatgaaccaaaataaaatattttcataaaactc 11937832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 524 - 579
Target Start/End: Original strand, 7337291 - 7337346
Alignment:
Q  524 tcctagtacttagtaagaacgtatggggaaaaagcccttacctcgtaagctttcct 579  Q
    |||||| |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  7337291 tcctagcacttagtatggacgtatggggaaaaagcccttacctcgtaagctttcct 7337346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 413 - 566
Target Start/End: Complemental strand, 9104325 - 9104174
Alignment:
Q  413 aattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaat 512  Q
    ||||||| |||| | ||||||||||  ||| ||||||||| || ||   |||||||  |||||||  ||||||||| ||||||||||  ||||| ||| |    
T  9104325 aattaaaataatcaatcttataaaatattagattttaccacattaagaaatatttttattgtttt--tcttttcaaaagacaagaattgctaccactatt 9104228  T
Q  513 tcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    | |||||| | |||||  ||||||||| |||||||||||||||| |||||||||    
T  9104227 taataacacagtcctaacacttagtaaaaacgtatggggaaaaaacccttacct 9104174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 462 - 555
Target Start/End: Original strand, 17542813 - 17542904
Alignment:
Q  462 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaa 555  Q
    |||||||| |||||||  ||||||||| ||||||||||  ||||| ||| || |||||| | |||||  |||||||||||||||||||||||||    
T  17542813 atattttaattgtttt--tcttttcaagagacaagaattgctaccactatttaataacacagtcctaaaacttagtaagaacgtatggggaaaa 17542904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 43277702 - 43277744
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattc 58  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  43277702 attcctgccactaaggcatccacacagaatataattgcaattc 43277744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 17542393 - 17542444
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaat 109  Q
    ||||||||  ||||||||||||||| ||||||| ||||||||||| ||||||    
T  17542393 cccgccacacaggcaccacacagatacatatgcgatgcatgatcacgaaaat 17542444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 17542446 - 17542508
Alignment:
Q  140 aatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccact 203  Q
    ||||||||||||| ||| |||||||||||||||||||  || |||||| || ||||||||||||    
T  17542446 aatgcaatatgatattaacccgccactaaggcaccacacag-aatataatagtaacccgccact 17542508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 8731269 - 8731156
Alignment:
Q  64 actaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgc 162  Q
    |||||||||||||| |||||  ||||| | |||||||||||||||||| ||||||||  || ||||| |  ||  | || ||||||||||  || |||||    
T  8731269 actaaggcaccacatagatgtttatgctaatgcatgatcatgaaaatgaagactaaattccaccacttacacatcacaaagcaatatgatactaacccgc 8731170  T
Q  163 cactaaggcaccac 176  Q
    | ||||||||||||    
T  8731169 ccctaaggcaccac 8731156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 9083156 - 9083043
Alignment:
Q  64 actaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgc 162  Q
    |||||||||||||| |||||  ||||| | |||||||||||||||||| ||||||||  || ||||| |  ||  | || ||||||||||  || |||||    
T  9083156 actaaggcaccacatagatgtttatgctaatgcatgatcatgaaaatgaagactaaattccaccacttacacatcacaaagcaatatgatactaacccgc 9083057  T
Q  163 cactaaggcaccac 176  Q
    | ||||||||||||    
T  9083056 ccctaaggcaccac 9083043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 2 - 565
Target Start/End: Original strand, 15873656 - 15874186
Alignment:
Q  2 gaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatc 101  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |    
T  15873656 gaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgccatgcacgaac 15873755  T
Q  102 atgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgcca 201  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||             ||| ||||||||||||||||||||||||    
T  15873756 atgaaaatgcacactaaaacccgccactaaggcacaataatgcaatatgatgttatccc-------------cacaaagaaatatattattaacccgcca 15873842  T
Q  202 ctaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatcttcatttatt 301  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||                 |||||    
T  15873843 cgaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatattttcat-----------------ttatt 15873925  T
Q  302 tagtttatcagcaaagtctaacacttctttacaataccacagaaacatgtatgaatagaaaaataaatgtcattccacataacattatcatacaaacatc 401  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||   ||| ||||||||| |||||||||||||| | |||    
T  15873926 tagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa---atgccattccacaaaacattatcatacagatatc 15874022  T
Q  402 atataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatct 501  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  15874023 atataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacatacaagaatct 15874122  T
Q  502 ctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874123 ctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 15874186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 366 - 625
Target Start/End: Complemental strand, 22077831 - 22077574
Alignment:
Q  366 aaatgtcattccacataacattatcatacaaacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatat 465  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||  ||| ||||||||||||||||||||||| ||||    
T  22077831 aaatgtcattctacataacattatcatacacacatcatataaaatataattaaactaataactttttgaaatggttaaattttaccatataaatttatat 22077732  T
Q  466 tttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 565  Q
    ||||||||||||  |||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||    
T  22077731 tttagttgtttt--tcttcttaacagacaagaatctctacctctaattcataacatcatcctagtacttagtatgaacatatgggaaaaaagcccttacc 22077634  T
Q  566 tcgtaagctttcctcccaatcaaacgactacaaggttctctaaattagcaggttcaaagc 625  Q
    || ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  22077633 tcataagctttcctcccaatcaaacgactacaaggtcctctaaatttgcaggttcaaagc 22077574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 194 - 557
Target Start/End: Original strand, 21491358 - 21491739
Alignment:
Q  194 acccgccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatc-- 291  Q
    ||||||||||||||||| ||||||  |||| ||| | ||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||| |||       
T  21491358 acccgccactaaggcaacctcataagcaaacacaataagatattaacacatcatcatccacatgaaccaaaatgaaatattttcataaaactcatattac 21491457  T
Q  292 ------ttcatttatttagtttatcagcaaagtctaacacttctttac-aataccacagaaa---catgtatgaatagaaaaataaa-----tgtcattc 376  Q
          ||||||| |||||||||||| |||| || ||||||||||| | ||||||||| |||   ||| |||| |||  ||||||||     ||||||||    
T  21491458 tatattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaaaacatatatgcatatcaaaataaaataaatgtcattc 21491557  T
Q  377 cacataacattatcatacaaacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttt 476  Q
     |||||||||| | || || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  21491558 tacataacatttt-atgcacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagtttttt 21491656  T
Q  477 tg--ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaag 557  Q
    ||  ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| ||||||    
T  21491657 tgtcttcttttcaaccgacaagaatctctacctctaattcataacatcatcctagtacttagtatggacgtatgggaaaaaag 21491739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 10288471 - 10288606
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10288471 agaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 10288570  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcac 136  Q
    |||||||||||| |||||||||||||||||||||||    
T  10288571 catgaaaatgcaaactaaaacccgccactaaggcac 10288606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 40106333 - 40106201
Alignment:
Q  4 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 103  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40106333 aatataattgcaattcctgccactaaggcatccacacagaatataattgcgattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 40106234  T
Q  104 gaaaatgcagactaaaacccgccactaaggcac 136  Q
    ||||||||||||||||| |||||||||||||||    
T  40106233 gaaaatgcagactaaaatccgccactaaggcac 40106201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 194 - 567
Target Start/End: Original strand, 18367192 - 18367577
Alignment:
Q  194 acccgccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatct- 292  Q
    ||||||||||||||||| ||||||  |||| ||| |||| |||||||| ||||||||||| ||| |||||| ||||||||||| ||||| ||| ||| |     
T  18367192 acccgccactaaggcaacctcataaccaaacacaatcaggtattaacacatcatcatccatatgaaccaaaatgaaatatttttataaatctcatatttc 18367291  T
Q  293 -------tcatttatttagtttatcagcaaagtctaacacttctttac-aataccacagaaa--catgtatgaatagaaaaataaa-----tgtcattcc 377  Q
           |||||| |||||||||||| |||| || ||||||||||| | ||||||||| |||  ||| |||| |||  ||||||||     ||||||||     
T  18367292 tatattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaaacatatatgcatatcaaaataaaataaatgtcattct 18367391  T
Q  378 acataacattatcatacaaacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagtt--gtt 475  Q
    || ||||||| | ||| ||        |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  |||    
T  18367392 acgtaacattttaatataat-------taaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttaatttggtt 18367484  T
Q  476 tt-gttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 567  Q
    ||  |||||||||||| |||||||||||||||| |||||||||||||  ||||||| |||| || | |||||| |||||||||||||||||||    
T  18367485 ttctttcttttcaacaaacaagaatctctacctttaattcataacatcgtcctagttcttattatggacgtatagggaaaaagcccttacctc 18367577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 22078135 - 22077977
Alignment:
Q  68 aggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccact 166  Q
    ||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||| |||||||| |||||||||||||||||||||||||||    
T  22078135 aggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcccgccacttaggcacaacaatgcaatatgatgttatcccgccact 22078036  T
Q  167 aaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 225  Q
    |||||||||| |||| |||||||||||||||||||||||||||||  ||||| ||||||    
T  22078035 aaggcaccacaaagagatatattattaacccgccactaaggcaaatgcatagtcaaata 22077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 6 - 185
Target Start/End: Original strand, 11036031 - 11036210
Alignment:
Q  6 tataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgc-catgcatgatcatg 104  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  11036031 tataattgcaattcccgccactaaggcatccacacagaatataattgcaattcccgccactaaggcaccacagagatgcatatgctaatgcatgatcatg 11036130  T
Q  105 aaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaata 185  Q
    |||||| |||||||| ||||||||| |||||||| ||||||||||||| ||  | |||||| ||||||||||  |||||||    
T  11036131 aaaatgaagactaaatcccgccacttaggcacaacaatgcaatatgatatttactcgccac-aaggcaccacacagaaata 11036210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 363 - 566
Target Start/End: Complemental strand, 48576533 - 48576332
Alignment:
Q  363 aataaatgtcattccacataacattatcatacaaacatcatataaaatataattaaa-ctaataactcttataaaaggttaaattttaccatataaattc 461  Q
    ||||||||||||||  ||| ||||||||||||| ||||||||||| ||||||||||| ||||||||| | |||| |  ||||||||||||||||||||||    
T  48576533 aataaatgtcattctgcatcacattatcatacacacatcatataatatataattaaaactaataactttaataagatattaaattttaccatataaattc 48576434  T
Q  462 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 561  Q
    |||||||| || ||||   ||||| ||| || |||||||||||||||||||||||||||| |||| ||||||||||| | ||||||||||||||||||||    
T  48576433 atattttaattatttt---ctttttaacggataagaatctctacctctaattcataacattatcccagtacttagtatggacgtatggggaaaaagccct 48576337  T
Q  562 tacct 566  Q
    |||||    
T  48576336 tacct 48576332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 12911388 - 12911581
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagac 115  Q
    |||||||| |||||| |||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  12911388 attcccgctactaagacatccacacagaatataattgcaattcctaccactaaggcaccacacagatgcatatgccatacatgattatgaaaatgcagac 12911487  T
Q  116 taaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaa 210  Q
    |||||||||||||||||| || | |  | ||||| ||  || ||||||||| ||||||||| |||||||||  |||||||| | |||||||||||    
T  12911488 taaaacccgccactaaggtaccacacag-aatataattataacccgccacttaggcaccactaagaaatatgatattaacctgtcactaaggcaa 12911581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 12196391 - 12196511
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagac 115  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  12196391 attcccgtcactaaggcatccacacagaatataattgcaattcccgccactaaggcaccacacagatgaatatgccatgtatgatcatgaaaatgcagac 12196490  T
Q  116 taaaacccgccactaaggcac 136  Q
    ||||  |||||||||||||||    
T  12196491 taaagtccgccactaaggcac 12196511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 68 - 225
Target Start/End: Original strand, 21491194 - 21491353
Alignment:
Q  68 aggcaccacacagatgcatatgcca-tgcatgatcatgaa-aatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccac 165  Q
    ||||||||||||||||||||||| | |||||||||||||| |||| |||||||| || |||||| |||||||| ||||||||||||| || |||||||||    
T  21491194 aggcaccacacagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaacaatgcaatatgatattctcccgccac 21491293  T
Q  166 taaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 225  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||  ||||| ||||||    
T  21491294 taaggcaccacacagaaatatattattaacccaccactaaggcaaatgcatagtcaaata 21491353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 49170023 - 49170114
Alignment:
Q  43 aatataattgcaattcccg-ccactaaggca-ccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaag 132  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49170023 aatataattgcaattcccggccactaaggcatccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaatccgccactaag 49170114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 426 - 566
Target Start/End: Complemental strand, 9993431 - 9993291
Alignment:
Q  426 actcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatc 525  Q
    ||||||||||||  ||| ||||||||||||||||  |||||||| ||||||| |||||||||| ||||||||||   |||| ||| || |||||| |  |    
T  9993431 actcttataaaatattagattttaccatataaataaatattttaattgttttcttcttttcaaaagacaagaattgttacccctatttaataacaaagcc 9993332  T
Q  526 ctagtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  9993331 ctagcacttagtaagaacgtgtggggaaaaagcccttacct 9993291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 439 - 576
Target Start/End: Original strand, 48654353 - 48654488
Alignment:
Q  439 gttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagta 538  Q
    ||||||| ||||||  |||||  ||||||||||||||||  ||||| ||| |||||||||| | ||| ||||||||| ||||| ||||||||||||||||    
T  48654353 gttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttagta 48654450  T
Q  539 agaacgtatggggaaaaagcccttacctcgtaagcttt 576  Q
     | ||||||||||||||| ||||||||||| |||||||    
T  48654451 tggacgtatggggaaaaaacccttacctcgaaagcttt 48654488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 70 - 211
Target Start/End: Original strand, 18367030 - 18367173
Alignment:
Q  70 gcaccacacagatgcatatgcca-tgcatgatcatgaa-aatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccacta 167  Q
    |||||||||| || ||||||| | ||| |||||||||| |||| ||| |||| || |||||| ||| |||| ||||||||||||| |||||| |||||||    
T  18367030 gcaccacacaaatacatatgctaatgcgtgatcatgaacaatgaagattaaatccagccacttagggacaacaatgcaatatgatattatcctgccacta 18367129  T
Q  168 aggcaccaccaagaaatatattattaacccgccactaaggcaaa 211  Q
    |||||||||  |||||| ||||||||||||||| ||||| ||||    
T  18367130 aggcaccacacagaaatctattattaacccgcccctaagacaaa 18367173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 40106360 - 40106294
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggca-ccacacaga 81  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  40106360 attcccgccactaaggcttccacacagaatataattgcaattcctgccactaaggcatccacacaga 40106294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 479 - 572
Target Start/End: Original strand, 12196729 - 12196822
Alignment:
Q  479 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcgtaag 572  Q
    ||||||| || ||||||||||  ||||| ||| || |||||||| |||| | |||||||||||| ||||||||||||||||||||||| |||||    
T  12196729 ttctttttaaaagacaagaattgctaccactatttaataacatagtccttgcacttagtaagaatgtatggggaaaaagcccttaccttgtaag 12196822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 524 - 579
Target Start/End: Original strand, 10289388 - 10289443
Alignment:
Q  524 tcctagtacttagtaagaacgtatggggaaaaagcccttacctcgtaagctttcct 579  Q
    |||||| |||||||| | ||||||||||||||||||||||||||||||||||||||    
T  10289388 tcctagcacttagtatggacgtatggggaaaaagcccttacctcgtaagctttcct 10289443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 9993712 - 9993633
Alignment:
Q  106 aaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaata 185  Q
    ||||||| |||||| ||||||||| |||||||| ||||||||||||| ||  ||| |||| ||||||||||  |||||||    
T  9993712 aaatgcaaactaaatcccgccacttaggcacaacaatgcaatatgatatttacccaccacaaaggcaccacacagaaata 9993633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 48653534 - 48653586
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 110  Q
    ||||||||  || |||||||||||||||||||  |||||||||||||||||||    
T  48653534 cccgccacacagacaccacacagatgcatatgttatgcatgatcatgaaaatg 48653586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 12196497 - 12196548
Alignment:
Q  159 ccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaa 210  Q
    ||||||||||||||||||  ||| ||||| ||||||||| ||||||||||||    
T  12196497 ccgccactaaggcaccacacagatatataatattaacccaccactaaggcaa 12196548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 9993822 - 9993756
Alignment:
Q  68 aggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaaggc 134  Q
    |||||||||| |  ||||||||||||||||||| |||| |||| | |||||| ||||||||| ||||    
T  9993822 aggcaccacaaacgtgcatatgccatgcatgataatgataatgaaaactaaatcccgccacttaggc 9993756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 563
Target Start/End: Original strand, 11036685 - 11036723
Alignment:
Q  525 cctagtacttagtaagaacgtatggggaaaaagccctta 563  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  11036685 cctagcacttagtaagaacgtgtggggaaaaagccctta 11036723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 566
Target Start/End: Complemental strand, 7503946 - 7503909
Alignment:
Q  529 gtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    |||||||||| | |||||||||||||||||||||||||    
T  7503946 gtacttagtatggacgtatggggaaaaagcccttacct 7503909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 48653595 - 48653648
Alignment:
Q  156 atcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggca 209  Q
    ||||||||||| ||||||||| ||||| ||||   |||||||||||||||||||    
T  48653595 atcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 48653648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 34636713 - 34636188
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||     
T  34636713 agaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgccatgcacgaa 34636614  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgcc 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||             ||| |||||||||||||||||||||||    
T  34636613 catgaaaatgcacactaaaacccgccactaaggcacaataatgcaatatgatgttatccc-------------cacaaagaaatatattattaacccgcc 34636527  T
Q  201 actaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatcttcatttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||                 ||||    
T  34636526 actaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatattttcat-----------------ttat 34636444  T
Q  301 ttagtttatcagcaaagtctaacacttctttacaataccacagaaacatgtatgaatagaaaaataaatgtcattccacataacattatcatacaaacat 400  Q
    |||||||||||||||||||||||||||      ||||||||| |||||| ||||||||||||||   ||||||| |||||||||||||||||||| ||||    
T  34636443 ttagtttatcagcaaagtctaacactt------aataccacaaaaacatatatgaatagaaaaa---atgtcatgccacataacattatcatacagacat 34636353  T
Q  401 catataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatc 500  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34636352 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatc 34636253  T
Q  501 tctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636252 tctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 34636188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 10751240 - 10751637
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10751240 agaaatataattgcaattcctgccactaaggcatccacagagaatataattgtaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 10751339  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  10751340 catgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaaccagcc 10751439  T
Q  201 actaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatcttcatttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  10751440 actaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattttcatttat 10751539  T
Q  301 ttagtttatcagcaaagtctaacacttctttacaataccacagaaacatgtatgaataga-----aaaataaatgtcattccacataacattatcata 393  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||     |||||||||||||||||||||||||||||||||    
T  10751540 ttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcata 10751637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 234 - 567
Target Start/End: Original strand, 23260483 - 23260829
Alignment:
Q  234 tattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatct--------tcatttatttagtttatcagcaaagtctaacac 325  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| |        |||||||||||||||||||||||| ||||||||    
T  23260483 tattaacacatcatcatccacatgaaccaaactgaaatattttcataaaactcatatttctatattttcatttatttagtttatcagcaaa-tctaacac 23260581  T
Q  326 ttcttta-caataccacagaaacatgtatgaatagaaaaa-----taaatgtcattccacataacattatcatacaaacatcatataaaatataattaaa 419  Q
    ||||||| |||||||||| |||||| ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23260582 ttctttaacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacataacattatcatacaaacatcatataaaatataattaaa 23260681  T
Q  420 ctaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataac 519  Q
    ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23260682 ctaataacttttataaaaggctaaattttaccatatgaattcatattttagttgttttgttcttttcaagagacaagaatctctacctctaattcataac 23260781  T
Q  520 ataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 567  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23260782 ataatcctaatacttagtaagaacgtatggggaaaaagcccttacctc 23260829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 201 - 566
Target Start/End: Original strand, 32450134 - 32450512
Alignment:
Q  201 actaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatct-------- 292  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||||||||||| ||| |            
T  32450134 actaagacaaactcataggcaaatacagtcagatattaacacatcatcatgcacatgaaccaaaatgaaatattttcataaaactcatatttctatattt 32450233  T
Q  293 tcatttatttagtttatcagcaaagtctaacacttcttta-caataccacagaaacatgtatgaatagaaaaa-----taaatgtcattccacataacat 386  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| |||| |||||||||     ||||||||||||||||||||||    
T  32450234 tcatttatttagtttatcaacaaagtctaacacttctttaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccacataacat 32450333  T
Q  387 tatcatacaaacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttc 486  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  32450334 tatcatacacacatcatataaaatataattaaactaataacttttataaaaagttaaaatttaccatatgaattcatattttagttgttttgttcttttc 32450433  T
Q  487 aacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||    
T  32450434 aacagacaagaatctctacctctaattcataacacaatcctagtacttagtaagaacgtacgggg-aaaagcccttacct 32450512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 292 - 566
Target Start/End: Complemental strand, 25005424 - 25005144
Alignment:
Q  292 ttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacagaaacatgtatgaatagaaaaataaa-----tgtcattccacataaca 385  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||     ||||||||||||||| |    
T  25005424 ttcatttatttagtttatcagcaaagtctaacacttctttaacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacataaaa 25005325  T
Q  386 ttatcatacaaacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttctttt 485  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  25005324 ttatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcttattttagttgttttgttctttt 25005225  T
Q  486 caacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||    
T  25005224 caacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactcttacct 25005144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 23260294 - 23260489
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23260294 agaaatataattgcaattcccgccactaaggcatccacacaaaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 23260393  T
Q  101 catgaaaatgcagactaaaa-cccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaac 195  Q
    |||||||||||||||||||| |||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| || |||||||||||||||    
T  23260394 catgaaaatgcagactaaaaccccgtcacttaggcacaataatgcaacatgatgttatcctgccactaaggcaccacaaaaaaatatattattaac 23260489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 32449954 - 32450122
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgtta 156  Q
    ||||||||  ||||||||||||||||||||||| | |||||||||||||||||| ||| |||| ||||||||| |||||||| |||||||||||||||||    
T  32449954 cccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagattaaatcccgccacttaggcacaacaatgcaatatgatgtta 32450053  T
Q  157 tcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 225  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  32450054 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaatgcatagtcaaata 32450122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 92 - 202
Target Start/End: Original strand, 26182412 - 26182522
Alignment:
Q  92 atgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattat 191  Q
    ||||||||||||||||||| |||||||| || |||||   ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  26182412 atgcatgatcatgaaaatgaagactaaatcctgccacagtggcacaacaatgcaatatgatattatcccgccactaaggcacgaccaagaaatatattat 26182511  T
Q  192 taacccgccac 202  Q
    |||||||||||    
T  26182512 taacccgccac 26182522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 466 - 565
Target Start/End: Original strand, 26182602 - 26182700
Alignment:
Q  466 tttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 565  Q
    |||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||| |||||| ||||||||| | || |||||||||||||||||||||    
T  26182602 tttagttgtttt-ttcttctcaacatacaagaatctctaactctaattcataacatcatcctaatacttagtatggacatatggggaaaaagcccttacc 26182700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 462 - 579
Target Start/End: Original strand, 13777247 - 13777362
Alignment:
Q  462 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 561  Q
    ||||||||||||||||  ||||| ||| ||| |||||| | ||| ||||||||| ||||| ||||||||| ||| || | ||||| |||||||||| |||    
T  13777247 atattttagttgtttt--tctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtatttattatggacgtacggggaaaaagtcct 13777344  T
Q  562 tacctcgtaagctttcct 579  Q
    ||||||||||||||||||    
T  13777345 tacctcgtaagctttcct 13777362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 514 - 577
Target Start/End: Original strand, 10751623 - 10751686
Alignment:
Q  514 cataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcgtaagctttc 577  Q
    |||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  10751623 cataacattatcatagtacttagtaagaatgtatggggaaaaggcccttacctcgtaagctttc 10751686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 550 - 622
Target Start/End: Complemental strand, 194707 - 194635
Alignment:
Q  550 ggaaaaagcccttacctcgtaagctttcctcccaatcaaacgactacaaggttctctaaattagcaggttcaa 622  Q
    ||||||||| ||||||| ||| ||||||||||||||||||  |||| ||||||||||||||| ||||||||||    
T  194707 ggaaaaagctcttaccttgtacgctttcctcccaatcaaagaactataaggttctctaaattcgcaggttcaa 194635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 491 - 566
Target Start/End: Original strand, 11166587 - 11166662
Alignment:
Q  491 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    ||||| |||||||||| ||| ||||||| |  ||||||  ||||||||||||||||||||||||||||||||||||    
T  11166587 gacaaaaatctctaccactatttcataataagatcctaacacttagtaagaacgtatggggaaaaagcccttacct 11166662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 401 - 565
Target Start/End: Complemental strand, 24992578 - 24992418
Alignment:
Q  401 catataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatc 500  Q
    |||||||||  |||||||| |||| | | |||||||||  ||||||||||||  ||||   |||||||| |||||||  ||||||||| | ||||||||     
T  24992578 catataaaacttaattaaaataatcagttttataaaagaataaattttaccacgtaaagaaatattttaattgtttt--tcttttcaaaa-acaagaatt 24992482  T
Q  501 tctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 565  Q
    ||||| | ||||||||||||||  ||||||||||| ||   || ||| |||||||||||||||||    
T  24992481 tctacttataattcataacatatccctagtacttaatatagacatat-gggaaaaagcccttacc 24992418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 13773121 - 13773172
Alignment:
Q  59 ccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 110  Q
    |||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  13773121 ccgccacacaggcaccacacagatgtatatgctatgcatgatcatgaaaatg 13773172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 20555709 - 20555629
Alignment:
Q  93 tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcac 173  Q
    |||||||| |||| |||| | |||||| ||| ||||  || ||||| ||||||||||||| ||||||||||||||| ||||    
T  20555709 tgcatgataatgataatgaaaactaaatcccaccacatagacacaacaatgcaatatgatattatcccgccactaaagcac 20555629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 24163395 - 24163327
Alignment:
Q  63 cactaaggcaccacacagatgcatatgc-catgcatgatcatg-aaaatgcagactaaaacccgccact 129  Q
    ||||||| |||||||||||| |||||||  |||||| |||||| |||||| |||||||| |||||||||    
T  24163395 cactaagacaccacacagatacatatgctaatgcataatcatgaaaaatgaagactaaatcccgccact 24163327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 37666858 - 37667271
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37666858 agaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgacatgcatgat 37666957  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgcc 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  37666958 catgaaaatgcagactaaaatccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgtc 37667057  T
Q  201 actaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatcttcatttat 300  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  37667058 actaaggcaaactcatagacaaatacagtcagattttaacacatcatcatccacatggaccaaactgaaatattttcataaaactcatattttcatttat 37667157  T
Q  301 ttagtttatcagcaaagtctaacacttctttacaataccacagaaacatgtatgaatagaaaaataaat-----gtcattccacataacattatcataca 395  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||      ||||||||||||||||||||||||||    
T  37667158 ttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaaagtcattccacataacattatcataca 37667257  T
Q  396 aacatcatataaaa 409  Q
     |||||||||||||    
T  37667258 gacatcatataaaa 37667271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 198 - 567
Target Start/End: Original strand, 35761918 - 35762303
Alignment:
Q  198 gccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatct----- 292  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||||| ||||||||||||||||||| | ||| |         
T  35761918 gccactaaggcaaactcataggcaaatacagtcaaatattaacacatcatcatccacatgaaccaaaatgaaatattttcataaaacacatatttctata 35762017  T
Q  293 ---tcatttatttagtttatcagcaaagtctaacacttcttta-caataccacagaaacatgtatgaatagaaaaataaa-----tgtcattccacataa 383  Q
       ||||||||||||||||||  |||||||||||||||| ||| |||||||||| |||||| |||| |||||||||||||     |||||||||||||||    
T  35762018 ttttcatttatttagtttatctacaaagtctaacacttcattaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccacataa 35762117  T
Q  384 cattatcatacaaacatcatataaaatataattaaactaataactctt--ataaaaggttaaattttaccatataaattcatattttagttgttttgttc 481  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35762118 cattatcatacacacatcatataaaatatagttaaactaataacttttttataaaaggttaaattttaccatataaattcatattttagttgttttgttc 35762217  T
Q  482 ttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 567  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  35762218 ttttcaacatacaagaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctc 35762303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 431 - 625
Target Start/End: Original strand, 37667265 - 37667458
Alignment:
Q  431 tataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagt 530  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37667265 tataaaaggttaaattttatcatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctatt 37667364  T
Q  531 acttagtaagaacgtatggggaaaaagcccttacctcgtaagctttcctcccaatcaaacgactacaaggttctctaaattagcaggttcaaagc 625  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||    
T  37667365 acttagtaagaacgtatggggaaaaag-ccttacctcataagctttcctcccaatcaaacaactacaaggtcctctaaatttgcaggttcaaagc 37667458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 362 - 564
Target Start/End: Original strand, 9537402 - 9537602
Alignment:
Q  362 aaataaatgtcattccacataacattatcatacaaacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattc 461  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||     
T  9537402 aaataaatgtcattctacataacattatcatacaaacatcatataaaatataattaaactaataacttttataaaaggttaaattttacaatataaattt 9537501  T
Q  462 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 561  Q
    |||||||| ||||||  ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| | ||||||| || |||||||||    
T  9537502 atattttacttgttt--ttcttctcaacagacaagaatctatacctctaattcataacatcatcctagtactcagtatggacgtatgaggtaaaagccct 9537599  T
Q  562 tac 564  Q
    |||    
T  9537600 tac 9537602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 43407047 - 43407182
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43407047 agaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 43407146  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcac 136  Q
    |||||||||||| |||||||||||||||||||||||    
T  43407147 catgaaaatgcaaactaaaacccgccactaaggcac 43407182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 338634 - 338499
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  338634 agaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgacatgcatgat 338535  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcac 136  Q
    |||||||||||| |||||||||||||||||||||||    
T  338534 catgaaaatgcaaactaaaacccgccactaaggcac 338499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 8422088 - 8421953
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||  | |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  8422088 agaaatataatcacaattcccgccactaaggcatccacacagaatataattgcaatttccgccactaaggcaccacatagatgcatatgccatgcatgat 8421989  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcac 136  Q
    |||||||||||||||||||||||||| |||||||||    
T  8421988 catgaaaatgcagactaaaacccgccgctaaggcac 8421953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 35761741 - 35761909
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgtta 156  Q
    ||||||||  ||||||||||||||||||||||| | |||||||||||||||||| ||| ||||  |||||||| |||||||| |||||| ||||||||||    
T  35761741 cccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagattaaattccgccacttaggcacaacaatgcagtatgatgtta 35761840  T
Q  157 tcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 225  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  35761841 tcctgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaatgcatagtcaaata 35761909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 9537070 - 9537206
Alignment:
Q  4 aatataattgcgattcccgccactaaggcatccacagagaatataattgc----aattcccgccactaaggcaccacacagatgcatatgccatgcatga 99  Q
    ||||||||||| |||||||||||||||||||| | | |||||||||||||    |||||||||||||||||||||||||| |||||||||||||||||||    
T  9537070 aatataattgcaattcccgccactaaggcatctatatagaatataattgcttgcaattcccgccactaaggcaccacacaaatgcatatgccatgcatga 9537169  T
Q  100 tcatgaaaatgcagactaaaacccgccactaaggcac 136  Q
    ||||||||||| |||||||||||||||||||||||||    
T  9537170 tcatgaaaatgtagactaaaacccgccactaaggcac 9537206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 490 - 625
Target Start/End: Complemental strand, 338135 - 338001
Alignment:
Q  490 agacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcgtaagctttcctcccaatcaaa 589  Q
    ||||||||||  ||||||||| || |||||||| || ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  338135 agacaagaattactacctctacttaataacatagtc-tagcacttagtatggacgtatggggaaaaagcccttacctcgtaagctttcctcccaatcaaa 338037  T
Q  590 cgactacaaggttctctaaattagcaggttcaaagc 625  Q
    |||||||||||| ||||||||| |||||||||||||    
T  338036 cgactacaaggtcctctaaatttgcaggttcaaagc 338001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 399 - 566
Target Start/End: Complemental strand, 16074879 - 16074710
Alignment:
Q  399 atcatataaaatataattaaa-ctaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaaga 497  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||| ||||||||||||| ||||||  ||||||| ||| ||||| |    
T  16074879 atcatataaaatataattaaatctaataacttttataaaagattaaattttaacatatgaattcatattttaattgttt--ttctttttaacggacaaaa 16074782  T
Q  498 atctctacctctaattcataa---cataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    ||||||| |||||||||||||   ||| |||| ||||||||||| ||||||||||| |||||||||||||||    
T  16074781 atctctatctctaattcataatatcatcatcccagtacttagtatgaacgtatgggaaaaaagcccttacct 16074710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 33007334 - 33007450
Alignment:
Q  4 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 103  Q
    ||||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||    
T  33007334 aatataattgcaattcccgccactaagacatccacacataatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgattat 33007433  T
Q  104 gaaaatgcagactaaaa 120  Q
    ||||||| |||||||||    
T  33007434 gaaaatgtagactaaaa 33007450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 19198451 - 19198622
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatga---tg 153  Q
    ||||||||  ||||||||||||||||||||||  | ||||||||||| |||||| ||| ||||  |||||||| ||| |||| ||||||||||||   ||    
T  19198451 cccgccacacaggcaccacacagatgcatatgttaatgcatgatcataaaaatgaagattaaattccgccacttaggtacaacaatgcaatatgatgatg 19198550  T
Q  154 ttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 225  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||  ||||| ||||||    
T  19198551 ttatcccgccactaaggcaccacaaagaaatatattattaacccgtcattaaggcaaatgcatagtcaaata 19198622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 16075252 - 16075097
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagac 115  Q
    |||||||||||||||||||||||  | |||||||||| ||  |||||||||||| |||||||||||||||| |||||||||||||||||||||||||  |    
T  16075252 attcccgccactaaggcatccacccaaaatataattgtaac-cccgccactaagacaccacacagatgcatttgccatgcatgatcatgaaaatgcatcc 16075154  T
Q  116 taaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggca 172  Q
    |||| ||||||||| |||||| | || | |||||||| ||| ||||||| |||||||    
T  16075153 taaatcccgccactcaggcaccacaaagtaatatgatattaacccgccattaaggca 16075097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 444 - 579
Target Start/End: Original strand, 21264718 - 21264853
Alignment:
Q  444 attttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaac 543  Q
    |||||||||| |||||  |||||||| ||||||| |||||||||| ||||||||||  ||||| ||  || || ||| |  ||||| |||||||||||||    
T  21264718 attttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaattgctacccctgtttaatcacaaagccctagcacttagtaagaac 21264817  T
Q  544 gtatggggaaaaagcccttacctcgtaagctttcct 579  Q
    ||||||||||||||||||||||||||||||||||||    
T  21264818 gtatggggaaaaagcccttacctcgtaagctttcct 21264853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 25921992 - 25921879
Alignment:
Q  21 cgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaa 120  Q
    ||||||||||||| ||||| | |||||||||| ||| ||| |||||||||||||||||||||||||||| |||| ||||||||||||||| | || |||     
T  25921992 cgccactaaggca-ccacacaaaatataattgtaat-cccaccactaaggcaccacacagatgcatatgtcatgtatgatcatgaaaatgtaaacaaaat 25921895  T
Q  121 cccgccactaaggcac 136  Q
    |||| |||| ||||||    
T  25921894 cccgtcacttaggcac 25921879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 524 - 625
Target Start/End: Original strand, 43407964 - 43408066
Alignment:
Q  524 tcctagtacttagtaagaacgtatggggaaaaagcccttacctcgtaagc-tttcctcccaatcaaacgactacaaggttctctaaattagcaggttcaa 622  Q
    |||||| |||||||| | |||||||||||||||||||||||||||  ||| |||| ||| | ||||||||||||||||| |||||| || ||||||||||    
T  43407964 tcctagcacttagtatggacgtatggggaaaaagcccttacctcgagagcttttcttcctagtcaaacgactacaaggtcctctaattttgcaggttcaa 43408063  T
Q  623 agc 625  Q
    |||    
T  43408064 agc 43408066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 462 - 565
Target Start/End: Complemental strand, 6836056 - 6835953
Alignment:
Q  462 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 561  Q
    |||||||| ||||||| |||||||||| ||||||||||  ||||| ||| || || | | |  ||||| |||||||||||||||||||||||||||||||    
T  6836056 atattttaattgttttcttcttttcaaaagacaagaattgctacccctatttaatcataaagccctagcacttagtaagaacgtatggggaaaaagccct 6835957  T
Q  562 tacc 565  Q
    ||||    
T  6835956 tacc 6835953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 9537030 - 9537099
Alignment:
Q  3 aaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggca 72  Q
    |||||||| ||| |||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||    
T  9537030 aaatataactgcaattcccaccactaaggcatctatatagaatataattgcaattcccgccactaaggca 9537099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 33007307 - 33007360
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaag 69  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  33007307 attcccgccactaagacatccacacataatataattgcaattcccgccactaag 33007360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 6836445 - 6836394
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaat 109  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  6836445 cccgccacacaggcaccacacagatgcatatgccatgcatgatcaggaaaat 6836394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 18472635 - 18472677
Alignment:
Q  68 aggcaccacacagatgcatatgccatgcatgatcatgaaaatg 110  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  18472635 aggcaccacacagatgcatatgctatgcatgatcatgaaaatg 18472677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 9537004 - 9537060
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggca 72  Q
    ||||||||| |||||||||||||| | ||||||| |||||||||| |||||||||||    
T  9537004 attcccgccgctaaggcatccacacaaaatataactgcaattcccaccactaaggca 9537060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 28561885 - 28561815
Alignment:
Q  61 gccactaaggcaccacacaga--tgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccact 129  Q
    |||||||||||||||||||||  |||||||  |||||||||||||||||||| | | |||| |||||||||    
T  28561885 gccactaaggcaccacacagaaatgcatatatcatgcatgatcatgaaaatgaaaattaaatcccgccact 28561815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 6836310 - 6836253
Alignment:
Q  119 aacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccac 176  Q
    ||||||||||| |||||||| ||||||||||||| ||  |||||||| ||||||||||    
T  6836310 aacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccac 6836253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 566
Target Start/End: Complemental strand, 8421660 - 8421574
Alignment:
Q  479 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    ||||||| || ||||||||||  |||| |||| || |||||| |  ||||| |||||||| | |||||||||||||||||||||||||    
T  8421660 ttctttttaaaagacaagaattgctacttctacttaataacacag-cctagcacttagtatgtacgtatggggaaaaagcccttacct 8421574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 582
Target Start/End: Complemental strand, 24275645 - 24275554
Alignment:
Q  491 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcgtaagctttcctccc 582  Q
    ||||||||| | |||| ||| |||||||||   |||||| ||||| |||||||||| | |||||||||||||||||   | |||||||||||    
T  24275645 gacaagaatttttaccactatttcataacaaggtcctagcacttaataagaacgtacgaggaaaaagcccttaccttagatgctttcctccc 24275554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 16075150 - 16075096
Alignment:
Q  156 atcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaa 210  Q
    ||||||||||| ||||||||| ||| |||||  ||||||||||||| ||||||||    
T  16075150 atcccgccactcaggcaccacaaagtaatatgatattaacccgccattaaggcaa 16075096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 114 - 568
Target Start/End: Complemental strand, 9281 - 8838
Alignment:
Q  114 actaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaaact 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9281 actaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggcaaact 9182  T
Q  214 catagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatcttcatttatttagtttatcagc 313  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||                 |||||||||||||||||    
T  9181 catagacaaatacagtcagatattaacacatcatcatccacatggaccaatctgaaatattttcat-----------------ttatttagtttatcagc 9099  T
Q  314 aaagtctaacacttctttacaataccacagaaacatgtatgaatagaaaaa------taaatgtcattccacataacattatcatacaaacatcatataa 407  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||      ||||||||||||||||||||||||||||||| |||||||||||    
T  9098 aaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaataaaataaatgtcattccacataacattatcatacagacatcatataa 8999  T
Q  408 aatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacct 507  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  8998 aatataattaaactaataactgttataaaaggttaaattttaccatgtgaattcatattttagttgttttgttcttttcaacagacaagaatttatacct 8899  T
Q  508 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcg 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8898 ctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcg 8838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 537346 - 536895
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||     
T  537346 agaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgccatgcacgaa 537247  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgcc 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||             ||| |||||||||||||||||||||||    
T  537246 catgaaaatgcacactaaaacccgccactaaggcacaataatgcaatatgatgttatccc-------------cacaaagaaatatattattaacccgcc 537160  T
Q  201 actaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatcttcatttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||                 ||||    
T  537159 actaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatattttcat-----------------ttat 537077  T
Q  301 ttagtttatcagcaaagtctaacacttctttacaataccacagaaacatgtatgaatagaaaaataaatgtcattccacataacattatcatacaaacat 400  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||   ||| |||||||||||||||||||||||| ||||    
T  537076 ttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa---atgccattccacataacattatcatacagacat 536980  T
Q  401 catataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttctttt 485  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  536979 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttctttt 536895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 58 - 570
Target Start/End: Original strand, 4557694 - 4558226
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaa-aatgcagactaaaacccgccactaaggcacaataatgcaatatgatgtt 155  Q
    ||||||||  |||||||||| |||||||||||| | |||||||||||||| |||| |||||||| || |||||| |||||||| ||||||||||||| ||    
T  4557694 cccgccacacaggcaccacagagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaacaatgcaatatgatatt 4557793  T
Q  156 atcccgccactaaggcaccaccaagaaatatattattaa--cccgccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatcca 253  Q
    ||| |||||||||||||||||  ||||||||||||||||  |||||||||||||||| ||||||  |||| ||| |||| ||||||||||||||||||||    
T  4557794 atcgcgccactaaggcaccacacagaaatatattattaatacccgccactaaggcaacctcataagcaaacacaatcaggtattaacatatcatcatcca 4557893  T
Q  254 catggaccaaactgaaatattttcataaaactcgtatct--------tcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaga 344  Q
    |||| |||||| ||||||||||||||||||||| ||| |        |||||| |||||||||||| |||| || |||||||||||  |||||||||| |    
T  4557894 catgaaccaaaatgaaatattttcataaaactcatatttatatattttcatttctttagtttatcaacaaaatccaacacttctttctcaataccacaaa 4557993  T
Q  345 aa--catgtatgaatagaaaaataaat-----gtcattccacataacattatcatacaaacatcatataaaatataattaaactaataactcttataaaa 437  Q
    ||  ||| |||| |||  ||||||||      ||||||| || ||||||||| ||||| |||| ||||||||||| ||||||||||||||| ||||||||    
T  4557994 aaaacatatatgcatatcaaaataaaataaaagtcattctacgtaacattattatacacacattatataaaatatgattaaactaataacttttataaaa 4558093  T
Q  438 ggttaaattttaccatataaattcatattttagttgttttgt-tcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttag 536  Q
    ||||||||||||||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||||    
T  4558094 ggttaaattttaccatataaattcatattttagtttttttctctcttctcaacagacaagaatctctacctctaaatcataacatcatcctaatacttag 4558193  T
Q  537 taagaacgtatggggaaaaagcccttacctcgta 570  Q
    ||   |||||| ||||||||||||||||||||||    
T  4558194 tatagacgtat-gggaaaaagcccttacctcgta 4558226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 405 - 565
Target Start/End: Complemental strand, 536891 - 536731
Alignment:
Q  405 taaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctcta 504  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  536891 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctcta 536792  T
Q  505 cctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536791 cctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 40691401 - 40691266
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  40691401 agaaatataattgtaattcccgccactaaggcatccacacagaatataattgcaatttccgccaataaggcaccacacagatgcatatgccttgcatgat 40691302  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcac 136  Q
    |||||||||||||||||||||||| |||||||||||    
T  40691301 catgaaaatgcagactaaaacccgtcactaaggcac 40691266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 30910309 - 30910117
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagac 115  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||||||    
T  30910309 attcccgacactaaggcatccacacagaatataattgcaattcccgctactaagagaccacacagatgcatatgccatgcatgatcatggaaatgcagac 30910210  T
Q  116 taaaacccgccactaaggcacaata-atgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaa 210  Q
    | ||| ||||||||||||||| | | ||  ||||| ||  || ||||||||| ||||||||| |||||||||  |||||||  |||||||||||||    
T  30910209 t-aaatccgccactaaggcaccacacat--aatataattataacccgccacttaggcaccactaagaaatatgatattaacttgccactaaggcaa 30910117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 38001503 - 38001301
Alignment:
Q  4 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 103  Q
    ||||||||||| |||||||||||||| ||||||||| |  ||||||||||||||||||||||| || ||||||||||||||||||| |||||  ||||||    
T  38001503 aatataattgcaattcccgccactaatgcatccacacaagatataattgcaattcccgccact-agacaccacacagatgcatatgtcatgc--gatcat 38001407  T
Q  104 gaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccact 203  Q
    ||||||||||| ||||||||||||||||| ||| | |  | ||||| ||  || | ||||||||| |||||||   || ||||| |||||||||||||||    
T  38001406 gaaaatgcagattaaaacccgccactaagacaccacacag-aatataattataactcgccactaaagcaccacacggatatataatattaacccgccact 38001308  T
Q  204 aaggcaa 210  Q
    |||||||    
T  38001307 aaggcaa 38001301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 479 - 566
Target Start/End: Complemental strand, 27026708 - 27026621
Alignment:
Q  479 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    |||||||||| ||||||||||   |||| ||| || |||||| |||||||| ||||||||| ||||||||||||||||||||||||||    
T  27026708 ttcttttcaaaagacaagaattgttaccactatttaataacacaatcctagcacttagtaaaaacgtatggggaaaaagcccttacct 27026621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 25101617 - 25101669
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 110  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||||||||||    
T  25101617 cccgccacacaggcaccacacagatgcatataccatgcatgatcatgaaaatg 25101669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 25160710 - 25160762
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 110  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||||||||||    
T  25160710 cccgccacacaggcaccacacagatgcatataccatgcatgatcatgaaaatg 25160762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 38001530 - 38001478
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaa 68  Q
    |||||| |||| |||||||||||| ||||||||||||||||||||||||||||    
T  38001530 attcccaccaccaaggcatccacacagaatataattgcaattcccgccactaa 38001478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 6309237 - 6309186
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaat 109  Q
    ||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  6309237 cccgccacacagacaccacacagatgcatatgccatgcatgatcatgaaaat 6309186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 6309184 - 6309116
Alignment:
Q  140 aatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggca 209  Q
    ||||||||||||| ||| |||||||||||||||||||  || |||||| || ||||||||||||||||||    
T  6309184 aatgcaatatgatattaacccgccactaaggcaccacacag-aatataatagtaacccgccactaaggca 6309116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 27026905 - 27026847
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcacca 75  Q
    ||||| |||||||||||||||||| |||||||||||  || |||||||||||||||||||    
T  27026905 attcctgccactaaggcatccacacagaatataattataa-tcccgccactaaggcacca 27026847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 42861869 - 42861832
Alignment:
Q  73 ccacacagatgcatatgccatgcatgatcatgaaaatg 110  Q
    |||||||||||||||||| |||||||||||||||||||    
T  42861869 ccacacagatgcatatgctatgcatgatcatgaaaatg 42861832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 6309166 - 6309107
Alignment:
Q  19 cccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacaga 81  Q
    ||||||||||||||| ||||| |||||||||| | ||  ||||||||||||||||||||||||    
T  6309166 cccgccactaaggca-ccacacagaatataatagtaa--cccgccactaaggcaccacacaga 6309107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 564
Target Start/End: Complemental strand, 6308710 - 6308625
Alignment:
Q  479 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttac 564  Q
    |||||||||| ||||||||||  ||||| ||| || |||||| | |||||  | ||| ||||||| |||||| |||||||||||||    
T  6308710 ttcttttcaagagacaagaattgctaccactatttaataacacagtcctaacatttaataagaacctatgggaaaaaagcccttac 6308625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 25101724 - 25101773
Alignment:
Q  158 cccgccactaaggcaccaccaagaaatatattattaacccgccactaagg 207  Q
    ||||||||||||||| ||||||||| ||||   |||||||||||||||||    
T  25101724 cccgccactaaggcaacaccaagaattataagtttaacccgccactaagg 25101773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 25160817 - 25160866
Alignment:
Q  158 cccgccactaaggcaccaccaagaaatatattattaacccgccactaagg 207  Q
    ||||||||||||||| ||||||||| ||||   |||||||||||||||||    
T  25160817 cccgccactaaggcaacaccaagaattataagtttaacccgccactaagg 25160866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 361 - 566
Target Start/End: Original strand, 28969228 - 28969431
Alignment:
Q  361 aaaataaatgtcattccacataacattatcatacaaacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaatt 460  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  28969228 aaaataaatgtcattctacataaaattatcatacacacatcatatagaatataattaaactaataacttttataaaatgttaaattttaccatataaatt 28969327  T
Q  461 catattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccc 560  Q
     |||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||| |||    
T  28969328 aatattttagttgttt--ttcttctcaacagacaagaatttctacctctaattcataacatcatcctagtacttagtatggacgtatgaggaaaaaaccc 28969425  T
Q  561 ttacct 566  Q
    ||||||    
T  28969426 ttacct 28969431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 194 - 533
Target Start/End: Complemental strand, 49499398 - 49499045
Alignment:
Q  194 acccgccactaaggcaaactcatagacaaatacagtcagatattaacatatcatcatccacatggaccaaactgaaatattttcataaaactcgtatct- 292  Q
    ||||||||||||||||| ||||||  |||| ||| | || |||||||| ||||||||||||||| |||||| ||||||||||||||||||||| ||| |     
T  49499398 acccgccactaaggcaacctcataagcaaacacaattaggtattaacacatcatcatccacatgaaccaaaatgaaatattttcataaaactcatatttc 49499299  T
Q  293 -------tcatttatttagtttatcagcaaagtctaacacttctttac-aataccacagaaa-catgtatgaatagaaaaataaa-----tgtcattcca 378  Q
           |||||| |||||||||||| |||| || ||||||||||| | ||||||||| ||| ||| |||| |||  ||||||||     |||||||| |    
T  49499298 tatattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaacatatatgcatatcaaaataaaataaatgtcattcta 49499199  T
Q  379 cataacattatcatacaaacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttg 478  Q
    | ||||||  | ||||| |||| ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||     
T  49499198 cgtaacatctt-atacacacattatataaaatataattaaactaataatttttataaaaggttaaattttactatataaattcatattttagtttttttt 49499100  T
Q  479 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtact 533  Q
    ||||| |||||||||||||||||| |||||||||||||||||| |||||||||||    
T  49499099 ttcttctcaacagacaagaatctccacctctaattcataacatgatcctagtact 49499045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 40459477 - 40459293
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  40459477 agaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgacatgcatgat 40459378  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatat 186  Q
    ||||||||||||  ||||||||||||||||||||||||  ||  ||||| ||  || ||||||||| ||||||||| |||||||||    
T  40459377 catgaaaatgcaacctaaaacccgccactaaggcacaa-catagaatataattataacccgccacttaggcaccactaagaaatat 40459293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 55162676 - 55162545
Alignment:
Q  4 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 103  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55162676 aatataattgcaattcccgccactaaggca-ccacacagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 55162578  T
Q  104 gaaaatgcagactaaaacccgccactaaggcac 136  Q
    ||||||||||||||||| ||| ||| |||||||    
T  55162577 gaaaatgcagactaaaatccgtcaccaaggcac 55162545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 58 - 225
Target Start/End: Complemental strand, 49499572 - 49499403
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaa-aatgcagactaaaacccgccactaaggcacaataatgcaatatgatgtt 155  Q
    ||||||||  ||||||||||||||||||||||| | |||||||||||||| |||| |||||||| || |||||| |||||||| ||||||||||||| |     
T  49499572 cccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaacaatgaagactaaatccagccacttaggcacaaaaatgcaatatgatatc 49499473  T
Q  156 atcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaaactcatagacaaata 225  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||||| ||||||    
T  49499472 atcccgccactaaggcaccacacagaaatatattattaacccgccactaaggcaaatgcatagtcaaata 49499403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 28968919 - 28969059
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcat-----atgccatgc 95  Q
    ||||||||||||||  |||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||     |||||||||    
T  28968919 agaaatataattgcatttcccgccaccaagacatccacacaaaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgccatgc 28969018  T
Q  96 atgatcatgaaaatgcagactaaaacccgccactaaggcac 136  Q
    ||||||||||||||||||| |||||||  ||||||||||||    
T  28969019 atgatcatgaaaatgcagattaaaacctaccactaaggcac 28969059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 13653058 - 13652932
Alignment:
Q  4 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 103  Q
    ||||||||||| ||| ||||||||||| ||| |||| | |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  13653058 aatataattgcaatttccgccactaagacattcacacaaaatataattgcaattctcgccactaaggcaccacacaaatgcatataccatgcatgatcat 13652959  T
Q  104 gaaaatgc-agactaaaacccgccact 129  Q
    |||||||| ||||||||||||||||||    
T  13652958 gaaaatgcaagactaaaacccgccact 13652932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 13661183 - 13661057
Alignment:
Q  4 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 103  Q
    ||||||||||| ||| ||||||||||| ||| |||| | |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  13661183 aatataattgcaatttccgccactaagacattcacacaaaatataattgcaattctcgccactaaggcaccacacaaatgcatataccatgcatgatcat 13661084  T
Q  104 gaaaatgc-agactaaaacccgccact 129  Q
    |||||||| ||||||||||||||||||    
T  13661083 gaaaatgcaagactaaaacccgccact 13661057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 55162718 - 55162638
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacaga 81  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55162718 agaaatataattgcaattcccgccactaaggcatccacacagaatataattgcaattcccgccactaaggcaccacacaga 55162638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 462 - 599
Target Start/End: Complemental strand, 69352 - 69218
Alignment:
Q  462 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 561  Q
    |||||||| |||||||  ||||||||| ||||||||||  ||||| ||| || |||||| | |||||  |||||||| | ||||||||| ||||| ||||    
T  69352 atattttaattgtttt--tcttttcaagagacaagaattgctaccactatttaataacacagtcctaacacttagtatggacgtatgggaaaaaa-ccct 69256  T
Q  562 tacctcgtaagctttcctcccaatcaaacgactacaag 599  Q
    |||||||||||||||||| |||||||||||||||||||    
T  69255 tacctcgtaagctttccttccaatcaaacgactacaag 69218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 479 - 625
Target Start/End: Complemental strand, 40458992 - 40458846
Alignment:
Q  479 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcgtaagc-tttc 577  Q
    ||||||| || ||||||||||  ||||||||| || |||||| | || ||| |||||||| | |||||||||||||||||||||||||||  ||| ||||    
T  40458992 ttctttttaaaagacaagaattgctacctctacttaataacacagtc-tagcacttagtatggacgtatggggaaaaagcccttacctcgagagcttttc 40458894  T
Q  578 ctcccaatcaaacgactacaaggttctctaaattagcaggttcaaagc 625  Q
     ||| | ||||||||||||||||| |||||| || |||||||||||||    
T  40458893 ttcctagtcaaacgactacaaggtcctctaattttgcaggttcaaagc 40458846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 2761801 - 2761849
Alignment:
Q  62 ccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatg 110  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2761801 ccactaaggcaccacacaaatgcatatgccatgcatgatcatgaaaatg 2761849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 69833 - 69782
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaat 109  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  69833 cccgccacacaggcaccacacagatgcatatgccatgcatgatcatgaaaat 69782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 69692 - 69635
Alignment:
Q  119 aacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccac 176  Q
    ||||||||||| |||||||| ||||||||||||| ||  |||||||| ||||||||||    
T  69692 aacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccac 69635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 69780 - 69712
Alignment:
Q  140 aatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggca 209  Q
    ||||||||||||| ||| |||||||||||||||||||  || |||||| |  ||||||||||||||||||    
T  69780 aatgcaatatgatattaacccgccactaaggcaccacacag-aatataatcgtaacccgccactaaggca 69712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 69762 - 69703
Alignment:
Q  19 cccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacaga 81  Q
    ||||||||||||||| ||||| |||||||||| | ||  ||||||||||||||||||||||||    
T  69762 cccgccactaaggca-ccacacagaatataatcgtaa--cccgccactaaggcaccacacaga 69703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 13653074 - 13653032
Alignment:
Q  27 taaggcatccacagagaatataattgcaattcccgccactaag 69  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||    
T  13653074 taaggaatccacacagaatataattgcaatttccgccactaag 13653032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 13661199 - 13661157
Alignment:
Q  27 taaggcatccacagagaatataattgcaattcccgccactaag 69  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||    
T  13661199 taaggaatccacacagaatataattgcaatttccgccactaag 13661157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 5e-67; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 415 - 568
Target Start/End: Original strand, 32735391 - 32735544
Alignment:
Q  415 ttaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattc 514  Q
    ||||||||||| || |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32735391 ttaaactaatatcttttataaaaggttaaatttcaccatatgaatgcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattc 32735490  T
Q  515 ataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcg 568  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32735491 ataacataatcctagcacttagtaagaacgtatggggaaaaagcccttacctcg 32735544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 40448007 - 40447872
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  40448007 agaaatataattgcaattcccgccactaaggcatccacagagaatataattgcaaatcccgccactaaggcaccacacagatgcatatgacatgcatgat 40447908  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcac 136  Q
    |||||||||||| |||||||||||||||||||||||    
T  40447907 catgaaaatgcaaactaaaacccgccactaaggcac 40447872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 18292396 - 18292582
Alignment:
Q  23 ccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacc 122  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18292396 ccactaaggcatccacacagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacc 18292495  T
Q  123 cgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaa 210  Q
    |||||||||||||| |  |   ||||| ||  || ||||||||||||||||| |  ||| ||||| ||||||||| ||||||||||||    
T  18292496 cgccactaaggcacca-cacaaaatataattataacccgccactaaggcaccccacagatatataatattaacccaccactaaggcaa 18292582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 40729107 - 40729242
Alignment:
Q  1 agaaatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgat 100  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  40729107 agaaatataattgcaattcccgccactaaggcatccacgcagaatataattgcaatttccaccactaaggcaccacacagatgcatatgccatgcatgat 40729206  T
Q  101 catgaaaatgcagactaaaacccgccactaaggcac 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  40729207 catgaaaatgcagactaaaacccgccactaaggcac 40729242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 41339936 - 41340068
Alignment:
Q  4 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 103  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  41339936 aatataattgcaatttccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacaggtgcatatgccatgcatggtcat 41340035  T
Q  104 gaaaatgcagactaaaacccgccactaaggcac 136  Q
    ||||||| |||||||||||||||||||||||||    
T  41340036 gaaaatgaagactaaaacccgccactaaggcac 41340068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 28266807 - 28266964
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggca-ccacacagatgcatatgccatgcatgatcatgaaaatgcaga 114  Q
    ||||||||||||||| |||||||| |||||||||||| ||| |||||||||||| || ||||| ||||||||||||||||||||||||| |||||| |||    
T  28266807 attcccgccactaagacatccacatagaatataattgtaat-cccgccactaagacatccacatagatgcatatgccatgcatgatcattaaaatgaaga 28266905  T
Q  115 ctaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcac 173  Q
    ||||| ||||||||  |||||||| ||||||||||||| |||| |||||||||||||||    
T  28266906 ctaaatcccgccacacaggcacaacaatgcaatatgatattatgccgccactaaggcac 28266964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 34397514 - 34397632
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagac 115  Q
    ||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  34397514 attcccgccactaagacatccacacagaatataattgcaatttctgccactaaggcaccacacagatgcatataccatgcatgatcatg--aatgcagac 34397611  T
Q  116 taaaacccgccactaaggcac 136  Q
    |||||||||||||||||||||    
T  34397612 taaaacccgccactaaggcac 34397632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 490 - 625
Target Start/End: Complemental strand, 40447508 - 40447374
Alignment:
Q  490 agacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcgtaagctttcctcccaatcaaa 589  Q
    ||||||||||  ||||||||| || |||||||| || ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40447508 agacaagaattactacctctacttaataacatagtc-tagcacttagtatggacgtatggggaaaaagcccttacctcgtaagctttcctcccaatcaaa 40447410  T
Q  590 cgactacaaggttctctaaattagcaggttcaaagc 625  Q
    |||||||||||| ||||||||| |||||||||||||    
T  40447409 cgactacaaggtcctctaaatttgcaggttcaaagc 40447374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 399 - 568
Target Start/End: Complemental strand, 1193765 - 1193597
Alignment:
Q  399 atcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaa 498  Q
    |||||||||||   ||||||| |||| ||||||||||||  ||| | |||||||| |||||  |||||||| ||||||| |||||||||| |||||||||    
T  1193765 atcatataaaactcaattaaaataatcactcttataaaatattagactttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaa 1193666  T
Q  499 tctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcg 568  Q
    |  ||||| ||  || |||||| | | |||| ||||||||||||| ||| ||||||||||||||||||||    
T  1193665 ttgctacccctgtttaataacaaagtactagcacttagtaagaacttat-gggaaaaagcccttacctcg 1193597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 439 - 566
Target Start/End: Original strand, 12774931 - 12775056
Alignment:
Q  439 gttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagta 538  Q
    ||||||| ||||||  |||||  ||||||||||||||||  ||||| ||| ||| |||||| | ||| ||||||||| ||||| |||||||||||| |||    
T  12774931 gttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactttgta 12775028  T
Q  539 agaacgtatggggaaaaagcccttacct 566  Q
     | |||||||||||||||||||||||||    
T  12775029 tggacgtatggggaaaaagcccttacct 12775056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 12774137 - 12774244
Alignment:
Q  66 taaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccac 165  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |   | || ||||||||| |||||| | || |  ||||||| ||||||||||||    
T  12774137 taaggcaccacacagatgcatatgcgatgcatgatcatgaaaatgaatcatgaatcccgccacttaggcaccacaaagagatatgatattatcccgccac 12774236  T
Q  166 taaggcac 173  Q
    ||||||||    
T  12774237 taaggcac 12774244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 439 - 566
Target Start/End: Original strand, 28267669 - 28267793
Alignment:
Q  439 gttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagta 538  Q
    ||||||| ||||||  |||||  ||||||||||||||||  ||||||||| ||| |||||| | ||| ||||||||| ||||| ||||||||||||||||    
T  28267669 gttaaatattaccacctaaatatatattttagttgtttt--tcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttagta 28267766  T
Q  539 agaacgtatggggaaaaagcccttacct 566  Q
     | |||||| |||||||| |||||||||    
T  28267767 tggacgtat-gggaaaaaacccttacct 28267793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 41339912 - 41339965
Alignment:
Q  19 cccgccactaaggcatccacagagaatataattgcaattcccgccactaaggca 72  Q
    |||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  41339912 cccgccactaaggcatccgcaaagaatataattgcaatttccgccactaaggca 41339965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 44789053 - 44789002
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaat 109  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  44789053 cccgccacacaggcaccacacagatgcatatgccttgcatgatcatgaaaat 44789002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 373 - 499
Target Start/End: Complemental strand, 29270827 - 29270702
Alignment:
Q  373 attccacataacattatcataca--aacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttag 470  Q
    ||||||||| ||||| |||||||  || |||| ||||| |||||||||| |||||| | ||||||||  ||||||||||| || ||| | |||||||||     
T  29270827 attccacatcacattctcatacacaaatatcaaataaa-tataattaaaataataatttttataaaatattaaattttactatgtaactacatattttaa 29270729  T
Q  471 ttgttttgttcttttcaacagacaagaat 499  Q
    ||||||  |||||||||| ||||||||||    
T  29270728 ttgttt--ttcttttcaaaagacaagaat 29270702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 35670502 - 35670541
Alignment:
Q  71 caccacacagatgcatatgccatgcatgatcatgaaaatg 110  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  35670502 caccacacagatgcatatgctatgcatgatcatgaaaatg 35670541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 29271078 - 29270994
Alignment:
Q  92 atgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccac 176  Q
    ||||||||||||||||||| | | |||| |||| |||| ||||||   || |||||||||| ||| ||| |||||||||||||||    
T  29271078 atgcatgatcatgaaaatgaaaattaaatcccgtcacttaggcaccccaaagcaatatgatattaacccaccactaaggcaccac 29270994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 566
Target Start/End: Original strand, 23828298 - 23828373
Alignment:
Q  491 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    ||||||||| |||||| ||| ||||||||| | |||||  ||||||||||||||| |||| |||||  ||||||||    
T  23828298 gacaagaatttctaccactatttcataacaaagtcctaacacttagtaagaacgtgtgggaaaaaaatccttacct 23828373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 36731989 - 36732043
Alignment:
Q  156 atcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggcaa 210  Q
    ||||||||||| ||||| ||| |||||||||  |||||||||||| |||||||||    
T  36731989 atcccgccacttaggcatcactaagaaatatgatattaacccgcccctaaggcaa 36732043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 12774190 - 12774243
Alignment:
Q  156 atcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggca 209  Q
    ||||||||||| ||||||||| |||| ||||  ||||| |||||||||||||||    
T  12774190 atcccgccacttaggcaccacaaagagatatgatattatcccgccactaaggca 12774243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 36731900 - 36731961
Alignment:
Q  68 aggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccact 129  Q
    ||||| |||||| |||||||||||||||||||| |||| |||  | |||||| |||||||||    
T  36731900 aggcagcacacaaatgcatatgccatgcatgataatgataataaaaactaaatcccgccact 36731961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 550
Target Start/End: Complemental strand, 44788617 - 44788531
Alignment:
Q  462 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggg 550  Q
    |||||||| |||||||  ||||||||| |||||| |||  ||||| ||| || |||||| | |||||  ||||||||||||||||||||    
T  44788617 atattttaattgtttt--tcttttcaaaagacaataattactaccactatttaataacacagtcctaacacttagtaagaacgtatggg 44788531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 44788982 - 44788925
Alignment:
Q  19 cccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacaca 79  Q
    ||||||||||||||| ||||| |||||||||||| ||  ||| ||||||||||||||||||    
T  44788982 cccgccactaaggca-ccacacagaatataattgtaa--ccctccactaaggcaccacaca 44788925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 44789000 - 44788932
Alignment:
Q  140 aatgcaatatgatgttatcccgccactaaggcaccaccaagaaatatattattaacccgccactaaggca 209  Q
    ||||||||||||| ||| |||||||||||||||||||  || |||||| |  |||||| |||||||||||    
T  44789000 aatgcaatatgatattagcccgccactaaggcaccacacag-aatataattgtaaccctccactaaggca 44788932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 361 - 521
Target Start/End: Complemental strand, 379 - 221
Alignment:
Q  361 aaaataaatgtcattccacataacattatcatacaaacatcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaatt 460  Q
    |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  379 aaaataaatggcattctacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatagatt 280  T
Q  461 catattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacat 521  Q
     |||||||| || |||  ||||||| |||| ||||||||||||| ||||||||||||||||    
T  279 tatattttaattattt--ttctttttaacaaacaagaatctctatctctaattcataacat 221  T

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Target: scaffold1838; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 709 - 577
Alignment:
Q  4 aatataattgcgattcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcat 103  Q
    ||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||||| ||||||||||| | |||||||||    
T  709 aatataattgcaattcccgccactaaggcatccacacagactataattgcaattcccaccactaaggcatcacacaaatgcatatgcctttcatgatcat 610  T
Q  104 gaaaatgcagactaaaacccgccactaaggcac 136  Q
    |||||||||||||||||| ||||||||||||||    
T  609 gaaaatgcagactaaaactcgccactaaggcac 577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 736 - 670
Alignment:
Q  16 attcccgccactaaggcatccacagagaatataattgcaattcccgccactaaggca-ccacacaga 81  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||    
T  736 attcccgccactaaggcatccgcacagaatataattgcaattcccgccactaaggcatccacacaga 670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 41958124 - 41958236
Alignment:
Q  23 ccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacc 122  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41958124 ccactaaagcatccacacagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacc 41958223  T
Q  123 cgccactaaggca 135  Q
    |  ||||||||||    
T  41958224 catcactaaggca 41958236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 44436592 - 44436513
Alignment:
Q  57 tcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaaggcac 136  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||    
T  44436592 tcccgccacacaggcaccacacagatgcatatgccaagcatgatcatgaaaatagagactaaaacccaccactaaggcac 44436513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 40841215 - 40841322
Alignment:
Q  59 ccgccactaaggcaccacacagatgcatatgcca-tgcatgatcatgaaaatgcagactaaaacccgccactaaggcacaataatgcaatatgatgttat 157  Q
    |||||||  ||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||| ||  |||||||| ||||||||||||| ||      
T  40841215 ccgccacacaggcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaatcccgcaacataggcacaacaatgcaatatgatattta 40841314  T
Q  158 cccgccac 165  Q
    ||||||||    
T  40841315 cccgccac 40841322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 444 - 579
Target Start/End: Original strand, 22816469 - 22816602
Alignment:
Q  444 attttaccatataaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaac 543  Q
    ||||||||| |||||   |||||||| |||||||  ||||||||| ||||||||||  | ||| ||| || |||||| | |||||  |||||| ||||||    
T  22816469 attttaccacataaaaaaatattttaattgtttt--tcttttcaagagacaagaattgcaaccactatttaataacacagtcctaacacttagcaagaac 22816566  T
Q  544 gtatggggaaaaagcccttacctcgtaagctttcct 579  Q
    |||||||||||||||||||||||||  |||||||||    
T  22816567 gtatggggaaaaagcccttacctcgagagctttcct 22816602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 399 - 499
Target Start/End: Complemental strand, 35839268 - 35839168
Alignment:
Q  399 atcatataaaatataattaaactaataactcttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacagacaagaa 498  Q
    |||||||||||   ||||||| |||| ||||||||||||  ||| |||||||||| |||||  |||||||| ||||||| |||||||||| |||||||||    
T  35839268 atcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaa 35839169  T
Q  499 t 499  Q
    |    
T  35839168 t 35839168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 22635730 - 22635772
Alignment:
Q  68 aggcaccacacagatgcatatgccatgcatgatcatgaaaatg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22635730 aggcaccacacagatgcatatgccatgcatgatcatgaaaatg 22635772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 22816023 - 22816064
Alignment:
Q  68 aggcaccacacagatgcatatgccatgcatgatcatgaaaat 109  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  22816023 aggcaccgcacagatgcatatgccatgcatgatcatgaaaat 22816064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 564
Target Start/End: Original strand, 40841568 - 40841652
Alignment:
Q  479 ttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttac 564  Q
    |||||||||| ||||||||||  ||||| ||| || |||||| | |||||  ||||||||||||||||| ||||||||||||||||    
T  40841568 ttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaagaacgtat-gggaaaaagcccttac 40841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 567
Target Start/End: Original strand, 20264999 - 20265075
Alignment:
Q  491 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 567  Q
    ||||||||| |||||| ||| |||| ||||  ||||||| ||||| ||||||||||| |||||||| ||||||||||    
T  20264999 gacaagaatttctaccactacttcaaaacacgatcctagcacttactaagaacgtatcgggaaaaatcccttacctc 20265075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 567
Target Start/End: Original strand, 21051628 - 21051704
Alignment:
Q  491 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 567  Q
    ||||||||| |||||| ||| |||| ||||  ||||||| ||||| ||||||||||| |||||||| ||||||||||    
T  21051628 gacaagaatttctaccactacttcaaaacacgatcctagcacttactaagaacgtatcgggaaaaatcccttacctc 21051704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 3189139 - 3189179
Alignment:
Q  70 gcaccacacagatgcatatgccatgcatgatcatgaaaatg 110  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
T  3189139 gcaccacacaaatgcatatgtcatgcatgatcatgaaaatg 3189179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 3189234 - 3189288
Alignment:
Q  158 cccgccactaaggcaccaccaagaaatata---ttattaacccgccactaaggca 209  Q
    ||||||||||||||||||||||||| ||||   ||| | ||||||||||||||||    
T  3189234 cccgccactaaggcaccaccaagaattataagtttaattacccgccactaaggca 3189288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 491 - 566
Target Start/End: Original strand, 2645 - 2720
Alignment:
Q  491 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    ||||||||| |||||| ||| || |||||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  2645 gacaagaatttctaccactattttataacaaagtcctagcacttagtaagaacgtatggggaaaaagcccttacct 2720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 462 - 579
Target Start/End: Original strand, 243170 - 243287
Alignment:
Q  462 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 561  Q
    |||||||| ||||||| |||||||||| ||||||||||   |||| ||| || |||||| |  ||||  |||||||||||| |||||||||||| ||| |    
T  243170 atattttaattgttttcttcttttcaaaagacaagaattgatacccctatttaataacaaagccctaacacttagtaagaatgtatggggaaaacgccat 243269  T
Q  562 tacctcgtaagctttcct 579  Q
    ||||||| ||||||||||    
T  243270 tacctcgaaagctttcct 243287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 242732 - 242783
Alignment:
Q  58 cccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaat 109  Q
    ||||||||  |||||||||||| |||||||||| ||||| ||||||||||||    
T  242732 cccgccacacaggcaccacacatatgcatatgctatgcaagatcatgaaaat 242783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 242878 - 242935
Alignment:
Q  119 aacccgccactaaggcacaataatgcaatatgatgttatcccgccactaaggcaccac 176  Q
    |||| ||||||||||||||| ||||||||||||| ||  |||| ||| ||||||||||    
T  242878 aacctgccactaaggcacaacaatgcaatatgatatttacccgtcacaaaggcaccac 242935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 491 - 566
Target Start/End: Original strand, 356884 - 356959
Alignment:
Q  491 gacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 566  Q
    ||||||||| |||||| ||| |||| ||||   |||||| ||||||||||||||||||||||||||  ||||||||    
T  356884 gacaagaatttctaccactacttcaaaacacggtcctagcacttagtaagaacgtatggggaaaaaatccttacct 356959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 32991 - 33078
Alignment:
Q  19 cccgccactaaggcatccacagagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaa 108  Q
    ||||||||  ||||||||||| |||||||||||   |  |||| |||  |||||||||||||||||||||| |||||||||| |||||||    
T  32991 cccgccacacaggcatccacacagaatataattatga--cccgtcacacaggcaccacacagatgcatatgtcatgcatgataatgaaaa 33078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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