View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17135_high_4 (Length: 398)

Name: NF17135_high_4
Description: NF17135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17135_high_4
NF17135_high_4
[»] chr6 (3 HSPs)
chr6 (19-232)||(32091794-32092007)
chr6 (209-370)||(32092047-32092209)
chr6 (21-232)||(12287178-12287388)
[»] chr7 (3 HSPs)
chr7 (40-232)||(2269036-2269227)
chr7 (241-313)||(13579873-13579945)
chr7 (237-304)||(13585411-13585478)
[»] chr1 (1 HSPs)
chr1 (19-232)||(9391947-9392157)
[»] chr4 (2 HSPs)
chr4 (229-305)||(6632196-6632272)
chr4 (229-306)||(36893467-36893544)
[»] chr5 (2 HSPs)
chr5 (158-222)||(19022693-19022757)
chr5 (158-222)||(22066569-22066633)
[»] scaffold0131 (2 HSPs)
scaffold0131 (49-136)||(13405-13492)
scaffold0131 (158-229)||(13471-13542)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 32091794 - 32092007
Alignment:
Q  19 cataggtcatccttctgagcttatttgctttcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32091794 cataggtcatccttctgagcttatttgctttcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaa 32091893  T
Q  119 gaaaagctttctacattgtttctagtgaaagcaagtaataaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattag 218  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32091894 gaaaagctttctacattgtttctagtgaaagcaagttataaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattag 32091993  T
Q  219 attcctatctttta 232  Q
    ||||||||||||||    
T  32091994 attcctatctttta 32092007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 32092047 - 32092209
Alignment:
Q  209 tgtgaattagattcctatcttttacctgttatgcagatttgtttagagatatgctttgagtcaagtaccactccttgttgtcacaggtattaaattgtaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32092047 tgtgaattagattcctatcttttacctgttatgcagatttgtttagagatatgctttgagtcaagtaccactccttgttgtcacaggtattaaattgtaa 32092146  T
Q  309 cacaaaataccctatcagttttcannnnnnngatttgggcaattcaagttatac-aaatttta 370  Q
     |||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||    
T  32092147 aacaaaataccctatcagttttcatttttctgatttgggcaattcaagttatactaaatttta 32092209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 12287388 - 12287178
Alignment:
Q  21 taggtcatccttctgagcttatttgctttcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaaga 120  Q
    ||||| |||||||| | | |||||||||| |||||||||||||| || |||||||||| || ||||||| |||||| ||||||||||||||| | |||||    
T  12287388 taggttatccttcttatcatatttgctttgaatatttgctaaaatttcattctaataattgtggttattatttcaggttggggaaaacaagtaataaaga 12287289  T
Q  121 aaagctttctacattgtttctagtgaaagcaagtaataaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattagat 220  Q
    ||||||||||||||||| ||| |||||||||| | | |||| |||| ||||||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  12287288 aaagctttctacattgtctctggtgaaagcaaatca-aaaataaaatcttaatacattgcaaattggaaccaaaggtaggttctcttttgtgaattagat 12287190  T
Q  221 tcctatctttta 232  Q
    ||||||||||||    
T  12287189 tcctatctttta 12287178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 2269036 - 2269227
Alignment:
Q  40 tatttgctttcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaagaaaagctttctacattgttt 139  Q
    |||||||||| ||||||||||||||||| |||||||||| ||| |||||| |||||| ||||||||||||||| | ||||||||||||||| ||| || |    
T  2269036 tatttgcttttaatatttgctaaaaattcattctaataattgcagttattatttcaggttggggaaaacaagtaataaagaaaagctttcttcatggtct 2269135  T
Q  140 ctagtgaaagcaagtaataaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattagattcctatctttta 232  Q
    || |||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  2269136 ctggtgaaagcaagtaa-aaaagaaaatcttaatacattgcaaattggaaccaaaggtaggttctgttttgtgaattatattcctatctttta 2269227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 13579873 - 13579945
Alignment:
Q  241 gcagatttgtttagagatatgctttgagtcaagtaccactccttgttgtcacaggtattaaattgtaacacaa 313  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||  |||||||    
T  13579873 gcagatttgtttagagatatgctttgagccaagtaccactccttgtggtcacaggtattaaattcaaacacaa 13579945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 13585411 - 13585478
Alignment:
Q  237 ttatgcagatttgtttagagatatgctttgagtcaagtaccactccttgttgtcacaggtattaaatt 304  Q
    |||||||||| ||||| ||| ||| ||||||| ||||||||||||||||| ||||||||||| |||||    
T  13585411 ttatgcagatgtgttttgagttattctttgagccaagtaccactccttgtggtcacaggtatcaaatt 13585478  T

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Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 9392157 - 9391947
Alignment:
Q  19 cataggtcatccttctgagcttatttgctttcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaa 118  Q
    |||||||||||||||| | | |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |||||||||   |||    
T  9392157 cataggtcatccttcttatcatatttgcttttaatatttgctaaaaattcattctaataactgcggttattatttcaggttgggaaaaacaagtactaaa 9392058  T
Q  119 gaaaagctttctacattgtttctagtgaaagcaagtaataaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattag 218  Q
    ||||| |||||||| |||  |||||| |||| |||||| ||||||||| | ||||||||||||| || |||||||| ||||||| |||||||||||||||    
T  9392057 gaaaatctttctacgttg--tctagtaaaagaaagtaa-aaaagaaaatcataatacattgcaaatttgaaccaaaggtaggttctgttttgtgaattag 9391961  T
Q  219 attcctatctttta 232  Q
    |||||||| |||||    
T  9391960 attcctatttttta 9391947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 6632196 - 6632272
Alignment:
Q  229 tttacctgttatgcagatttgtttagagatatgctttgagtcaagtaccactccttgttgtcacaggtattaaattg 305  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6632196 tttacctgtcatgcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaattg 6632272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 36893467 - 36893544
Alignment:
Q  229 tttacctgttatgcagatttgtttagagatatgctttgagtcaagtaccactccttgttgtcacaggtattaaattgt 306  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||    
T  36893467 tttacctgttatgcagatttgtttagagatatgctttgagccaagtaccaccccttgttgtcacagatattaaattgt 36893544  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 19022757 - 19022693
Alignment:
Q  158 aaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattagattc 222  Q
    |||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||    
T  19022757 aaaagaaaagcttagtacattgcaacttggaaccaaaggtaggttctgttttgtgaattagattc 19022693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 22066633 - 22066569
Alignment:
Q  158 aaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattagattc 222  Q
    |||||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||    
T  22066633 aaaagaaaagcttagtacattgcaacttggaaccaaaggtaggttctgttttgtgaattagattc 22066569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 13405 - 13492
Alignment:
Q  49 tcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaagaaaagctttctacattg 136  Q
    ||||||||||||||||||| || ||||||||||| || ||| |||||| |||||||||||||||  ||||||||||||| ||| ||||    
T  13405 tcaatatttgctaaaaattcatactaataactgcagtcattatttcaggttggggaaaacaagtccaaaagaaaagcttactatattg 13492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 13471 - 13542
Alignment:
Q  158 aaaagaaaagcttaatacattgcaatttggaaccaaatgtaggttttgttttgtgaattagattcctatctt 229  Q
    |||||||||||||| || ||||||| ||||||||||| ||||||| ||||||||||| ||||||||| ||||    
T  13471 aaaagaaaagcttactatattgcaacttggaaccaaaggtaggttctgttttgtgaaatagattcctgtctt 13542  T

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