View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17135_high_6 (Length: 349)
Name: NF17135_high_6
Description: NF17135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17135_high_6 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 349
Target Start/End: Original strand, 36025131 - 36025470
Alignment:
| Q |
10 |
attattctgagaaacattgaagaaattaagactaggcagattgtcaaaggaaactggaatttctccactaagattattcagtgacaaatcaagctgtcta |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025131 |
attattatgagaaacattgaagaaattaagactaggcagattgtcaaaggaaactggaatttctccactaagattattcagtgacaaatcaagctgtcta |
36025230 |
T |
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| Q |
110 |
agcattgaaaggttcccaatactttgaggaatgtgaccactaaattggttatgacttagagaaatctctctaagttcccttaagttaactaaagaatcag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36025231 |
agcattgaaaggttcccaatactttgaggaatgtgaccactaaattggttatgacttagagaaatctctctaagttcccttaagttacctaaagaatcag |
36025330 |
T |
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| Q |
210 |
gaatactaccggtgaaaaagttatgatccaagataagattttgaagcctaaagaatccatttttcaagctaccaccccatgagttaggaatagaacctga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025331 |
gaatactaccggtgaaaaagttatgatccaagataagattttgaagcctaaagaatccatttttcaagctaccaccccatgagttaggaatagaacctga |
36025430 |
T |
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| Q |
310 |
gagattattatgttgaagagatatgaaagtgagagaattc |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
36025431 |
gagattattatgttgaagagatatgaaagtgagagaattc |
36025470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 36019129 - 36019423
Alignment:
| Q |
17 |
tgagaaacattgaagaaattaagactaggcagattgtcaaaggaaactggaatttctccactaagattattcagtgacaaatcaagctgtctaagcattg |
116 |
Q |
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||||||||||||||| | |||||||| | | | | |||||||||||| |||||||||||| |||||| || |||||| |||||| ||| |||| ||| |
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| T |
36019129 |
tgagaaacattgaagcatctaagactatgtcggtagacaaaggaaactgcaatttctccactgagattactcggtgacagatcaagttgtttaagatttg |
36019228 |
T |
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| Q |
117 |
aaaggttcccaatactttgaggaatgtgaccactaaattggttatgacttagagaaatctctctaagttcccttaagttaactaaagaatcaggaatact |
216 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || ||||||| |||||||| ||| |||||| |
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| T |
36019229 |
aaatatttccaatactttgaggaatgtgaccactaaattggttatgactaagagaaatctctct-agttaccgtaagttacctaaagaagcagaaatact |
36019327 |
T |
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| Q |
217 |
accggtgaaaaagttatgat-ccaagataagattttgaagcctaaagaatccatttttcaagctaccaccccatgagttaggaatagaacctgagag |
312 |
Q |
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| || || |||||||||| ||||| ||||||| |||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
36019328 |
tctagtcaagaagttatgatattaagat-agatttttaagcctaaagaatccagttttgaagctaccaccccgtgagttaggaatagaacctgagag |
36019423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 163 - 349
Target Start/End: Complemental strand, 19449887 - 19449695
Alignment:
| Q |
163 |
acttagagaaatctctctaagttcccttaagttaa-ctaaagaatcaggaatactaccggt---gaaaaagttatgatccaagataagattttgaagcct |
258 |
Q |
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|||| ||| |||| |||||||||||||||||| || |||||||| ||||||| || || || ||||| |||||||||| |||||||||||||||||| |
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| T |
19449887 |
actttgaggaatccctctaagttcccttaagtaaacctaaagaagcaggaatgcttccagtaaaaaaaaaattatgatccatgataagattttgaagcct |
19449788 |
T |
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| Q |
259 |
aaagaatccatttttcaagctaccaccccatgagttaggaataga--acctgagagattattatgttgaagagatatgaaagtgagagaattc |
349 |
Q |
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|||||||||||||| || ||||||||||| |||||||||||||| |||||||||||| || ||||||| ||| ||||||||| |||||||| |
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| T |
19449787 |
aaagaatccattttaaaatctaccaccccaggagttaggaatagatcacctgagagattgttgtgttgaaaagacatgaaagtgtgagaattc |
19449695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 230 - 349
Target Start/End: Original strand, 36013471 - 36013590
Alignment:
| Q |
230 |
ttatgatccaagataagattttgaagcctaaagaatccatttttcaagctaccaccccatgagttaggaatagaacctgagagattattatgttgaagag |
329 |
Q |
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|||||||| ||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||| ||||||||| |||| ||| | |||||||||||||||| |
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| T |
36013471 |
ttatgatcgaagataagattttgaagtctaaagaatacatatttgaagctaccaccccatgaattaggaatataacccgagtggttattatgttgaagag |
36013570 |
T |
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| Q |
330 |
atatgaaagtgagagaattc |
349 |
Q |
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||||||||||||||| |||| |
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| T |
36013571 |
atatgaaagtgagagcattc |
36013590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 36005608 - 36005712
Alignment:
| Q |
91 |
tgacaaatcaagctgtctaagcattgaaaggttcccaatactttgaggaatgtgaccactaaattggttatgacttagagaaatctctctaagttccctt |
190 |
Q |
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||||||||| ||||||||| ||||||||| ||| |||||||||||| |||||| |||||||||||||||||||| ||||||||| || |||||||||||| |
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| T |
36005608 |
tgacaaatcgagctgtctatgcattgaaatgtttccaatactttgacgaatgtaaccactaaattggttatgac-tagagaaatttccctaagttccctt |
36005706 |
T |
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| Q |
191 |
aagtta |
196 |
Q |
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|||||| |
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| T |
36005707 |
aagtta |
36005712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 36010601 - 36010745
Alignment:
| Q |
11 |
ttattctgagaaacattgaagaaattaagactaggcagattgtcaaaggaaactggaatttctccactaagattattcagtgacaaatcaagctgtctaa |
110 |
Q |
| |
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||||| ||||||||||||||| || |||||||| | || |||||||||||||||| ||||| ||||| |||||| || |||||||||||| ||| ||| |
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| T |
36010601 |
ttattatgagaaacattgaagcaactaagactatgtaggttgtcaaaggaaactgcaatttatccaccgagattactccgtgacaaatcaaattgtttaa |
36010700 |
T |
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| Q |
111 |
gcattgaaaggttcccaatactttgaggaatgtgaccactaaatt |
155 |
Q |
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| T |
36010701 |
gatttgaaatatttccaatactttaaggaatgtgaccactaaatt |
36010745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 227 - 349
Target Start/End: Original strand, 36010774 - 36010900
Alignment:
| Q |
227 |
aagttatgatccaagataagattttgaagcctaaagaatccatttttcaagctaccaccccatgagttaggaatagaacctgagag--att---attatg |
321 |
Q |
| |
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|||||||||| |||||| |||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||| ||| |||| | |
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| T |
36010774 |
aagttatgatttaagata-gattttgaagcctaaagaattcatttttgaagctacgaacccatgagttaggaatagaacctgagagttattgtaattaag |
36010872 |
T |
|
| Q |
322 |
ttgaagagatatgaaagtgagagaattc |
349 |
Q |
| |
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||||||||| ||||||||||||||||| |
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| T |
36010873 |
ttgaagagaagtgaaagtgagagaattc |
36010900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 19450011 - 19449876
Alignment:
| Q |
8 |
agattattctgagaaacattgaagaaattaagactaggcagattgtcaaaggaaactggaatttctccactaa--gattattcagtgacaaatcaagctg |
105 |
Q |
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|||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
19450011 |
agattattacgagaaacattaaagaaattaagactatatagattgtcaaaggtggttggaatttctccactaaaagattatttggtgacaaaagaagctc |
19449912 |
T |
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| Q |
106 |
tctaagcattgaaaggttcccaatactttgaggaat |
141 |
Q |
| |
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|||||||||||||| ||| || |||||||||||||| |
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| T |
19449911 |
tctaagcattgaaatgtttcctatactttgaggaat |
19449876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 22792012 - 22792145
Alignment:
| Q |
48 |
gattgtcaaaggaaactggaatttctccactaagattattcagt-gacaaatcaagctgtctaagcattgaaaggttcccaa-tactttgaggaatgtga |
145 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||||||| | || |||||||||||| ||| |||||| ||| |||| | |||||||||||||| |
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| T |
22792012 |
gattgtctaaggaagttggaatttctccactaagattattcgtttgagaaatcaagctgttgaagatttgaaatgtttccaaattttttgaggaatgtga |
22792111 |
T |
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| Q |
146 |
ccactaaattggttatgacttagagaaatctctc |
179 |
Q |
| |
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||||||||||||| |||||| || ||||||||| |
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| T |
22792112 |
ccactaaattggtgatgactatgaaaaatctctc |
22792145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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