View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17135_high_9 (Length: 299)
Name: NF17135_high_9
Description: NF17135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17135_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 78 - 280
Target Start/End: Original strand, 43950378 - 43950579
Alignment:
| Q |
78 |
aacagaatatggaaaattaatatatgaaattcaatctaggaagnnnnnnnnnnnnnnncctgtattctttgtaacgatcaaaggagtcgccactccaacc |
177 |
Q |
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| T |
43950378 |
aacagaatatggaaaattaatatatgaaattcaatataggaagaaaaagaaaaaaaa-cctgtattctttgtaacgatcaaaggagtcgccactccaacc |
43950476 |
T |
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| Q |
178 |
ttgagtcttatcggcggccataaccgaaaacgaaatcagacatagcaccacttcgcttattcggaatcctaacgcaaccttccctgccatcacatcactt |
277 |
Q |
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| T |
43950477 |
ttgagtcttatcggcggccataaccgaaaacgaaatcagacatagcaccacttcgcttattcggaatcctaacgcaaccttccctgtcatcacatcactt |
43950576 |
T |
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| Q |
278 |
ttc |
280 |
Q |
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| T |
43950577 |
ttc |
43950579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 35145692 - 35145784
Alignment:
| Q |
136 |
cctgtattctttgtaacgatcaaaggagtcgccactccaaccttgagtcttatcggcggccataaccgaaaacgaaatcagacatagcaccac |
228 |
Q |
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| T |
35145692 |
cctgtattctttataacgatcataagagtctccactccaaccttgcgtcttattcgcagccataactgaaaacgaaatcaaacaaaccaccac |
35145784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 46510181 - 46510240
Alignment:
| Q |
18 |
ggtgggtagtgctattcg---gtttcgtgttttgccattagtagtaaaaagtatttccca |
74 |
Q |
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| T |
46510181 |
ggtgggtagtgctattcgcaggtttcgtgttttgccattcgtagtaaaaagtatttccca |
46510240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 2555626 - 2555567
Alignment:
| Q |
18 |
ggtgggtagtgctattcg---gtttcgtgttttgccattagtagtaaaaagtatttccca |
74 |
Q |
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| T |
2555626 |
ggtgggtagtgctattcgcaggtttcgtgttttgccattcgtagtaaaaagtatttccca |
2555567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 41125715 - 41125657
Alignment:
| Q |
18 |
ggtgggtagtgctattcg---gtttcgtgttttgccattagtagtaaaaagtatttccc |
73 |
Q |
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| T |
41125715 |
ggtgggtaatgctattcgcaggtttcgtgttttgccattcgtagtaaaaaatatttccc |
41125657 |
T |
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