View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17135_low_17 (Length: 250)
Name: NF17135_low_17
Description: NF17135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17135_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42182758 - 42182516
Alignment:
| Q |
1 |
cttgttatattataccaatagtaaaaagaatcaaccaccaaaattaactttttcaggtaaggaagatagtgctgtttctaaataggagtaggggtaatga |
100 |
Q |
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| T |
42182758 |
cttgttatattatgccaatagtaaaaagaatcaaccaccaaaattaactttttcaggtaaggaagatagtgctgtttctaaataggagtaggggtaatga |
42182659 |
T |
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| Q |
101 |
aatgataatgaatatgatatgataatatat---agtatagtagtacagcaacaaaggctaggcttgaggcatgtaaagaagacaggtgttggaatggaga |
197 |
Q |
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| T |
42182658 |
aatgataatgcatatgatatggtaatatatagtagtatagtagtacagcaacaaaggctaggcttgaggcatgtaaagaagacaggtgttggaatggaga |
42182559 |
T |
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| Q |
198 |
gatttatgattgtgttatgggttgccgccattctcggcctttg |
240 |
Q |
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| T |
42182558 |
gatttatgattgtgttatgggttgccgccattctcggcctttg |
42182516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 17366217 - 17366146
Alignment:
| Q |
169 |
tgtaaagaagacaggtgttggaatggagagatttatgattgtgttatgggttgccgccattctcggcctttg |
240 |
Q |
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|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
17366217 |
tgtaaagaggacagatgttggaatggagagatttaagattgtgttatgggttgccgccattctcagcctttg |
17366146 |
T |
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