View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17135_low_18 (Length: 247)
Name: NF17135_low_18
Description: NF17135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17135_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 245
Target Start/End: Complemental strand, 40871016 - 40870792
Alignment:
| Q |
21 |
ttcctttgtgatcttctatgtttgaaagctacaattcccaaatgaaattaatatcaacaccaaaaatatagtatttagtcaattttcaatattaattcaa |
120 |
Q |
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| T |
40871016 |
ttcctttgtgatcttctatgtttgaaagctacaattcccaaatgaaattaatatcaacaccaaaaacatagtatttagtcaattttcaacattaattcaa |
40870917 |
T |
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| Q |
121 |
aatataaggtaatcctcacatataaatttgtattgactcctgcagtataacctggttgaagcttaaccgcagtaccaaaatatccagatttataagagtg |
220 |
Q |
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| T |
40870916 |
aatataaggtaatcctcacatataaatttgtattgactcctgcagtataacctggttgaagcttaaccgcagtaccaaaatatccagatttataagagtg |
40870817 |
T |
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| Q |
221 |
atatgacttgaatccactctctgtg |
245 |
Q |
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| T |
40870816 |
atatgacttgaatccactccctgtg |
40870792 |
T |
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Back To:
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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 21085410 - 21085492
Alignment:
| Q |
156 |
actcctgcagtataacctggttgaagcttaaccgcagtaccaaaatatccagatttataagagtgatatgacttgaatccact |
238 |
Q |
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| T |
21085410 |
actccagcagtatagccaggatgaagcttaattgcagcaccaaagtatccggatttataagaatgaagtgacttgaatccact |
21085492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 43100011 - 43100057
Alignment:
| Q |
39 |
tgtttgaaagctacaattcccaaatgaaattaatatcaacaccaaaaat |
87 |
Q |
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| T |
43100011 |
tgtttgaaagctacaatttccaaatgaaat--atataaacaccaaaaat |
43100057 |
T |
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