View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17135_low_3 (Length: 452)
Name: NF17135_low_3
Description: NF17135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17135_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 116 - 445
Target Start/End: Complemental strand, 38847159 - 38846827
Alignment:
| Q |
116 |
gatagagcattatggggtcgttagatccatatatccgacgccactcagtgagacaatgcttgatagtctgttattatttgtttatttgatatgaatcgtg |
215 |
Q |
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| T |
38847159 |
gatagatcattatggggtcgttagatccatatatccgacgccactcagtgagacaatgcttgatagtctgttatcatttgtttatttgatatgaatcatg |
38847060 |
T |
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| Q |
216 |
tgttttgtgttttgttacagtcgactagtattatgtttacatattgttagttgttccctgtttgattgattgatacaatgatattgagtact-ataattt |
314 |
Q |
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| T |
38847059 |
tgttttgtgttttgttacagtcgactagtattatgtttacatattgttagttgttccctgtttgattgattgatacaatgatattgagtactaataatct |
38846960 |
T |
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| Q |
315 |
actaaaaacagttaattaattagatttctatagtttaaatttgaaatgtgtgt------aatttggattgttgtggtgattagggtggtgccaagaaggt |
408 |
Q |
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| T |
38846959 |
actaaaaacag----ttgattagatttctatagtttaaatttgaaatgtgtgtaatttgaatttggattgttgtggtgattagggtggtgccaagaaggt |
38846864 |
T |
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| Q |
409 |
tgtcatttctgctcccagcaaagatgcacctatgttt |
445 |
Q |
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| T |
38846863 |
tgtcatttctgctcccagcaaagatgcacctatgttt |
38846827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 38847255 - 38847211
Alignment:
| Q |
20 |
gtgttttcactgacaaggataaagctgctgctcacttgaaggttc |
64 |
Q |
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| T |
38847255 |
gtgttttcactgacaaggataaagctgctgctcacttgaaggttc |
38847211 |
T |
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