View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17135_low_5 (Length: 358)
Name: NF17135_low_5
Description: NF17135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17135_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 42183362 - 42183032
Alignment:
| Q |
15 |
agtacttgtaaatcatagcttgtctttcaagctctctccattgagcacttgtgaaaggaggataccctattcctattgaagccgccattccacctgctgt |
114 |
Q |
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| T |
42183362 |
agtacttgtaaatcatagcttgtctttcaagctctctccattgagcacttgtgaaaggaggataccctattcctattgaagccgccattccacctgctgt |
42183263 |
T |
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| Q |
115 |
gacaacaacaaacacaagtatgttcagacttcagaaacttgtacagaacnnnnnnngttctgatcactacttatttttctatatattattgattgatgga |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
42183262 |
gacaaccacaaacacaagtatgttcagacttcagaaacttgtacagaactttttttgttctgaccactacttatgtttctatatattattgattgatgga |
42183163 |
T |
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| Q |
215 |
aaacaataagaaataaacacaaattaacctttgagggttgtgttggaggcagaaatgttgtgaaaaggttgaaaatttaaggatacaccgccattatcaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42183162 |
aaacaataagaaataaacacaaattaacctttgagggttgtgttggaggcagaaatgttgtgaaaaggttgaaaatttaaggatacaccaccattatcaa |
42183063 |
T |
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| Q |
315 |
tgatagcattagcacctagagcagaataatc |
345 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
42183062 |
tgatagcattagcacctagagcagaagaatc |
42183032 |
T |
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