View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17136_low_1 (Length: 309)
Name: NF17136_low_1
Description: NF17136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17136_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 24 - 295
Target Start/End: Original strand, 7332672 - 7332943
Alignment:
| Q |
24 |
gaggcataatattctgcaatttgaaagcattgtactgttcccagaccacctttgcatataggaagggaatgtccgtgaatctctaaaagcttcccagcga |
123 |
Q |
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| T |
7332672 |
gaggcataatattctgcaatttgaaagcattgtactgttcccagaccacctttgcatatagaaagggaatatccgtgaatctctaaaagcttcccagcga |
7332771 |
T |
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| Q |
124 |
attcatgatcaacaacgagtgatttccacaacttgcaaacgcacctcaattgcagagtattatcaattctataaaggatttcaatcaacaattcctctgg |
223 |
Q |
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| T |
7332772 |
attcatgatcaacaacgagtgatttccacaacttgcaaacgcacctcaattgcagagtattatcaattctataaaagatttcaatcaacaattcctctgg |
7332871 |
T |
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| Q |
224 |
gactactgagatcgctgactccgccgtctcttccgccgtcatcgccgtagttagggtcggtatgtgtctccc |
295 |
Q |
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| T |
7332872 |
gactactgagatcggtgactccgccgtctcttccgccgtcatcgccgtagttagggtcggtatgtgtctccc |
7332943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 7323252 - 7323316
Alignment:
| Q |
120 |
gcgaattcatgatcaacaacgagtgatttccacaacttgcaaacgcacctcaattgcagagtatt |
184 |
Q |
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| T |
7323252 |
gcgaattgaggatcaagaactagcgaattccacaagttgcaaacgcacctcaattgcagagtatt |
7323316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 7370907 - 7370944
Alignment:
| Q |
147 |
ttccacaacttgcaaacgcacctcaattgcagagtatt |
184 |
Q |
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| T |
7370907 |
ttccacaacttgcaaacacacctcaattgcagagtatt |
7370944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 7375694 - 7375743
Alignment:
| Q |
130 |
gatcaacaacgagtgatttccacaacttgcaaacgcacctcaattgcaga |
179 |
Q |
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| T |
7375694 |
gatcaacaaccagcgaattccacaacttgcaaacgcatctcaattgcaga |
7375743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 7908120 - 7908071
Alignment:
| Q |
130 |
gatcaacaacgagtgatttccacaacttgcaaacgcacctcaattgcaga |
179 |
Q |
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| T |
7908120 |
gatcaagaacaagtgatttccaccacttgcatacgcacctcaattgcaga |
7908071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 6828729 - 6828642
Alignment:
| Q |
144 |
gatttccacaacttgcaaacgcacctcaattgcagagta-ttatcaatt-----ctataaaggatttcaatcaacaattcctctggga |
225 |
Q |
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| T |
6828729 |
gatttccacaatttgcaaacacacctcaattgcagagtactgttcaattcaaccctataaaggatttcaatcatcacttcctccggga |
6828642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 7342220 - 7342307
Alignment:
| Q |
144 |
gatttccacaacttgcaaacgcacctcaattgcagagta----tt--atcaattctataaaggatttcaatcaacaattcctctggga |
225 |
Q |
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| T |
7342220 |
gatttccacaacttggaaacgcacctcagttgcagagtaacgcttgactcaaccctagaaaggatttcaatcatcaattcctctggga |
7342307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 30411864 - 30411909
Alignment:
| Q |
127 |
catgatcaacaacgagtgatttccacaacttgcaaacgcacctcaa |
172 |
Q |
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| T |
30411864 |
catgatcaacaactagtgatttccacaacttacaaatgcacctcaa |
30411909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 13246188 - 13246250
Alignment:
| Q |
122 |
gaattcatgatcaacaacgagtgatttccacaacttgcaaacgcacctcaattgcagagtatt |
184 |
Q |
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| T |
13246188 |
gaattcaggatcaacaaccagcgatttctatgacttgcaaacgcaccttaattggagagtatt |
13246250 |
T |
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