View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17137_low_1 (Length: 307)

Name: NF17137_low_1
Description: NF17137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17137_low_1
NF17137_low_1
[»] chr6 (1 HSPs)
chr6 (13-292)||(34902385-34902666)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 34902385 - 34902666
Alignment:
Q  13 aaggaaattaatacaaaaaattct--aattaaggaggcaaagtaaaagaaccggaaccaggttgtttaagagggactttgacaacttctttaacacctct 110  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34902385 aaggaaattaatacaaaaaattctctaattaaggaggcaaagtaaaagaaccggaaccaggttgtttaagagggactttgacaacttctttaacacctct 34902484  T
Q  111 tacaatccctacatcttcatccaatgtgaacaaatcttctgtttctctcaacacagcatgaatcaacacaacacctagggcaaaacacataccaacttcc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34902485 tacaatccctacatcttcatccaatgtgaacaaatcttctgtttctctcaacacagcatgaatcaacacaacacctagggcaaaacacataccaacttcc 34902584  T
Q  211 acattatgtgttacatccgttagaacaagcaaaccgccggtgatcgacaacaaagatataaccacatatctctcatcaattt 292  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34902585 acattatgtgttacatccgttagaacgagcaaaccggcggtgatcgacaacaaagatataaccacatatctctcatcaattt 34902666  T

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