View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17137_low_3 (Length: 250)
Name: NF17137_low_3
Description: NF17137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17137_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 32542572 - 32542806
Alignment:
| Q |
1 |
caagggtaagaattacaatttgttatttatcttagacttatgtgacctttctttacgtctttatataatcaaagctctaaatcgcattttcatggtatta |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32542572 |
caagggtaagaatcacaatttgttattcatcctagacttctgtgacctttctttacatctttatataatcaaagctctaaatcgcattttcatggtattg |
32542671 |
T |
|
| Q |
101 |
cagagaatcatgatcaaattcagttgacgtggtcccaattgcaattttgctataaagtgataacaaatttaataccatagatttagattgcattcgttag |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32542672 |
cagagaatcatgatcaaattcagctgacgtggccccaattgcaattttgctataaagtgataacaaatttaataccatagatttagattgcattcgttag |
32542771 |
T |
|
| Q |
201 |
cctcaatgtttatgttatttttgcgactgctattg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
32542772 |
cctcaatgtttatgttatttttgcgactgctattg |
32542806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University