View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17138_low_1 (Length: 309)
Name: NF17138_low_1
Description: NF17138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17138_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 67 - 273
Target Start/End: Complemental strand, 41350509 - 41350303
Alignment:
| Q |
67 |
ttgtacttttaatcttacattttctttatttgatttgggaattgaaatgcagatgggctcacattgcaagccacttacctggtagaacagacaatgaaat |
166 |
Q |
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| T |
41350509 |
ttgtacttttaatcttacattttctttatttgatttgggaattgaaatgcagatgggctcacattgcaagccacttacctggtagaacagacaatgaaat |
41350410 |
T |
|
| Q |
167 |
aaagaattactggaattcttggatcaaaaagaaaataagaaagcattcatcaagctctaattcaaccaccaataatgttacacaaaatgttgttcatcat |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41350409 |
aaagaattactggaattcttggatcaaaaagaaaataagaaagcattcatcaagctctaattcaaccaccaataatgttacacaaaatgttgttcatcat |
41350310 |
T |
|
| Q |
267 |
tcccacc |
273 |
Q |
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||||||| |
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| T |
41350309 |
tcccacc |
41350303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 41347439 - 41347478
Alignment:
| Q |
270 |
caccactaattaaaattaatcactcctaaaaatattgtat |
309 |
Q |
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| T |
41347439 |
caccactaattaaaattaatcactcctaaaaatattgtat |
41347478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 41350569 - 41350536
Alignment:
| Q |
17 |
agagattaggtttctatggcttgacataaagcgt |
50 |
Q |
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| T |
41350569 |
agagattaggtttctatggcttgacataaagcgt |
41350536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 5948292 - 5948239
Alignment:
| Q |
116 |
cagatgggctcacattgcaagccacttacctggtagaacagacaatgaaataaa |
169 |
Q |
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| T |
5948292 |
cagatgggctcaaattgcaaagcacttacctggaagaacagataatgagataaa |
5948239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 2591561 - 2591658
Alignment:
| Q |
112 |
aatgcagatgggctcacattgcaagccacttacctggtagaacagacaatgaaataaagaattactggaattcttggatcaaaaagaaaataagaaag |
209 |
Q |
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| T |
2591561 |
aatgcagatgggctcacattgcaagtcacttgcctggtagaacagacaatgaaataaaaaactattggaattcatggatcaaaaagaaaattagaaag |
2591658 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 20732661 - 20732621
Alignment:
| Q |
141 |
ttacctggtagaacagacaatgaaataaagaattactggaa |
181 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||| |
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| T |
20732661 |
ttacctggaagaacagacaatgaaataaagaactactggaa |
20732621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 20740397 - 20740357
Alignment:
| Q |
141 |
ttacctggtagaacagacaatgaaataaagaattactggaa |
181 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||| |
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| T |
20740397 |
ttacctggaagaacagacaatgaaataaagaactactggaa |
20740357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 17118286 - 17118247
Alignment:
| Q |
141 |
ttacctggtagaacagacaatgaaataaagaattactgga |
180 |
Q |
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||||| || ||||||||||||||||||||||||||||||| |
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| T |
17118286 |
ttaccaggaagaacagacaatgaaataaagaattactgga |
17118247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 37881368 - 37881328
Alignment:
| Q |
141 |
ttacctggtagaacagacaatgaaataaagaattactggaa |
181 |
Q |
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||||| || ||||||||||||||||||||||| |||||||| |
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| T |
37881368 |
ttacccggaagaacagacaatgaaataaagaactactggaa |
37881328 |
T |
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