View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17139_high_15 (Length: 219)
Name: NF17139_high_15
Description: NF17139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17139_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 45199788 - 45199601
Alignment:
| Q |
18 |
agatggaaggtggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtcttttg |
117 |
Q |
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| T |
45199788 |
agatggaaggtggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtcttttg |
45199689 |
T |
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| Q |
118 |
gacggagatcctcttaagattgatcaatctgcactcactggtgagtccttgccaacaaccaagaaccctggtgatgaagtcttctctg |
205 |
Q |
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| T |
45199688 |
gacggagatcctcttaagattgatcaatctgcactcactggtgagtccttgccaacaaccaagaaccctggtgatgaagtcttctctg |
45199601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 21982880 - 21982694
Alignment:
| Q |
19 |
gatggaaggtggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtcttttgg |
118 |
Q |
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| T |
21982880 |
gatggaaaatggagtgagcaagaggcagaaattttggtgccgggagatgtgatcagtatcaagttgggagacattgtcccagctgatgcccgtcttttgg |
21982781 |
T |
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| Q |
119 |
acggagatcctcttaagattgatcaatctgcactcactggtgagtccttgccaacaaccaagaaccctggtgatgaagtcttctctg |
205 |
Q |
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| T |
21982780 |
aaggagatcccttaaagattgaccagtctgcccttactggtgagtccttgccagtaacaaggaaccctggtcaagaggtcttctctg |
21982694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 48439347 - 48439161
Alignment:
| Q |
19 |
gatggaaggtggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtcttttgg |
118 |
Q |
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| T |
48439347 |
gatggaaaatggactgaacaagaggcggcaattttagtgccaggagatttagtgagcataaagctgggagacattgtcccagctgatgctcgcctcttgg |
48439248 |
T |
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| Q |
119 |
acggagatcctcttaagattgatcaatctgcactcactggtgagtccttgccaacaaccaagaaccctggtgatgaagtcttctctg |
205 |
Q |
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| T |
48439247 |
aaggagatgcccttaagattgaccaatctgcactcactggtgagtcacttccagttaccaagaaccctggtgatgaagtcttctctg |
48439161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 26787999 - 26788085
Alignment:
| Q |
28 |
tggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtctt |
114 |
Q |
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| T |
26787999 |
tggagtgagcaagatgctgcaattttagtaccaggagacattatcagcatcaagttaggagacatcatcccagccgacgctcgtctt |
26788085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 1498906 - 1498805
Alignment:
| Q |
28 |
tggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtcttttggacggagatc |
127 |
Q |
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|||| ||| ||||| ||||| || || ||||||||||| |||||||||||||| |||||||| || |||||||| || || |||||| | || ||||||| |
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| T |
1498906 |
tggagtgaacaagatgctgcaattttagtaccaggagacataatcagcatcaagttaggagatattgttccagctgatgcgcgtcttcttgagggagatc |
1498807 |
T |
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| Q |
128 |
ct |
129 |
Q |
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|| |
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| T |
1498806 |
ct |
1498805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 1460430 - 1460516
Alignment:
| Q |
28 |
tggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtctt |
114 |
Q |
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| T |
1460430 |
tggagtgaacaagatgctgcaattttagtaccaggagacataatcagcattaagttaggagacatcatcccagctgatgcgcgtctt |
1460516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 50274237 - 50274332
Alignment:
| Q |
18 |
agatggaaggtggactgagcaagaggctgctatattggtaccaggagatataatcagcatcaaattaggagacatcgttccagccgacgctcgtct |
113 |
Q |
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| T |
50274237 |
agatggtaggtggtctgaagaagatgctgcaattttggtcccaggtgatatcatcagcattaaattaggagatatcattcctgctgatgctcgtct |
50274332 |
T |
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