View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17139_high_6 (Length: 344)
Name: NF17139_high_6
Description: NF17139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17139_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 35278757 - 35279082
Alignment:
| Q |
18 |
atttgaggggtagagttgattatttgcggggcctgaaatttagtaatgtatgaatagatttgattatttagcactgtgaaaccaagaaccatgaattaac |
117 |
Q |
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| T |
35278757 |
atttgacgggtagagttgattatttgcggggcctgaaatttagtaatgtatgaatagatttgattatttagcactgtgaaaccaagaaccatgaattaac |
35278856 |
T |
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| Q |
118 |
attaattgaaccatcatatataacctgactctgacttgaggatcctagagtgagttgagtctgttgccttctactccaaatgtcggacaagattccacgt |
217 |
Q |
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| T |
35278857 |
attaattgaaccatcatatataacctgactctgacttgaggatcctagagtgagttgagtctgttgccttatactccaaatgtcggacaagattccacgt |
35278956 |
T |
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| Q |
218 |
gggtgttgatcgaattctaaaaattcagttaaataatcagtcaaagtaatgaatgatattagaagaaagaaaagaatatgcagaagatctgaatatgtat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35278957 |
gggtgttgatcgaattctaaaaattcagttaaataatcagtcaaagaaatgaatgatattagaagaaagaaaagaatatgcagaagatctgaatatgtat |
35279056 |
T |
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| Q |
318 |
ccgttgttatcaccatcaccctttgc |
343 |
Q |
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| T |
35279057 |
ccgttgttatcaccatcaccctttgc |
35279082 |
T |
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