View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17139_low_1 (Length: 496)

Name: NF17139_low_1
Description: NF17139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17139_low_1
NF17139_low_1
[»] chr8 (26 HSPs)
chr8 (1-479)||(44858946-44859426)
chr8 (121-303)||(30426622-30426804)
chr8 (121-300)||(36991296-36991475)
chr8 (121-300)||(28069659-28069838)
chr8 (179-300)||(10652573-10652694)
chr8 (178-301)||(10672469-10672590)
chr8 (121-276)||(41511202-41511357)
chr8 (118-298)||(28318854-28319040)
chr8 (178-300)||(40695204-40695325)
chr8 (178-295)||(6014191-6014309)
chr8 (178-300)||(45113267-45113390)
chr8 (121-264)||(24101956-24102099)
chr8 (178-261)||(26749543-26749626)
chr8 (239-300)||(5033310-5033371)
chr8 (178-300)||(37966400-37966520)
chr8 (189-261)||(17867654-17867727)
chr8 (179-251)||(34612562-34612634)
chr8 (178-293)||(42761710-42761825)
chr8 (205-247)||(5033108-5033150)
chr8 (212-265)||(12177572-12177625)
chr8 (212-265)||(12422000-12422053)
chr8 (178-261)||(1937149-1937233)
chr8 (178-248)||(6399921-6399991)
chr8 (184-254)||(36748494-36748563)
chr8 (185-254)||(21360280-21360349)
chr8 (189-261)||(30904969-30905042)
[»] chr5 (30 HSPs)
chr5 (118-300)||(37266668-37266850)
chr5 (132-300)||(35660565-35660733)
chr5 (121-301)||(18625376-18625556)
chr5 (121-300)||(14349744-14349922)
chr5 (130-292)||(4895699-4895861)
chr5 (178-297)||(11775790-11775909)
chr5 (121-300)||(13032059-13032237)
chr5 (130-300)||(32129573-32129743)
chr5 (121-301)||(39902355-39902535)
chr5 (130-300)||(40753118-40753288)
chr5 (178-302)||(34827189-34827313)
chr5 (186-298)||(43309113-43309225)
chr5 (178-284)||(8440943-8441049)
chr5 (185-300)||(29340999-29341113)
chr5 (178-261)||(36290599-36290682)
chr5 (184-300)||(3057419-3057534)
chr5 (178-239)||(4592797-4592858)
chr5 (124-276)||(32793317-32793468)
chr5 (130-277)||(3057134-3057280)
chr5 (184-248)||(43222129-43222193)
chr5 (178-261)||(41660103-41660186)
chr5 (178-254)||(2984392-2984468)
chr5 (121-201)||(1475693-1475773)
chr5 (205-276)||(18653385-18653455)
chr5 (236-293)||(9460599-9460655)
chr5 (178-261)||(3041302-3041386)
chr5 (188-260)||(27428877-27428949)
chr5 (226-302)||(31653080-31653155)
chr5 (189-254)||(40162737-40162803)
chr5 (228-273)||(1475638-1475683)
[»] chr4 (45 HSPs)
chr4 (131-302)||(19901872-19902043)
chr4 (121-302)||(3952124-3952305)
chr4 (131-300)||(56558229-56558398)
chr4 (130-300)||(23610591-23610761)
chr4 (121-299)||(34778361-34778539)
chr4 (178-303)||(5416419-5416543)
chr4 (130-300)||(5763118-5763288)
chr4 (178-300)||(33247086-33247208)
chr4 (131-301)||(18206995-18207165)
chr4 (178-300)||(12312431-12312554)
chr4 (130-300)||(38079676-38079846)
chr4 (182-300)||(24073617-24073735)
chr4 (178-284)||(30567898-30568004)
chr4 (131-300)||(33262508-33262677)
chr4 (132-300)||(39862468-39862636)
chr4 (212-300)||(12153185-12153273)
chr4 (178-295)||(47922327-47922445)
chr4 (229-302)||(52018811-52018884)
chr4 (179-261)||(56269071-56269153)
chr4 (121-300)||(47922035-47922210)
chr4 (232-301)||(33524313-33524382)
chr4 (185-300)||(23474115-23474229)
chr4 (178-260)||(56453816-56453898)
chr4 (121-223)||(12241441-12241543)
chr4 (184-261)||(36688183-36688260)
chr4 (178-261)||(5524444-5524527)
chr4 (206-291)||(34927510-34927596)
chr4 (184-293)||(1871280-1871388)
chr4 (178-261)||(37002246-37002329)
chr4 (178-261)||(42010114-42010197)
chr4 (184-273)||(26428971-26429061)
chr4 (189-261)||(17493010-17493083)
chr4 (189-261)||(32146510-32146583)
chr4 (189-261)||(46238974-46239047)
chr4 (189-261)||(53526096-53526169)
chr4 (189-261)||(55160365-55160438)
chr4 (189-254)||(25219003-25219070)
chr4 (179-261)||(1015849-1015931)
chr4 (178-240)||(25442190-25442252)
chr4 (189-261)||(17317215-17317287)
chr4 (178-230)||(31862246-31862298)
chr4 (230-293)||(33841768-33841830)
chr4 (178-248)||(48084533-48084603)
chr4 (212-261)||(5361457-5361506)
chr4 (178-254)||(42844189-42844265)
[»] chr3 (25 HSPs)
chr3 (121-302)||(27033591-27033772)
chr3 (131-302)||(2229933-2230104)
chr3 (121-301)||(19830386-19830567)
chr3 (121-301)||(43719902-43720082)
chr3 (121-301)||(34373771-34373951)
chr3 (178-297)||(46167390-46167509)
chr3 (130-298)||(40851722-40851891)
chr3 (204-300)||(24754680-24754776)
chr3 (204-300)||(24763677-24763773)
chr3 (178-282)||(34373559-34373663)
chr3 (178-300)||(48084816-48084939)
chr3 (103-276)||(12402883-12403061)
chr3 (178-261)||(31523663-31523746)
chr3 (178-283)||(550790-550894)
chr3 (178-261)||(42613077-42613160)
chr3 (178-261)||(49679265-49679348)
chr3 (248-302)||(24647905-24647959)
chr3 (178-303)||(1995441-1995566)
chr3 (178-284)||(566746-566852)
chr3 (185-300)||(29586340-29586454)
chr3 (226-293)||(30235418-30235484)
chr3 (185-300)||(33632827-33632940)
chr3 (178-254)||(40810357-40810434)
chr3 (212-300)||(3009253-3009339)
chr3 (186-294)||(28229365-28229472)
[»] chr2 (27 HSPs)
chr2 (118-300)||(35316762-35316944)
chr2 (131-297)||(13238631-13238797)
chr2 (121-300)||(28564831-28565011)
chr2 (178-300)||(23259443-23259565)
chr2 (181-301)||(2063353-2063473)
chr2 (212-300)||(45625035-45625123)
chr2 (225-300)||(11864913-11864988)
chr2 (186-254)||(30709115-30709183)
chr2 (178-261)||(8988852-8988935)
chr2 (178-261)||(374990-375073)
chr2 (178-300)||(19908777-19908897)
chr2 (218-294)||(40640706-40640783)
chr2 (178-261)||(23459841-23459924)
chr2 (189-261)||(13780506-13780579)
chr2 (178-277)||(21454475-21454572)
chr2 (178-292)||(4446860-4446974)
chr2 (184-293)||(30857642-30857750)
chr2 (189-261)||(40254144-40254217)
chr2 (185-289)||(36929720-36929823)
chr2 (217-300)||(38824061-38824145)
chr2 (189-261)||(3594865-3594938)
chr2 (189-261)||(6288050-6288125)
chr2 (178-261)||(29188650-29188734)
chr2 (185-300)||(38397085-38397199)
chr2 (220-282)||(19905920-19905981)
chr2 (189-254)||(41435205-41435271)
chr2 (232-301)||(36758817-36758885)
[»] chr1 (30 HSPs)
chr1 (118-300)||(50294019-50294201)
chr1 (121-300)||(50484326-50484505)
chr1 (121-300)||(12151707-12151886)
chr1 (178-300)||(48327110-48327231)
chr1 (178-301)||(23861907-23862033)
chr1 (207-302)||(7840633-7840728)
chr1 (226-300)||(12380833-12380907)
chr1 (226-300)||(12384900-12384974)
chr1 (121-296)||(40328216-40328390)
chr1 (217-300)||(45978041-45978124)
chr1 (184-300)||(18976260-18976377)
chr1 (186-299)||(32361264-32361377)
chr1 (121-242)||(12380924-12381045)
chr1 (121-242)||(12384991-12385112)
chr1 (178-261)||(52280034-52280117)
chr1 (233-300)||(1228496-1228563)
chr1 (178-284)||(39426207-39426313)
chr1 (178-251)||(24977237-24977310)
chr1 (178-250)||(26860056-26860128)
chr1 (231-299)||(30860726-30860794)
chr1 (189-261)||(6948825-6948899)
chr1 (178-261)||(30077639-30077722)
chr1 (189-261)||(18107316-18107389)
chr1 (184-261)||(46045690-46045767)
chr1 (184-260)||(5047377-5047453)
chr1 (184-247)||(24413291-24413354)
chr1 (178-223)||(46608410-46608455)
chr1 (225-301)||(30210665-30210740)
chr1 (185-300)||(32618805-32618918)
chr1 (178-250)||(26372249-26372321)
[»] scaffold0012 (1 HSPs)
scaffold0012 (121-300)||(208003-208182)
[»] chr6 (27 HSPs)
chr6 (130-300)||(4804397-4804567)
chr6 (118-300)||(7162021-7162203)
chr6 (120-300)||(17944101-17944281)
chr6 (178-300)||(13089705-13089827)
chr6 (130-300)||(21159325-21159495)
chr6 (121-299)||(1249105-1249281)
chr6 (178-300)||(12412634-12412756)
chr6 (178-297)||(27826535-27826654)
chr6 (178-297)||(227522-227642)
chr6 (219-303)||(32737895-32737979)
chr6 (178-301)||(13888477-13888601)
chr6 (178-261)||(24484876-24484959)
chr6 (185-292)||(7215816-7215923)
chr6 (185-301)||(17828524-17828639)
chr6 (121-238)||(29698103-29698220)
chr6 (212-300)||(1516163-1516250)
chr6 (212-300)||(1518252-1518339)
chr6 (178-293)||(2800574-2800689)
chr6 (189-261)||(7098190-7098263)
chr6 (189-261)||(7545645-7545718)
chr6 (178-261)||(2142288-2142371)
chr6 (225-301)||(1515497-1515572)
chr6 (236-292)||(29229149-29229204)
chr6 (221-276)||(30460864-30460918)
chr6 (184-250)||(12734413-12734478)
chr6 (231-284)||(28696628-28696680)
chr6 (178-254)||(32254033-32254109)
[»] chr7 (35 HSPs)
chr7 (121-301)||(21151092-21151272)
chr7 (131-301)||(9559009-9559179)
chr7 (121-299)||(45260384-45260562)
chr7 (121-300)||(16366458-16366637)
chr7 (131-300)||(4888417-4888586)
chr7 (178-300)||(12139323-12139446)
chr7 (121-300)||(7362508-7362686)
chr7 (121-265)||(25084719-25084863)
chr7 (178-300)||(18198253-18198375)
chr7 (178-300)||(44647959-44648083)
chr7 (178-297)||(47226035-47226152)
chr7 (178-300)||(33450503-33450626)
chr7 (178-300)||(47500238-47500361)
chr7 (178-301)||(39855769-39855891)
chr7 (178-261)||(47799895-47799978)
chr7 (178-292)||(34985909-34986024)
chr7 (184-292)||(989132-989239)
chr7 (179-282)||(32915954-32916056)
chr7 (225-297)||(47271107-47271178)
chr7 (178-261)||(30588532-30588615)
chr7 (189-254)||(19027685-19027751)
chr7 (189-254)||(20726885-20726951)
chr7 (184-301)||(29631051-29631165)
chr7 (189-261)||(14696752-14696825)
chr7 (184-251)||(46802336-46802403)
chr7 (189-261)||(30102501-30102574)
chr7 (231-284)||(33608849-33608901)
chr7 (186-302)||(7373872-7373987)
chr7 (186-261)||(47080433-47080509)
chr7 (179-261)||(28528549-28528631)
chr7 (178-248)||(32916166-32916236)
chr7 (206-254)||(29844316-29844364)
chr7 (178-261)||(19889029-19889112)
chr7 (204-261)||(35737136-35737193)
chr7 (189-261)||(4269187-4269257)
[»] scaffold0035 (1 HSPs)
scaffold0035 (178-300)||(16353-16475)
[»] scaffold0250 (1 HSPs)
scaffold0250 (121-300)||(7087-7270)
[»] scaffold0008 (1 HSPs)
scaffold0008 (181-302)||(9155-9276)
[»] scaffold0009 (1 HSPs)
scaffold0009 (132-295)||(6396-6559)
[»] scaffold0006 (1 HSPs)
scaffold0006 (217-296)||(73817-73896)
[»] scaffold0456 (1 HSPs)
scaffold0456 (212-300)||(13710-13799)
[»] scaffold0126 (1 HSPs)
scaffold0126 (178-301)||(22398-22520)
[»] scaffold0171 (1 HSPs)
scaffold0171 (178-251)||(17311-17384)
[»] scaffold0664 (1 HSPs)
scaffold0664 (189-261)||(4695-4768)


Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 44859426 - 44858946
Alignment:
Q  1 caaaggtaaggatgtaaatagatgattaagttgagttacgcttagtaacnnnnnnnaagtagatagatccacttagaccacaccacacaaggtgagatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  44859426 caaaggtaaggatgtaaatagatgattaagttgagttacgcttagtaactttttttaagtagatagatccacttagaccacaccacacaaggtgagatga 44859327  T
Q  101 ttgggttaggatctctc----tacgtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatg 196  Q
    |||||||||||||||||    ||||||||||| | ||||||||||||| ||||||||||||||||||||| |||       |||||||||||||||||||    
T  44859326 ttgggttaggatctctccatttacgtgtttttccttttctttaatttggagagataaagacacgtgaaattttttaaaaaataaaatataattaatgatg 44859227  T
Q  197 gtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttc 296  Q
    |||||  |||||||||||||| ||||| ||||||||||| ||  ||||||||||| ||||||||||||||||||||||||  |||||  |||||||||||    
T  44859226 gtgggacccacttagtggtagaacccaccatctatttttagt--ctatctctctctaacttgcaaaactccatttattttgtcaaatagagaggatcttc 44859129  T
Q  297 acccatgatgattacattacattatatcaccaattaattaattgctttcatgtgcaattatacaccgatgtctttaacttcaaatggaatggattaattc 396  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44859128 atctatgatgattacattacattatatcaccaattaattaattgctttcatgtgcaattatacaccgatgtctttaacttcaaatggaatggattaattc 44859029  T
Q  397 atgtagcnnnnnnnattcaaacctaagaaatgaaactacaatatgccttaatcatcacacacatggaatccaatatcgctact 479  Q
    |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44859028 atgtagctttttttattcaaacctaagaaatgaaactacaatatgccttaatcatcacacacatggaatccaatatcgctact 44858946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 121 - 303
Target Start/End: Complemental strand, 30426804 - 30426622
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||||| |||||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  |||||||||||||||||    
T  30426804 gtgtttttccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggac 30426705  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacccatg 303  Q
    ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||    
T  30426704 ccaccatctattttttgtgtctatctctctccaacttgcaaaacaccatttattttgccaaatggagagggtcttcacccatg 30426622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 36991296 - 36991475
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||||| |||||||        | ||||||||||||||||||||||  |||||||||||||||||    
T  36991296 gtgtttctccatttcttcaatttggagagataaagacacgtaaaatcttgaaaaaagtcaaatataattaatgatggtgggacccacttagtggtaggac 36991395  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  36991396 ccatcatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 36991475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 28069659 - 28069838
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    ||||||||  |||||||  ||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  |||||||||||||||||    
T  28069659 gtgtttttcaatttcttccatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggac 28069758  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||    
T  28069759 ccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttattttgccaaatggagaggatcttcaccc 28069838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 179 - 300
Target Start/End: Complemental strand, 10652694 - 10652573
Alignment:
Q  179 aaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttac 278  Q
    |||||||||||||||||||||||  ||| ||||| ||| |||||| |||| ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  10652694 aaaatataattaatgatggtgggacccaattagtagtatgacccaccatcaattttttgtatctatctctctccaacttgcaaaacaccatttattttac 10652595  T
Q  279 caaatgaagaggatcttcaccc 300  Q
    |||||| |||||||||||||||    
T  10652594 caaatggagaggatcttcaccc 10652573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 178 - 301
Target Start/End: Complemental strand, 10672590 - 10672469
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||||||||||||   ||||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||||||||||||||||     
T  10672590 taaaatataattaatgatggtgggactcacttagtggtaggatccaccatctattttttgtgtctatc--tctccaacttgcaaaactccatttattttg 10672493  T
Q  278 ccaaatgaagaggatcttcaccca 301  Q
    ||||||| |||| |||||||||||    
T  10672492 ccaaatggagagaatcttcaccca 10672469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 121 - 276
Target Start/End: Original strand, 41511202 - 41511357
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||||| |||||||| |||||| ||||||||| |||| | |||||||        |||||||||||||||||||||||   |||||||||| ||||||    
T  41511202 gtgtttttccatttcttcaatttggagagataaaaacacataaaatcttgaaaaaagtaaaatataattaatgatggtggaaaccacttagtgataggac 41511301  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    |||  ||||||||||| | ||||||||| |||||||||||||||||||||||||||    
T  41511302 ccactatctattttttatatctatctctttccaacttgcaaaactccatttatttt 41511357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 298
Target Start/End: Complemental strand, 28319040 - 28318854
Alignment:
Q  118 tacgtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtag 217  Q
    ||||||||| | |||||||| |||||| ||||| |||||||| | |||| ||        ||||||||||||||||||||| ||  ||||||||||||||    
T  28319040 tacgtgtttctccatttcttcaatttggagagacaaagacacataaaattttaaaaaaagtaaaatataattaatgatggttggacccacttagtggtag 28318941  T
Q  218 gacccatcatct------attttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcac 298  Q
    ||||||  ||||      ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||    
T  28318940 gacccactatctttttttattttttttgtatatctctctcaaacttgcaaaactccatttattttaccaaataaagaagatcttcac 28318854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 40695325 - 40695204
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    |||||||||| ||||||||||||    ||||||||||||||||| | ||||||||||||||||||||||||||||||||| | ||||||||||||||||     
T  40695325 taaaatataactaatgatggtggaactcacttagtggtaggacctaccatctattttttgtgtctatctctctccaactt-ccaaactccatttattttg 40695227  T
Q  278 ccaaatgaagaggatcttcaccc 300  Q
    | ||||| ||| |||||||||||    
T  40695226 ctaaatggagaagatcttcaccc 40695204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 6014191 - 6014309
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||| ||||||||||||  | || |||||||| |||||||||| |||||||||| |||||||||||||| ||||||| ||||||||||| |||||||||    
T  6014191 taaaacataattaatgataataggatccacttaatggtaggacctatcatctattcttttgtgtctatctttctccaaattgcaaaactctatttatttt 6014290  T
Q  277 accaaatgaagaggatctt 295  Q
    | |||||| ||||||||||    
T  6014291 agcaaatggagaggatctt 6014309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 45113267 - 45113390
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||| ||||||||||||| ||||   ||||||||||| ||||||| |||||||| |||||||||||| ||||||||| ||||||||| | |||||||||    
T  45113267 taaaaaataattaatgatgatgggacacacttagtggttggacccaccatctattcttttgtgtctatgtctctccaaattgcaaaacacaatttatttt 45113366  T
Q  277 accaaatgaagaggatcttcaccc 300  Q
    | |||||| |||||||||| ||||    
T  45113367 agcaaatggagaggatcttaaccc 45113390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 121 - 264
Target Start/End: Original strand, 24101956 - 24102099
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    ||||||||  |||| ||||||||| |||||||||||||||| |||||||        | |||||||||||||||||||||    |||||||||||||||     
T  24101956 gtgtttttctatttttttaatttggagagataaagacacgtaaaatcttgaaaaaaatgaaatataattaatgatggtggaactcacttagtggtaggat 24102055  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaac 264  Q
    ||| |||||||||||| |||||||||||||  ||||||||||||    
T  24102056 ccaccatctattttttatgtctatctctcttaaacttgcaaaac 24102099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 26749626 - 26749543
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  |||||||||| ||||||||||||  |||||||||||||||||||||||||| ||||||    
T  26749626 taaaaaataattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctctctccaaattgcaa 26749543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 5033310 - 5033371
Alignment:
Q  239 gtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||    
T  5033310 gtctatctctctccaacttgcaaaactccatttattttgccaaatggaaaggatcttcaccc 5033371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 37966520 - 37966400
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    |||||||||||||||| |  |||| || | |||||||||||||| |  ||||||||||||||| ||||||||| ||| |||| ||| ||||||||||||     
T  37966520 taaaatataattaatggtattgggttcaa-ttagtggtaggacctacaatctattttttgtgtttatctctcttcaaattgc-aaattccatttattttg 37966423  T
Q  278 ccaaatgaagaggatcttcaccc 300  Q
    ||||||| |||||||||| ||||    
T  37966422 ccaaatggagaggatcttaaccc 37966400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 17867727 - 17867654
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  || |||||||||||||||||||||||| ||||||    
T  17867727 taatgatggtgggatccacttagtgataggacccaccacttatttttttgtgtctatctctctccaaattgcaa 17867654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 34612562 - 34612634
Alignment:
Q  179 aaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctc 251  Q
    |||| |||||||||||||||| |  |||||||||| ||||||||| ||  |||||||||||||||||||||||    
T  34612562 aaaaaataattaatgatggtgagacccacttagtgataggacccaccacttattttttgtgtctatctctctc 34612634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 42761710 - 42761825
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||| ||||||||||||| |||   ||||| |||||||||| |||  ||||||||| ||||||||||||||| ||| ||||  |  |||||||||||||    
T  42761710 taaaaaataattaatgatgatggaacccactgagtggtaggatccactatctattttatgtgtctatctctcttcaaattgcgtacttccatttatttta 42761809  T
Q  278 ccaaatgaagaggatc 293  Q
      || |||||||||||    
T  42761810 ttaagtgaagaggatc 42761825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 5033108 - 5033150
Alignment:
Q  205 cacttagtggtaggacccatcatctattttttgtgtctatctc 247  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  5033108 cacttagtggtaggacccaccatctattttttgtgtctatctc 5033150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 12177625 - 12177572
Alignment:
Q  212 tggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaact 265  Q
    |||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  12177625 tggtgggatccaccatctattttttgtatctatctctctccaacttgcaaaact 12177572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 12422053 - 12422000
Alignment:
Q  212 tggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaact 265  Q
    |||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||    
T  12422053 tggtgggatccaccatctattttttgtatctatctctctccaacttgcaaaact 12422000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 1937233 - 1937149
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatca-tctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  || ||||||| ||||||||| || |   |||||||||||||||||||||||| ||||||    
T  1937233 taaaaaataattaatgatggtgggacccgcttagtgataggacccaccacttgtttttttgtgtctatctctctccaaattgcaa 1937149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 6399921 - 6399991
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctct 248  Q
    ||||| ||||||||||||  |||| ||||||| ||  || |||||| ||||||||||||||||||||||||    
T  6399921 taaaaaataattaatgataatgggatccacttggtaataagacccaccatctattttttgtgtctatctct 6399991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 36748563 - 36748494
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaa 254  Q
    |||||||||||||||||| |||||||| |||||||||||    |||| ||||||||||||||| |||||||    
T  36748563 ataattaatgatggtgggatccacttaatggtaggacccgctgtcta-tttttgtgtctatctatctccaa 36748494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 21360280 - 21360349
Alignment:
Q  185 taattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaa 254  Q
    |||||||| ||||||||||||||||| ||||| || | || |||||| || ||||| |||||||||||||    
T  21360280 taattaataatggtggggtccacttaatggtatgatctattatctatattatgtgtttatctctctccaa 21360349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 30904969 - 30905042
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||  ||||||||| ||  || |||||| | ||||||||||||||| ||||||    
T  30904969 taatgatggtgggatccacttagtaataggacccaccacttatttttttttatctatctctctccaaattgcaa 30905042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 118 - 300
Target Start/End: Original strand, 37266668 - 37266850
Alignment:
Q  118 tacgtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtag 217  Q
    ||||||||||| |||||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  |||||||||||||     
T  37266668 tacgtgtttttccatttcttcaatttggagagataaagacacataaaatcttgaaaaaactaaaatataattaatgatggtgggacccacttagtggtat 37266767  T
Q  218 gacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  37266768 gacccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 37266850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 132 - 300
Target Start/End: Complemental strand, 35660733 - 35660565
Alignment:
Q  132 tttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatctat 231  Q
    |||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  35660733 tttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacccaccatctat 35660634  T
Q  232 tttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  35660633 tttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 35660565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 121 - 301
Target Start/End: Complemental strand, 18625556 - 18625376
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    ||||||||  |||||||| ||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  |||||||||||||||||    
T  18625556 gtgtttttcaatttctttcatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggac 18625457  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccca 301  Q
    ||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  18625456 ccaccatctattttttgtgtctttctctctccaacttgcaaatctccatttattttgccaaatggagaggatcttcaccca 18625376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 14349744 - 14349922
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | ||||||||||||||| | |||||||||||| | |||||||        ||||||||||||||||||||||||  |||||||||||||||||    
T  14349744 gtgtttctccatttctttaatttggaaagataaagacacat-aaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggac 14349842  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  14349843 ccaccatctattttttgtgtctgtctctctccaacttacaaaactccatttattttaccaaatagagaggatcttcaccc 14349922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 130 - 292
Target Start/End: Complemental strand, 4895861 - 4895699
Alignment:
Q  130 catttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatct 229  Q
    |||||||| |||||| |||||||||||||| | |||| ||        ||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  4895861 catttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacccaccatct 4895762  T
Q  230 attttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggat 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  4895761 attttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaataaagaggat 4895699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 11775790 - 11775909
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||||| ||||||  |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11775790 taaaatataattaatgacggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 11775889  T
Q  278 ccaaatgaagaggatcttca 297  Q
    ||||||| ||||||||||||    
T  11775890 ccaaatggagaggatcttca 11775909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 13032059 - 13032237
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  ||| |||||||||||||    
T  13032059 gtgtttctccatttcttcaatttggagagataaagacacataaaatctt-aaaaaaataaaatataattaatgatggtgggacccatttagtggtaggac 13032157  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
     || ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  13032158 tcaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 13032237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 130 - 300
Target Start/End: Complemental strand, 32129743 - 32129573
Alignment:
Q  130 catttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatct 229  Q
    |||||||| |||||| |||||||||||||| | |||| ||        ||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  32129743 catttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacccaccatct 32129644  T
Q  230 attttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||| ||||||| |||||||||||||||    
T  32129643 atttttggtgtctatctctctccaacttataaaactccatttattttgccaaatggagaggatcttcaccc 32129573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 121 - 301
Target Start/End: Original strand, 39902355 - 39902535
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||| | |||||||        |||||||||||||||||||||||  |||| |||||||||||||    
T  39902355 gtgtttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaagtaaaatataattaatgatggtggaatccatttagtggtaggac 39902454  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccca 301  Q
    ||| ||||||||| |||||| ||||||||||||||||| |||||||||||||||||  |||||| |||||| |||||||||    
T  39902455 ccaccatctatttcttgtgtttatctctctccaacttgtaaaactccatttattttgtcaaatggagaggaacttcaccca 39902535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 130 - 300
Target Start/End: Complemental strand, 40753288 - 40753118
Alignment:
Q  130 catttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatct 229  Q
    ||||||||||||||| |||||||||  ||| | |||||||        ||||||||||||||||||||||||  |||||||||||||||||||| ||| |    
T  40753288 catttctttaatttggagagataaaagcacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacccaccatat 40753189  T
Q  230 attttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||  |||||||||||||||    
T  40753188 attttttgtgtctatctttctccaacttgcaaaactttatttattttgccaaatagagaggatcttcaccc 40753118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 178 - 302
Target Start/End: Original strand, 34827189 - 34827313
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    |||||||||||||| |||||||||  |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||     
T  34827189 taaaatataattaaagatggtgggacccacttagtggtaggatccaccatctattttttttgtctatctctctccaacttgcataactccatttattttg 34827288  T
Q  278 ccaaatgaagaggatcttcacccat 302  Q
    | ||||| ||| |||||||||||||    
T  34827289 ctaaatggagatgatcttcacccat 34827313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 298
Target Start/End: Original strand, 43309113 - 43309225
Alignment:
Q  186 aattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatga 285  Q
    |||||||||||||||   ||| ||| ||||| || |||  ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |    
T  43309113 aattaatgatggtggaacccatttaatggtaagatccactatctattttttatgtctatctctctccaacttgcaaaactccatttattttatcaaataa 43309212  T
Q  286 agaggatcttcac 298  Q
    |||||||||||||    
T  43309213 agaggatcttcac 43309225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 8441049 - 8440943
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||||||||||||   |||||||||||| | | || ||||||||||| ||||||||||  ||||||||||||||||||||||||||||     
T  8441049 taaaatataattaatgatggtgggacacacttagtggtatgtcgcaccatctatttttggtgtctatctacctccaacttgcaaaactccatttattttg 8440950  T
Q  278 ccaaatg 284  Q
    |||||||    
T  8440949 ccaaatg 8440943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 29340999 - 29341113
Alignment:
Q  185 taattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 284  Q
    |||||||||||||||||  ||||||| | ||||||||||  ||||||||| ||||||||||||||||||| |||| | |||||||||||| |||||||||    
T  29340999 taattaatgatggtgggacccacttaatagtaggacccactatctattttctgtgtctatctctctccaaattgc-atactccatttattataccaaatg 29341097  T
Q  285 aagaggatcttcaccc 300  Q
     |||||||||| ||||    
T  29341098 gagaggatctttaccc 29341113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 36290599 - 36290682
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||| ||  |||||||||||||||||||||||||| ||||||    
T  36290599 taaaaaataattaatgatggtgggatccacttagtgataggacccaccacttattttttgtgtctatctctctccaaattgcaa 36290682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 3057419 - 3057534
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaat 283  Q
    ||||||||||||| |||    ||||| ||||||||| ||||||||| |||||| ||||||||||||||| | ||| ||||||| ||||||||||| ||||    
T  3057419 ataattaatgatgatggaactcactttgtggtaggatccatcatcttttttttttgtctatctctctccgaattg-aaaactctatttattttacaaaat 3057517  T
Q  284 gaagaggatcttcaccc 300  Q
    | |||||||||| ||||    
T  3057518 ggagaggatcttaaccc 3057534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 4592797 - 4592858
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtg 239  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||    
T  4592797 taaaatataattaatgatggtgggacccacttagtggtaagacccaccatctattttttgtg 4592858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 124 - 276
Target Start/End: Original strand, 32793317 - 32793468
Alignment:
Q  124 ttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggaccca 223  Q
    |||||| |||||||| ||||||||||||||||||   | |||||||        |||||||||||| ||||| |||||  | ||||||| ||| ||  ||    
T  32793317 tttttttatttctttcatttgaagagataaagacgaataaaatcttgaaaaaagtaaaatataattgatgattgtgggacctacttagtagtaagaatca 32793416  T
Q  224 tcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||||||||||||||| |||||||||| || |||  ||||||||||||||||    
T  32793417 tcatctattttttgtgtatatctctctctaaattg-taaactccatttatttt 32793468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 277
Target Start/End: Complemental strand, 3057280 - 3057134
Alignment:
Q  130 catttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatct 229  Q
    ||||||||  |||||||||||||||||||| | || | |||       ||||||||||||||||||  || |   |||||| |||||||| ||| |||||    
T  3057280 catttcttctatttgaagagataaagacacttaaattttttaaaaaagtaaaatataattaatgattatgtgactcacttaatggtaggatccaccatct 3057181  T
Q  230 attttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||| ||||||| ||||| |||| ||| |||||||||||||    
T  3057180 attttttgtgtttatctctatccaaattgc-aaattccatttatttta 3057134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 43222129 - 43222193
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctct 248  Q
    |||||||||||||||||| |||| ||| || || |||||| ||||||||||||||||||||||||    
T  43222129 ataattaatgatggtgggatccatttaatgataagacccaccatctattttttgtgtctatctct 43222193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 41660103 - 41660186
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  |||| ||||| |  |||||| ||  |||||||||||||||||||||||||| ||||||    
T  41660103 taaaaaataattaatgatggtgggacccacctagtgatgagacccaccacttattttttgtgtctatctctctccaaattgcaa 41660186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 2984468 - 2984392
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaa 254  Q
    ||||| ||||||||||||||||||  ||| |||||| |||||  |||||  |||||| |||||||||||||||||||    
T  2984468 taaaaaataattaatgatggtgggacccatttagtgataggattcatcacttattttatgtgtctatctctctccaa 2984392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 1475773 - 1475693
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggg 201  Q
    ||||||||||||||||| |||||| || ||||||||||| | |||||||        ||||||||||||||||||||||||    
T  1475773 gtgttttttcatttcttcaatttggagtgataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtggg 1475693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 18653385 - 18653455
Alignment:
Q  205 cacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    |||||| |||||| || ||  ||||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  18653385 cacttaatggtagaactcactatctattttttgtgtctatctctcttcaaattgc-aaactccatttatttt 18653455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 9460655 - 9460599
Alignment:
Q  236 tgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatc 293  Q
    ||||||||||||||||||| ||||| | ||| ||||||||||||||||| ||||||||    
T  9460655 tgtgtctatctctctccaaattgcata-ctctatttattttaccaaatggagaggatc 9460599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 3041386 - 3041302
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatca-tctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  || ||||||| ||||||||| || |   |||||||| ||||||||||||||| ||||||    
T  3041386 taaaaaataattaatgatggtgggacccgcttagtgataggacccaccacttgtttttttgtatctatctctctccaaattgcaa 3041302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 27428949 - 27428877
Alignment:
Q  188 ttaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgca 260  Q
    |||||||||||||    |||||| ||||||||  || |||||||||||||||||||||||| ||||| |||||    
T  27428949 ttaatgatggtggaactcacttaatggtaggattcaccatctattttttgtgtctatctctttccaaattgca 27428877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 31653080 - 31653155
Alignment:
Q  226 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacccat 302  Q
    ||||||||| ||||| ||||||||||||| |||| | || ||||||||| ||||||||| | |||||||| ||||||    
T  31653080 atctattttatgtgtttatctctctccaaattgc-atacgccatttattataccaaatggataggatctttacccat 31653155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 40162737 - 40162803
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaa 254  Q
    ||||||||||||| ||||||||||| ||||||||| ||  || |||||| ||||||||||| |||||    
T  40162737 taatgatggtgggatccacttagtgataggacccaccacttatttttttttgtctatctctttccaa 40162803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 1475683 - 1475638
Alignment:
Q  228 ctattttttgtgtctatctctctccaacttgcaaaactccatttat 273  Q
    ||||||||||| ||||| |||||| |||||||||||| ||||||||    
T  1475683 ctattttttgtatctatttctctcaaacttgcaaaacaccatttat 1475638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 8e-56; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 131 - 302
Target Start/End: Complemental strand, 19902043 - 19901872
Alignment:
Q  131 atttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatcta 230  Q
    ||||||| |||||| |||||||||||||| | |||| ||        ||||||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  19902043 atttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacccaccatcta 19901944  T
Q  231 ttttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacccat 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19901943 ttttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatggagaggatcttcacccat 19901872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 3952305 - 3952124
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||| | |||||||        |||||||||||||||||||||| |  |||||||||||||||||    
T  3952305 gtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgagacccacttagtggtaggac 3952206  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacccat 302  Q
    ||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||    
T  3952205 ccaccatctattttttttgtctatctctctccaacttgccaaactccatttattttgccaaatggagaggatcttcacccat 3952124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 131 - 300
Target Start/End: Original strand, 56558229 - 56558398
Alignment:
Q  131 atttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatcta 230  Q
    ||||||| |||||| |||||||||||||| | |||| ||        ||||||||||||||||||||||||  |||||||||| ||||||||| ||||||    
T  56558229 atttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtgataggacccaccatcta 56558328  T
Q  231 ttttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  56558329 ttttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 56558398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 130 - 300
Target Start/End: Original strand, 23610591 - 23610761
Alignment:
Q  130 catttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatct 229  Q
    |||||||| |||||| ||||||||||| || | |||||||        ||||||||| ||||||||||||||  ||||||||||||| |||||| |||||    
T  23610591 catttcttcaatttggagagataaagatacataaaatcttgaaaaaagtaaaatatatttaatgatggtgggacccacttagtggtatgacccaccatct 23610690  T
Q  230 attttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  23610691 attttttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggagaggatcttcaccc 23610761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 121 - 299
Target Start/End: Original strand, 34778361 - 34778539
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| ||| || |||||||||||||| | |||||||        ||||||||||||||||||||||||  ||||||||||||||||     
T  34778361 gtgtttctccatttcttcaatgtggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggat 34778460  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacc 299  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  34778461 ccaccatctattttttgtgtctatctctcttcaacttgcaaaactccatttattttgccaaatggagaggatcttcacc 34778539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 178 - 303
Target Start/End: Complemental strand, 5416543 - 5416419
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  5416543 taaaatataattaatgatggtgggacccacttagtggtaggacccacaatctattttt-gtgtctatctctctccaacttgcaaaactccatttattttg 5416445  T
Q  278 ccaaatgaagaggatcttcacccatg 303  Q
     |||||| ||||||||||||||||||    
T  5416444 tcaaatggagaggatcttcacccatg 5416419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 130 - 300
Target Start/End: Complemental strand, 5763288 - 5763118
Alignment:
Q  130 catttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatct 229  Q
    |||||||| |||||| |||||||||||||| | |||| ||        ||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  5763288 catttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacccaccatct 5763189  T
Q  230 attttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||||||||| ||||||||||||||||||| |||||||||| |||||| ||||||  |||||||||||||||    
T  5763188 attttttgtttctatctctctccaacttgtaaaactccatatattttgccaaattgagaggatcttcaccc 5763118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 33247208 - 33247086
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    |||||||||||||||||||||||   ||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  33247208 taaaatataattaatgatggtggaacccatttagtggtagaacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttg 33247109  T
Q  278 ccaaatgaagaggatcttcaccc 300  Q
    ||||||| |||||||||||||||    
T  33247108 ccaaatggagaggatcttcaccc 33247086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 131 - 301
Target Start/End: Complemental strand, 18207165 - 18206995
Alignment:
Q  131 atttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatcta 230  Q
    ||||||| |||||| | |||||||||||| | |||||||        ||||||||||||||||||| ||||  |||||||||||||||||||| ||||||    
T  18207165 atttcttcaatttggaaagataaagacacataaaatcttgaaaaaggtaaaatataattaatgatgatgggacccacttagtggtaggacccaccatcta 18207066  T
Q  231 ttttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccca 301  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||  |||||| ||||||||||||||||    
T  18207065 ttttttttgtctatctctctctaacttgcaaaactacatttattttgtcaaatggagaggatcttcaccca 18206995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 12312554 - 12312431
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgt-gtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||||||||||||||||| ||||  |||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  12312554 taaaatataattaatgatgatgggacccacttagtggtaggatccaccatctatttttttttgtctatctctctccaacttgcaaaactccatttatttt 12312455  T
Q  277 accaaatgaagaggatcttcaccc 300  Q
     ||||||| |||||||||||||||    
T  12312454 gccaaatggagaggatcttcaccc 12312431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 130 - 300
Target Start/End: Complemental strand, 38079846 - 38079676
Alignment:
Q  130 catttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatct 229  Q
    ||||| || |||||| |||||||||||||| | |||||||        |||||||||||||||||||||||  |||||||||| |||||||||| |||||    
T  38079846 cattttttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtggaatccacttagtagtaggacccaccatct 38079747  T
Q  230 attttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||||   ||||| |||||||||||||||    
T  38079746 atttcttgtgtctatctctctcaaactagcaaaactccatttattttgttaaatggagaggatcttcaccc 38079676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 182 - 300
Target Start/End: Original strand, 24073617 - 24073735
Alignment:
Q  182 atataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaa 281  Q
    |||||||||||||||| |||  |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  24073617 atataattaatgatggcgggacccacttagtggtaggacccaccatctatttgttgtgtctatctctctccaacttacaaatctccatttattttgccaa 24073716  T
Q  282 atgaagaggatcttcaccc 300  Q
    |||  ||||||||||||||    
T  24073717 atggggaggatcttcaccc 24073735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 30567898 - 30568004
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||||||| |||   |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  30567898 taaaatataattaatgatgatggaacccacttagtggtaggacccaccatctattttttgtgtctatctctcttcaacttgcaaaactccatttattttg 30567997  T
Q  278 ccaaatg 284  Q
    |||||||    
T  30567998 ccaaatg 30568004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 33262677 - 33262508
Alignment:
Q  131 atttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatcta 230  Q
    ||||||| |||||| |||||||||||||| | |||| ||        ||||||||||||||||||||||||  | | |||||||||||| ||| ||||||    
T  33262677 atttcttcaatttggagagataaagacacataaaattttaaaaaaagtaaaatataattaatgatggtgggacctatttagtggtaggatccaccatcta 33262578  T
Q  231 ttttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||||||||||||||||||||| |||||||||||| | ||||||||| ||||||  |||||||||||||||    
T  33262577 ttttttgtgtctatctctctctaacttgcaaaacacaatttattttgccaaatagagaggatcttcaccc 33262508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 132 - 300
Target Start/End: Original strand, 39862468 - 39862636
Alignment:
Q  132 tttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatctat 231  Q
    |||||| |||||| |||||||||||||| | |||||||        |||||||||||||||||||||||    || |||||| |||||| || |||||||    
T  39862468 tttcttcaatttggagagataaagacacataaaatcttaaaaaaagtaaaatataattaatgatggtggaactcatttagtgataggacacaccatctat 39862567  T
Q  232 tttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||||||||||||||||| ||||||||||| || |||||||||| |||||| |||||||||||||||    
T  39862568 tttttgtgtctatctctctcaaacttgcaaaattctatttattttatcaaatggagaggatcttcaccc 39862636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 12153185 - 12153273
Alignment:
Q  212 tggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  12153185 tggtgggacccaccatctaatttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 12153273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 178 - 295
Target Start/End: Complemental strand, 47922445 - 47922327
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||| |||||||  |||| ||||  |||||||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||||| |||||||||    
T  47922445 taaaaaataattatagatgatgggacccacttagtggtaggacccaccatctattcttttgtgtctatatctctccaaattgcaaaactcaatttatttt 47922346  T
Q  277 accaaatgaagaggatctt 295  Q
    | |||||| ||||||||||    
T  47922345 agcaaatggagaggatctt 47922327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 52018811 - 52018884
Alignment:
Q  229 tattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacccat 302  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||    
T  52018811 tattttttgtatctatctctctccaacttgcaaaactccatttattttgctaaatggagaggatcttcacccat 52018884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 56269153 - 56269071
Alignment:
Q  179 aaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    |||| ||||||||||||||||||  |||||||||||||||||||| ||  |||||||||||||||||||||||||| ||||||    
T  56269153 aaaaaataattaatgatggtgggacccacttagtggtaggacccaccacttattttttgtgtctatctctctccaaattgcaa 56269071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 121 - 300
Target Start/End: Complemental strand, 47922210 - 47922035
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||  |||||||||||||||| |||| ||        ||||||||| |||||||||||||   ||||||||||||| |||    
T  47922210 gtgtttctccatttcttcaatttagagagataaagacacgtaaaatattgaaaaaaataaaatatatttaatgatggtggaacccacttagtggtaagac 47922111  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||  ||||||||||||||| ||||| |    ||||||||||| |||||||||||| |||||| || ||||| |||||||    
T  47922110 ccactatctattttttgtgtttatcttt----aacttgcaaaattccatttattttgccaaataaaaaggatattcaccc 47922035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 33524313 - 33524382
Alignment:
Q  232 tttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccca 301  Q
    ||||||| |||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||    
T  33524313 tttttgtatctatctctctccaacttccaaatctccatttattttgccaaatggagaggatcttcaccca 33524382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 23474115 - 23474229
Alignment:
Q  185 taattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 284  Q
    ||||||||||||||||| | |||| | | |||||||||| |||||||||| |||||||||||||| |||| |||| | |||||||||||| | | |||||    
T  23474115 taattaatgatggtgggattcactcaatagtaggacccaccatctattttatgtgtctatctctccccaaattgc-atactccatttattatgctaaatg 23474213  T
Q  285 aagaggatcttcaccc 300  Q
     |||||||||| ||||    
T  23474214 gagaggatctttaccc 23474229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 56453898 - 56453816
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgca 260  Q
    ||||| ||||| ||||||||||||  ||||||| || ||||||||| || ||||||||||||||||||||||||||| |||||    
T  56453898 taaaaaataatgaatgatggtgggacccacttaatgataggacccaccacctattttttgtgtctatctctctccaaattgca 56453816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 12241543 - 12241441
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  |||||||||||||||||    
T  12241543 gtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggac 12241444  T
Q  221 cca 223  Q
    |||    
T  12241443 cca 12241441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 36688260 - 36688183
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||||||||  |||||||||| |||||| || ||  |||||||||||||||||||||||||| ||||||    
T  36688260 ataattaatgatggtgggacccacttagtgataggactcaacacttattttttgtgtctatctctctccaaattgcaa 36688183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 5524444 - 5524527
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  ||||||| || ||||||||| ||  |||||||| ||||||||||||||||| ||||||    
T  5524444 taaaaaataattaatgatggtgggacccacttactgataggacccaccacttattttttatgtctatctctctccaaattgcaa 5524527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 34927510 - 34927596
Alignment:
Q  206 acttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagagga 291  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||||  || ||||||||| ||||||||||||  ||||| ||||||    
T  34927510 acttaatggtaggacccaccatctattcttttgtgtctatctctctttaaattgcaaaaccccatttattttagtaaatggagagga 34927596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 293
Target Start/End: Original strand, 1871280 - 1871388
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaat 283  Q
    ||||||||||||| ||||  ||||||||| |||||| |||  |||||| |||| ||||||||||||||||| |||| | ||||||||||||||  |||||    
T  1871280 ataattaatgatgatgggacccacttagtagtaggatccactatctatattttttgtctatctctctccaaattgc-atactccatttattttgtcaaat 1871378  T
Q  284 gaagaggatc 293  Q
      ||||||||    
T  1871379 tgagaggatc 1871388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 37002329 - 37002246
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  |||||||||  ||||| ||| ||  |||||||||||||||||||| ||||| ||||||    
T  37002329 taaaaaataattaatgatggtgggacccacttagtaataggatccaccacttattttttgtgtctatctctttccaaattgcaa 37002246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 42010114 - 42010197
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  ||| |||||| ||||||||  ||  |||||||||| ||||||||||||||| ||||||    
T  42010114 taaaaaataattaatgatggtgggacccatttagtgataggacccgccacttattttttgtatctatctctctccaaattgcaa 42010197  T

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Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 26428971 - 26429061
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttat 273  Q
    ||||||||||||| || |  ||| | ||||||||||| || |||||||| |||||||||||||| ||||||| |||||||||| |||||||    
T  26428971 ataattaatgatgatgagacccattcagtggtaggactcaccatctattcttttgtgtctatctttctccaaattgcaaaacttcatttat 26429061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 17493010 - 17493083
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatctatttt-ttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||  ||||||||||| ||||||||| ||  |||||| |||||||||||||||||||| ||||||    
T  17493010 taatgatggtggaatccacttagtgataggacccaccacttatttttttgtgtctatctctctccaaattgcaa 17493083  T

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Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 32146510 - 32146583
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  || |||||||| ||||||||||||||| ||||||    
T  32146510 taatgatggtgggatccacttagtgataggacccaccacttatttttttgtatctatctctctccaaattgcaa 32146583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 46238974 - 46239047
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  || |||||||||||||||||||| ||| ||||||    
T  46238974 taatgatggtgggatccacttagtgataggacccaccacttatttttttgtgtctatctctcttcaaattgcaa 46239047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 53526096 - 53526169
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  || |||||| ||||||||||||||||| ||||||    
T  53526096 taatgatggtgggatccacttagtgataggacccaccacttatttttttttgtctatctctctccaaattgcaa 53526169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 55160438 - 55160365
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  || |||||||||||||||||| ||||| ||||||    
T  55160438 taatgatggtgggatccacttagtgataggacccaccacttatttttttgtgtctatctctttccaaattgcaa 55160365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 25219003 - 25219070
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatca--tctattttttgtgtctatctctctccaa 254  Q
    ||||||||||||| ||||||||||| ||||||||| ||  | | ||||||||||||||||||||||||    
T  25219003 taatgatggtgggatccacttagtgataggacccaccacttattttttttgtgtctatctctctccaa 25219070  T

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Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 1015931 - 1015849
Alignment:
Q  179 aaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    |||| ||||||||||||||||||  |||| || || | ||||||| ||  ||||||||||||||||||||||| || ||||||    
T  1015931 aaaaaataattaatgatggtgggacccacctaatgatgggacccaccacttattttttgtgtctatctctctctaaattgcaa 1015849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 25442252 - 25442190
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgt 240  Q
    ||||| ||||||||||  |||| | |||||||||||||||||||||  |||||||||||||||    
T  25442252 taaaaaataattaatgtcggtgagatccacttagtggtaggacccacaatctattttttgtgt 25442190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 17317215 - 17317287
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||| ||||||  || |||||| ||||||||||||||||| ||||||    
T  17317215 taatgatggtgggatccacttagtgatagga-ccatcacttatttttttttgtctatctctctccaaattgcaa 17317287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 31862298 - 31862246
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatcta 230  Q
    ||||| ||||||||||||||||||  |||||||||||||||| ||| ||||||    
T  31862298 taaaaaataattaatgatggtgggacccacttagtggtaggatccaccatcta 31862246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 33841830 - 33841768
Alignment:
Q  230 attttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatc 293  Q
    ||||||||||||||||||||||||| |||  | |||||||||| |||| |||||| ||||||||    
T  33841830 attttttgtgtctatctctctccaaattg-tatactccatttactttaacaaatggagaggatc 33841768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 48084603 - 48084533
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctct 248  Q
    ||||| ||||||||||||||||||  |||||||||| ||| ||||| ||  ||| |||| |||||||||||    
T  48084603 taaaaaataattaatgatggtgggacccacttagtgctagaacccaccacttatgttttatgtctatctct 48084533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 5361457 - 5361506
Alignment:
Q  212 tggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    |||| ||||||| ||  |||||||||||||||||||||||||| ||||||    
T  5361457 tggtgggacccaccacttattttttgtgtctatctctctccaaattgcaa 5361506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 42844265 - 42844189
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaa 254  Q
    ||||| |||||||||||||| ||| |||| ||| | ||||||| ||   |||||||| ||||||||||| |||||||    
T  42844265 taaaaaataattaatgatggagggatccatttaatagtaggacacactctctattttatgtgtctatctatctccaa 42844189  T

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Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 121 - 302
Target Start/End: Original strand, 27033591 - 27033772
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||| | |||||||        |||||||||||||||||||||||| ||||||||||||||||||    
T  27033591 gtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggatccacttagtggtaggac 27033690  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacccat 302  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  27033691 ccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggagatgatcttcacccat 27033772  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 131 - 302
Target Start/End: Original strand, 2229933 - 2230104
Alignment:
Q  131 atttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatcta 230  Q
    |||||||||||||| |||||||||||||| | |||| ||        |||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  2229933 atttctttaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtggaaaccacttagtggtaggacccatcatcta 2230032  T
Q  231 ttttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacccat 302  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |||||||||    
T  2230033 ttttttgtgtctatctctctccaacttgcaaaactccaattattttgccaaatggagaggatgttcacccat 2230104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 121 - 301
Target Start/End: Complemental strand, 19830567 - 19830386
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnn-taaaatataattaatgatggtggggtccacttagtggtagga 219  Q
    |||||||| |||||||| |||||| |||||||||||||| | ||||||||        ||||||||||||||||||||||||  ||||||| ||||||||    
T  19830567 gtgtttttccatttcttcaatttggagagataaagacacataaaatctttaaaaaaggtaaaatataattaatgatggtgggacccacttaatggtagga 19830468  T
Q  220 cccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccca 301  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  19830467 cccaccatctattttttgtgtctatttctccccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccca 19830386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 121 - 301
Target Start/End: Complemental strand, 43720082 - 43719902
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  |||||||||||||||||    
T  43720082 gtgtttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggac 43719983  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccca 301  Q
    |||  || ||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||    
T  43719982 ccacaatttattttttgtgtctatctctctccaacttgcaaaactccatttattttgttaaatggagaggatcttcaccca 43719902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 121 - 301
Target Start/End: Original strand, 34373771 - 34373951
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| ||||||| || |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  | | |||||||||||||    
T  34373771 gtgtttcttcattttttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacctaattagtggtaggac 34373870  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccca 301  Q
    ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||| |||||||||||    
T  34373871 ccaccatctattttttgtgtctatctctctccaacttgcaaaacacaatttattttgccaaatggagagaatcttcaccca 34373951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 46167390 - 46167509
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||     
T  46167390 taaaatataattaataatggtaggatccacttagtggtaggacccaccatatattttttgtgtctatctctctccaacttacaaaactccatttattttg 46167489  T
Q  278 ccaaatgaagaggatcttca 297  Q
    | ||||| ||||||| ||||    
T  46167490 ctaaatggagaggatgttca 46167509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 130 - 298
Target Start/End: Original strand, 40851722 - 40851891
Alignment:
Q  130 catttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataatt-aatgatggtggggtccacttagtggtaggacccatcatc 228  Q
    |||||||| |||||| |||||||||||||| | |||||||        |||||||| ||| ||||||||| ||  |||||||||||| | ||||| ||||    
T  40851722 catttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatatgatttaatgatggtaggacccacttagtggttgaacccaccatc 40851821  T
Q  229 tattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcac 298  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||  |||||  |||||||||||||    
T  40851822 tattttttgtgtctatctttctccaacttgcaaaactccatttattttgtcaaattgagaggatcttcac 40851891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 24754680 - 24754776
Alignment:
Q  204 ccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||||||||||||||  | |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  24754680 ccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatcttcaccc 24754776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 24763677 - 24763773
Alignment:
Q  204 ccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||||||||||||||  | |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  24763677 ccacttagtggtaggacataccatctattttgtgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatcttcaccc 24763773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 178 - 282
Target Start/End: Complemental strand, 34373663 - 34373559
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||| |||||||||||| |  |||||||||||||| |||||||||     
T  34373663 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatctatttttagtgtctatctctatggaacttgcaaaactctatttattttg 34373564  T
Q  278 ccaaa 282  Q
    |||||    
T  34373563 ccaaa 34373559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 48084816 - 48084939
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||| ||||||||||||| ||||  |||||||||||| ||||||| |||||||| ||||||||||||||||| |||| ||||||||||| |||||||||    
T  48084816 taaaaaataattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctccccaaattgcaaaactcaatttatttt 48084915  T
Q  277 accaaatgaagaggatcttcaccc 300  Q
    | |||||| |||||||||| ||||    
T  48084916 agcaaatggagaggatcttaaccc 48084939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 276
Target Start/End: Original strand, 12402883 - 12403061
Alignment:
Q  103 gggttaggatctctc----tacgtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnn-taaaatataattaatgatgg 197  Q
    |||||||||||||||    || |||||| |||||||  |||||||| |||||||||||||| | |||||||         ||||||||||||||| ||||    
T  12402883 gggttaggatctctccatttatgtgtttcttcattttcttaatttggagagataaagacacataaaatcttaaaaaaaagtaaaatataattaataatgg 12402982  T
Q  198 tggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||   ||||||||||||| | ||| |||||| ||||| | ||||||||||||||||||||||||||| |||||||||    
T  12402983 tgggactcacttagtggtagaatccaccatctaatttttatatctatctctctccaacttgcaaaactctatttatttt 12403061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 31523746 - 31523663
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  |||||||||  ||||||||| ||  |||||||||||||||||||||||||| ||||||    
T  31523746 taaaaaataattaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctctctccaaattgcaa 31523663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 550894 - 550790
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    |||||||||| |||| ||||||||  ||||||| || ||||| ||| |||||||||||||| | ||||| ||||||| |||| ||||||||||||||||     
T  550894 taaaatataaataataatggtgggacccacttaatgataggatccaccatctattttttgtatatatctttctccaaattgc-aaactccatttattttg 550796  T
Q  278 ccaaat 283  Q
    ||||||    
T  550795 ccaaat 550790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 42613077 - 42613160
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  |||||||||| ||||||||| ||  |||||||| ||||||||||||| ||| ||||||    
T  42613077 taaaaaataattaatgatggtgggacccacttagtgataggacccaccacttattttttttgtctatctctcttcaaattgcaa 42613160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 49679348 - 49679265
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  ||| |||||| ||||||||  ||  |||||||||||||||||||||||||| ||||||    
T  49679348 taaaaaataattaatgatggtgggacccatttagtgataggacccgccacttattttttgtgtctatctctctccaaattgcaa 49679265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 24647905 - 24647959
Alignment:
Q  248 tctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacccat 302  Q
    |||||||||||||||||||||||||||||  |||||| |||||||||||||||||    
T  24647905 tctccaacttgcaaaactccatttattttgtcaaatggagaggatcttcacccat 24647959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 303
Target Start/End: Original strand, 1995441 - 1995566
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||| |||||||||||||||| |   |||||| ||||||||| ||| ||||||||| | ||||||||||||| ||| |||   |  ||||||||||| |    
T  1995441 taaaaaataattaatgatggtgagactcacttattggtaggactcattatctattttctatgtctatctctcttcaaattgtgtacttccatttatttga 1995540  T
Q  278 ccaaatgaagaggatcttcacccatg 303  Q
      |||||||||||||| | |||||||    
T  1995541 taaaatgaagaggatcctaacccatg 1995566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 566852 - 566746
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctatttttt-gtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    |||||||||| |||| | ||||||  ||||||| || ||||| ||  ||| |||||||| || ||||||||||||||| |||| ||||||||||||||||    
T  566852 taaaatataaataataaaggtgggacccacttaatgataggatccgccatatatttttttgtatctatctctctccaaattgc-aaactccatttatttt 566754  T
Q  277 accaaatg 284  Q
     |||||||    
T  566753 gccaaatg 566746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 29586340 - 29586454
Alignment:
Q  185 taattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 284  Q
    ||||||||||||||| |  ||||||| | ||| |||  |  ||||||||| |||||||||||||||||||  ||| | |||||||||||| | | |||||    
T  29586340 taattaatgatggtgagacccacttaatagtaagacttactatctattttatgtgtctatctctctccaaactgc-atactccatttattatgctaaatg 29586438  T
Q  285 aagaggatcttcaccc 300  Q
    ||||||||||| ||||    
T  29586439 aagaggatctttaccc 29586454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 30235484 - 30235418
Alignment:
Q  226 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatc 293  Q
    ||||||||||| ||||||||||||| ||| ||||| | |||||||||||||| |||||||||| ||||    
T  30235484 atctattttttatgtctatctctcttcaaattgcata-ctccatttattttaacaaatgaagatgatc 30235418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 33632827 - 33632940
Alignment:
Q  185 taattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 284  Q
    |||||||||||| |||  |||| ||| | |||||| |||  ||||||||| ||||||||||||||||||| |||| |  ||||||||||| |||||||||    
T  33632827 taattaatgatg-tggaatccatttaatagtaggatccactatctattttatgtgtctatctctctccaaattgc-atgctccatttattataccaaatg 33632924  T
Q  285 aagaggatcttcaccc 300  Q
     ||| |||||| ||||    
T  33632925 gagaagatctttaccc 33632940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 40810434 - 40810357
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaa 254  Q
    ||||| ||||||||||||| ||||  ||||||||||||  |||||| |||||||| |||| ||| |||||||||||||    
T  40810434 taaaaaataattaatgatgatgggacccacttagtggttagacccaccatctattcttttttgtttatctctctccaa 40810357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 3009253 - 3009339
Alignment:
Q  212 tggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||| ||||||||||  |||||||| ||||||||||||||||| |||| ||  ||||||||||||   ||||| |||||||||| ||||    
T  3009253 tggtgggacccatcacttatttttt-tgtctatctctctccaaattgc-aacttccatttatttttataaatggagaggatctttaccc 3009339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 294
Target Start/End: Complemental strand, 28229472 - 28229365
Alignment:
Q  186 aattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatga 285  Q
    |||||||||||||| |   || ||| || |||||| || || ||||||||||||||||| ||| ||| | ||||| | ||||||||||||||  |||||     
T  28229472 aattaatgatggtgagactcatttaatgataggactcaccacctattttttgtgtctatatctttcctaattgcaca-ctccatttattttaataaatgg 28229374  T
Q  286 agaggatct 294  Q
    |||||||||    
T  28229373 agaggatct 28229365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 8e-53; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 118 - 300
Target Start/End: Original strand, 35316762 - 35316944
Alignment:
Q  118 tacgtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtag 217  Q
    ||||||||| | |||||||| |||||| |||||||||||||  | |||||||        ||||||||||||||||||||||||  ||||||||||||||    
T  35316762 tacgtgtttctccatttcttcaatttggagagataaagacatataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtag 35316861  T
Q  218 gacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  35316862 gatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 35316944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 131 - 297
Target Start/End: Original strand, 13238631 - 13238797
Alignment:
Q  131 atttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatcta 230  Q
    ||||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  |||||| ||||||||||||| ||||||    
T  13238631 atttcttcaatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttggtggtaggacccaccatcta 13238730  T
Q  231 ttttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttca 297  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  13238731 ttttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatggagaggatcttca 13238797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 28564831 - 28565011
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnn-taaaatataattaatgatggtggggtccacttagtggtagga 219  Q
    |||||| | |||||||| |||||| |||||||||||||| | ||||||||        ||||||||||||||||||||||||  ||||||||||||||||    
T  28564831 gtgtttctccatttcttcaatttggagagataaagacacataaaatcttttaaaaaagtaaaatataattaatgatggtgggacccacttagtggtagga 28564930  T
Q  220 cccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||| |||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||| |||||||||||||||    
T  28564931 cccaccatctattttttgtgtctatctctctacaacttaaaaaactccatttattttgccaaatggagaggatcttcaccc 28565011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 23259565 - 23259443
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    |||||||||||||||||||||||| |||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||     
T  23259565 taaaatataattaatgatggtgggatccacttagtagtaggacccaccagctattttttgtgtctatctctctccaacttgcaaaacaccatttattttg 23259466  T
Q  278 ccaaatgaagaggatcttcaccc 300  Q
    ||||||| |||||||||||||||    
T  23259465 ccaaatggagaggatcttcaccc 23259443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 181 - 301
Target Start/End: Original strand, 2063353 - 2063473
Alignment:
Q  181 aatataattaatgatggtggggtccacttagtggtaggacccatc-atctattttttgtgtctatctctctccaacttgcaaaactccatttattttacc 279  Q
    ||||| ||||||||||||||   |||||| ||||||||||| | | ||||||||||||||||||||||||||||| |||| |||||| |||||||||  |    
T  2063353 aatattattaatgatggtggaacccacttggtggtaggaccaaaccatctattttttgtgtctatctctctccaaattgc-aaactctatttattttgtc 2063451  T
Q  280 aaatgaagaggatcttcaccca 301  Q
    |||||||||||||||| |||||    
T  2063452 aaatgaagaggatcttaaccca 2063473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 45625123 - 45625035
Alignment:
Q  212 tggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||| |||||||  || ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  45625123 tggtgggacccacaatttatttcttgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatcttcaccc 45625035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 11864913 - 11864988
Alignment:
Q  225 catctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||| |||||||||||||||    
T  11864913 catctattttttgtgtctatctctctccaacttgtaaaactccatttattttgataaatggagaggatcttcaccc 11864988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 30709115 - 30709183
Alignment:
Q  186 aattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaa 254  Q
    |||||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  30709115 aattaatgatggtgggatccacttagtggtaggacccaatatctattttatgtgtctatctctctccaa 30709183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 8988852 - 8988935
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  |||||||||| ||||||| ||||  |||||||||||||||||||||||||| ||||||    
T  8988852 taaaaaataattaatgatggtgggacccacttagtgataggacctatcacttattttttgtgtctatctctctccaaattgcaa 8988935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 374990 - 375073
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  |||||||||  ||||||||| ||  |||||||||||||||||||||||||| ||||||    
T  374990 taaaaaataattaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctctctccaaattgcaa 375073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 19908777 - 19908897
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||| ||||||||||||||||||  |||||||   ||||||| ||  ||||||||| |||||||||||| |||||| |||| | |||||||||||| ||    
T  19908777 taaaaaataattaatgatggtgggacccacttaaaagtaggactcactatctattttatgtgtctatctc-ctccaaattgc-atactccatttattata 19908874  T
Q  278 ccaaatgaagaggatcttcaccc 300  Q
     ||||||||||||||||| ||||    
T  19908875 tcaaatgaagaggatctttaccc 19908897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 40640706 - 40640783
Alignment:
Q  218 gacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatct 294  Q
    |||||| |||||||| |||||| | ||||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  40640706 gacccaccatctattcttttgtatatatctctctccaaattgcaaaactccatttattttaacaaatggagaggatct 40640783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 23459924 - 23459841
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  ||| |||||| ||||||||  ||  |||||||||||||||||||||||||| ||||||    
T  23459924 taaaaaataattaatgatggtgggacccatttagtgataggacccgccacttattttttgtgtctatctctctccaaattgcaa 23459841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 13780506 - 13780579
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  || |||||||||||||||||||||||| ||||||    
T  13780506 taatgatggtgggatccacttagtgataggacccaccacttatttttttgtgtctatctctctccaaattgcaa 13780579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 277
Target Start/End: Complemental strand, 21454572 - 21454475
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||| |||||||||||||||||   ||||||| ||||| ||||||  ||||| |||||||||||||||||||| || || | |||||||||||||||||    
T  21454572 taaaaaataattaatgatggtggaacccacttaatggtatgacccacaatcta-tttttgtgtctatctctctctaaattac-aaactccatttatttta 21454475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 4446974 - 4446860
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||| |||||||||||| |||    ||| |||||||||||| |||  ||||||||| ||||||||||||||| ||| ||| | |  |||||||||||||    
T  4446974 taaaaaataattaatgatagtgaaacccaattagtggtaggatccactatctattttatgtgtctatctctcttcaaattgtacacttccatttatttta 4446875  T
Q  278 ccaaatgaagaggat 292  Q
     |||||| |||||||    
T  4446874 tcaaatggagaggat 4446860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 30857750 - 30857642
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaat 283  Q
    |||||||||||||||| | |||| ||| | |||||| |||| |||||||||||||||||| |||||| ||| || | | ||||||||||||||   ||||    
T  30857750 ataattaatgatggtgtgatccatttaatagtaggatccattatctattttttgtgtctacctctcttcaaattac-atactccatttattttgtgaaat 30857652  T
Q  284 gaagaggatc 293  Q
    | ||||||||    
T  30857651 ggagaggatc 30857642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 40254217 - 40254144
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  |||| ||||||||||||||||| |||| ||||||    
T  40254217 taatgatggtgggatccacttagtgataggacccaccacttattattttgtgtctatctctccccaaattgcaa 40254144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 289
Target Start/End: Original strand, 36929720 - 36929823
Alignment:
Q  185 taattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 284  Q
    ||||||||||||| ||  |||| ||| ||||||||| ||  | ||||||| ||||||||||||||||||| |||| | |||||||||||||| | |||||    
T  36929720 taattaatgatggcggaatccatttaatggtaggacacactacctattttatgtgtctatctctctccaaattgc-atactccatttattttgctaaatg 36929818  T
Q  285 aagag 289  Q
     ||||    
T  36929819 gagag 36929823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 300
Target Start/End: Original strand, 38824061 - 38824145
Alignment:
Q  217 ggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||||||| ||| |||| |||| ||||||||||||||||| || ||||||||||||||||||| |||||  ||| |||||| ||||    
T  38824061 ggacccaccatttattcttttttgtctatctctctccaaattacaaaactccatttattttagcaaatagagatgatcttaaccc 38824145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 3594865 - 3594938
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||| ||| ||  || |||||| ||||||||||||||||| ||||||    
T  3594865 taatgatggtgggatccacttagtgataggatccaccacttatttttttttgtctatctctctccaaattgcaa 3594938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 6288050 - 6288125
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta---ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| |||||||||| |  ||   |||||| ||||||||||||||||| ||||||    
T  6288050 taatgatggtgggatccacttagtgataggacccataacttatttttttttttgtctatctctctccaaattgcaa 6288125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 29188650 - 29188734
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatca-tctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  || ||||||| |||||| || || |   |||||||||||||||||||||||| ||||||    
T  29188650 taaaaaataattaatgatggtgggacccgcttagtgataggacgcaccacttgtttttttgtgtctatctctctccaaattgcaa 29188734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 38397085 - 38397199
Alignment:
Q  185 taattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 284  Q
    |||||| ||||||||||   |||||| | |||| |||||  ||||||||| | ||||||||||||| ||| |||| | ||||| |||||| ||| |||||    
T  38397085 taattattgatggtgggactcacttaatagtagcacccactatctattttatttgtctatctctcttcaaattgc-atactccgtttattatacaaaatg 38397183  T
Q  285 aagaggatcttcaccc 300  Q
     |||||||||| ||||    
T  38397184 gagaggatctttaccc 38397199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 19905920 - 19905981
Alignment:
Q  220 cccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaa 282  Q
    |||| |||||||||| |||||||||||||||| || |||| | |||||||||||| |||||||    
T  19905920 cccaccatctattttatgtgtctatctctctcaaaattgc-atactccatttattataccaaa 19905981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 41435271 - 41435205
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatctatttttt-gtgtctatctctctccaa 254  Q
    |||| |||||||| ||||||||||| ||||| ||| ||  |||||||| ||||||||||||||||||    
T  41435271 taataatggtgggatccacttagtgataggatccaccacttatttttttgtgtctatctctctccaa 41435205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 36758885 - 36758817
Alignment:
Q  232 tttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccca 301  Q
    ||||||||||||||||||||||| |||| ||  ||||||||||||   ||||| |||||||||| |||||    
T  36758885 tttttgtgtctatctctctccaaattgc-aacttccatttatttttataaatggagaggatctttaccca 36758817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 8e-53; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 118 - 300
Target Start/End: Complemental strand, 50294201 - 50294019
Alignment:
Q  118 tacgtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtag 217  Q
    ||||||||| |  |||||||  ||||| |||||||||||||| | |||||||        ||||||||||||||||||||| || |||||||||||||||    
T  50294201 tacgtgtttctcaatttcttccatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtaggatccacttagtggtag 50294102  T
Q  218 gacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  50294101 gacccaccatctattttttgtgtctatctctctccaacttgcaaatctccatttattttgccaaatgaagaggatcttcaccc 50294019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 50484326 - 50484505
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | ||||||||||||||| |||||||||||||| | |||||||        ||||||||||||||||| ||||||  |||||||||||| | ||    
T  50484326 gtgtttctccatttctttaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgacggtgggacccacttagtggttgtac 50484425  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  50484426 ccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 50484505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 12151707 - 12151886
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | ||||| || |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  |||||||||||||||||    
T  12151707 gtgtttctccatttattcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggac 12151806  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||  ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||    
T  12151807 ccacaatctattttttgtgtctttctctctccaactggcaaaactccatttattttgccaaatggagaagatcttcaccc 12151886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 48327231 - 48327110
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    |||||||||||||||||||||||   ||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| |||||||||||||     
T  48327231 taaaatataattaatgatggtggac-ccacttagtggtaggactcaccatctattttttttgtctatctctctccaacttgcaaatctccatttattttg 48327133  T
Q  278 ccaaatgaagaggatcttcaccc 300  Q
    ||||||| ||| |||||||||||    
T  48327132 ccaaatggagatgatcttcaccc 48327110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 178 - 301
Target Start/End: Complemental strand, 23862033 - 23861907
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggac---ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatt 274  Q
    |||||||||||||||||||||||| |||||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23862033 taaaatataattaatgatggtgggatccacttagtggtaggattcaccaccatctattttttgtgtctatctctctccaacttgcaaaacttcatttatt 23861934  T
Q  275 ttaccaaatgaagaggatcttcaccca 301  Q
    || | ||||  ||||||| ||||||||    
T  23861933 ttgctaaatagagaggatattcaccca 23861907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 207 - 302
Target Start/End: Complemental strand, 7840728 - 7840633
Alignment:
Q  207 cttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacccat 302  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||||    
T  7840728 cttaatggtaggacccatcatctatttcttgtgtctatctctctccaacttacaaaactccatttattctgccaaatgaataggatcttcacccat 7840633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 12380907 - 12380833
Alignment:
Q  226 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  12380907 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 12380833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 12384974 - 12384900
Alignment:
Q  226 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  12384974 atctattttttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 12384900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 121 - 296
Target Start/End: Original strand, 40328216 - 40328390
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaa-gacacgtgaaatctttnnnnnnn-taaaatataattaatgatggtggggtccacttagtggtagg 218  Q
    |||||| ||||||||||||||||| ||||||||| ||||| | |||||||         |||||||||| ||||||||||||   |||||||||||| ||    
T  40328216 gtgtttcttcatttctttaatttggagagataaaagacacataaaatcttgaaaaaaagtaaaatataactaatgatggtggaacccacttagtggtggg 40328315  T
Q  219 acccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttc 296  Q
    ||||| ||||||||||| |||||||||||||  ||| ||||||||||||||||||||| ||||||| |||||||||||    
T  40328316 acccaccatctattttt-gtgtctatctctc--caatttgcaaaactccatttattttgccaaatggagaggatcttc 40328390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 217 - 300
Target Start/End: Original strand, 45978041 - 45978124
Alignment:
Q  217 ggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  45978041 ggacccaccatctattttttgtatctatctctctccaacttgcaaaactccatttattttatcaaatagagaggatcttcaccc 45978124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 18976377 - 18976260
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaa 282  Q
    ||||||||||||| ||||  | ||||| |||| ||| ||| |||||||| |||||||||||||||||||||| ||||||||||| |||||||||| ||||    
T  18976377 ataattaatgatgatgggacctacttaatggttggatccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttattttagcaaa 18976278  T
Q  283 tgaagaggatcttcaccc 300  Q
    || |||||||||| ||||    
T  18976277 tggagaggatcttaaccc 18976260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 186 - 299
Target Start/End: Complemental strand, 32361377 - 32361264
Alignment:
Q  186 aattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatga 285  Q
    ||||||||||| ||||  | ||||||| |||||| ||| ||||||| ||||||||| ||||||||||||||| |||||||| | |||||| ||||||||     
T  32361377 aattaatgatgatgggacctacttagtagtaggatccaccatctatcttttgtgtccatctctctccaacttacaaaactctaattatttcaccaaatgg 32361278  T
Q  286 agaggatcttcacc 299  Q
    ||||||| ||||||    
T  32361277 agaggattttcacc 32361264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 242
Target Start/End: Complemental strand, 12381045 - 12380924
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||   ||||||||||||| ||    
T  12381045 gtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggactcacttagtggtagaac 12380946  T
Q  221 ccatcatctattttttgtgtct 242  Q
    ||| ||||||||||||||||||    
T  12380945 ccaccatctattttttgtgtct 12380924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 121 - 242
Target Start/End: Complemental strand, 12385112 - 12384991
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||   ||||||||||||| ||    
T  12385112 gtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggactcacttagtggtagaac 12385013  T
Q  221 ccatcatctattttttgtgtct 242  Q
    ||| ||||||||||||||||||    
T  12385012 ccaccatctattttttgtgtct 12384991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 52280117 - 52280034
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||| ||  |||||||| ||||||||||||||||| ||||||    
T  52280117 taaaaaataattaatgatggtgggatccacttagtgataggacccaccacttattttttatgtctatctctctccaaattgcaa 52280034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 1228563 - 1228496
Alignment:
Q  233 ttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||| ||||    
T  1228563 ttttgtgtctgtctctctccaaattgcaaaactccatttattttagtaaatgaagaggatcttaaccc 1228496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 39426207 - 39426313
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||| |||||||||||| |||||  ||| ||||||||||||||||  ||||||||| ||||||||||||||||||| |||   |  |||||||||||||    
T  39426207 taaaaaataattaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgtacttccatttatttta 39426306  T
Q  278 ccaaatg 284  Q
     ||||||    
T  39426307 tcaaatg 39426313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 24977237 - 24977310
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctc 251  Q
    |||||||||| ||||||| ||||   |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  24977237 taaaatataactaatgattgtggaacccacttagtggtaggatccaccatctattttttgtgtctatctctctc 24977310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 26860128 - 26860056
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctct 250  Q
    ||||| |||||||||||| ||||| ||||||||||| ||||||| |  ||||||||| |||||||||||||||    
T  26860128 taaaaaataattaatgattgtgggatccacttagtgataggacctactatctattttatgtgtctatctctct 26860056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 30860794 - 30860726
Alignment:
Q  231 ttttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacc 299  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||| | |||||| || ||||||||||    
T  30860794 ttttttatgtctatatctctccaacttgcaaaactccattcattttgctaaatgatgaagatcttcacc 30860726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 6948899 - 6948825
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatca--tctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  | |||||||| ||||||||||||||||| ||||||    
T  6948899 taatgatggtgggatccacttagtgataggacccaccacttatattttttttgtctatctctctccaaattgcaa 6948825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 30077722 - 30077639
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| |||||||||||| |||||   ||||||||| ||| ||||| ||  |||||||||||||||||||||||||| ||||||    
T  30077722 taaaaaataattaatgatagtgggactcacttagtgatagaacccaccacttattttttgtgtctatctctctccaaattgcaa 30077639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 18107389 - 18107316
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatctatttttt-gtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| |||| |||||| ||||||||| ||  |||||||| |||||||||||||||||| ||||||    
T  18107389 taatgatggtgggatccatttagtgataggacccaccacttatttttttgtgtctatctctctccaaattgcaa 18107316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 46045690 - 46045767
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    |||||||||||||||||| | ||||||||| |||||| |||||  |||||||| |||  |||||||||||| ||||||    
T  46045690 ataattaatgatggtgggatacacttagtgataggactcatcacttattttttttgttcatctctctccaagttgcaa 46045767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 5047453 - 5047377
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgca 260  Q
    ||||||||||||||||||  |||| ||||||||||| |||| ||||||||| ||  || |||||||||||| |||||    
T  5047453 ataattaatgatggtgggacccacatagtggtaggatccattatctattttatgcatcaatctctctccaaattgca 5047377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 24413354 - 24413291
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctc 247  Q
    ||||||||||||||||||  ||| ||| || ||||||||| |||| ||||||||||||||||||    
T  24413354 ataattaatgatggtgggacccatttaatgataggacccaccatccattttttgtgtctatctc 24413291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 46608455 - 46608410
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggaccca 223  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||||    
T  46608455 taaaaaataattaatgatggtgggtcccacttagtggtaggaccca 46608410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 30210740 - 30210665
Alignment:
Q  225 catctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccca 301  Q
    |||| ||||||| |||||||||||||| ||  || ||| |||||||| |||||||||||||||| |||||| |||||    
T  30210740 catcaattttttttgtctatctctctctaaactgtaaa-ctccatttgttttaccaaatgaagaagatcttaaccca 30210665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 32618805 - 32618918
Alignment:
Q  185 taattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 284  Q
    |||||||||||||||||  | ||||| | |||||| |||  |||||||| |  |||| |||||||||||| ||| | | ||||||||||| | |||||||    
T  32618805 taattaatgatggtgggacctacttaatagtaggatccactatctatttata-tgtccatctctctccaaattggata-ctccatttattatgccaaatg 32618902  T
Q  285 aagaggatcttcaccc 300  Q
    ||||||||||| ||||    
T  32618903 aagaggatctttaccc 32618918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 26372249 - 26372321
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctct 250  Q
    ||||| |||||||||| |||||||  ||||||| |||||||| | ||  ||||||||  ||||||||||||||    
T  26372249 taaaaaataattaatggtggtgggacccacttaatggtaggatctattgtctattttacgtgtctatctctct 26372321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 208003 - 208182
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||| ||||  |||||||||||||||||    
T  208003 gtgtttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaagtaaaatataattaatgatgatgggacccacttagtggtaggac 208102  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  208103 ccaccatctattttttgtgtttatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccc 208182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 130 - 300
Target Start/End: Original strand, 4804397 - 4804567
Alignment:
Q  130 catttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatct 229  Q
    |||||||| |||||| |||||||||||||| | |||| ||        ||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  4804397 catttcttcaatttggagagataaagacacataaaattttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacccaccatct 4804496  T
Q  230 attttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  4804497 attttttgtgtctatctctctccaacttgtaaaactccatttattttgccaaatggagaggatcttcaccc 4804567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 118 - 300
Target Start/End: Original strand, 7162021 - 7162203
Alignment:
Q  118 tacgtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtag 217  Q
    ||||||||| | |||||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  ||||||||| ||||    
T  7162021 tacgtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtagtag 7162120  T
Q  218 gacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||    
T  7162121 gacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttatcaaatggagatgatcttcaccc 7162203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 120 - 300
Target Start/End: Original strand, 17944101 - 17944281
Alignment:
Q  120 cgtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtagga 219  Q
    ||||||| | |||||||| |||||| ||||||||| |||| | |||||||        ||||||||||||||||||||||||  ||| ||||||||||||    
T  17944101 cgtgtttctccatttcttcaatttggagagataaaaacacataaaatcttggaaaaagtaaaatataattaatgatggtgggacccatttagtggtagga 17944200  T
Q  220 cccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    || | ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  17944201 cctaccatctattttttgtgtctatctctctccaacttacaaaactccatttattttgccaaatgaagaggatcttcaccc 17944281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 13089827 - 13089705
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||     
T  13089827 taaaatataattaatgatggtggggcccacttagtggtaggacccaccatctatattttgtgtctatctctctccaacttgcaaaacaccatttattttg 13089728  T
Q  278 ccaaatgaagaggatcttcaccc 300  Q
    ||||||| |||||||||||||||    
T  13089727 ccaaatggagaggatcttcaccc 13089705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 130 - 300
Target Start/End: Complemental strand, 21159495 - 21159325
Alignment:
Q  130 catttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatct 229  Q
    |||||||| |||||| ||| |||||||||| | |||||||        ||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  21159495 catttcttcaatttggagatataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggacccaccatct 21159396  T
Q  230 attttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||    
T  21159395 attttttgtgtctatttctctccaacttgcaaaacttcatttattttaacaaatggagaggatcttcaccc 21159325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 121 - 299
Target Start/End: Complemental strand, 1249281 - 1249105
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| | |||||||||||| | |||||||        ||||||||||||||||||||||||  |||||||||||||||||    
T  1249281 gtgtttctccatttcttcaatttggaaagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggac 1249182  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacc 299  Q
    ||| |||||||||||  ||||| |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  1249181 ccaccatctattttt--tgtctgtctctctccaacttacaaaactccatttattttgccaaatggagaggatcttcacc 1249105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 12412634 - 12412756
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    |||||||||||||||||||||||   |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  12412634 taaaatataattaatgatggtggaacccacttagtggtaggacccaccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttg 12412733  T
Q  278 ccaaatgaagaggatcttcaccc 300  Q
    ||||||| ||| |||||| ||||    
T  12412734 ccaaatggagaagatctttaccc 12412756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 178 - 297
Target Start/End: Original strand, 27826535 - 27826654
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| || || ||||||||    
T  27826535 taaaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctctctcaaccttgcaaatcttcagttatttta 27826634  T
Q  278 ccaaatgaagaggatcttca 297  Q
    ||||||| ||||||||||||    
T  27826635 ccaaatggagaggatcttca 27826654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 227642 - 227522
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||| ||||| ||||||| |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||  ||||||||||||||||||||    
T  227642 taaaaaataatcaatgatgatgggatccacttagtggtaggacccaccatctattcttttgtgtctatctctctccaaaatgcaaaactccatttatttt 227543  T
Q  277 accaaatgaagaggatcttca 297  Q
    | |||||| ||||||||||||    
T  227542 agcaaatggagaggatcttca 227522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 32737895 - 32737979
Alignment:
Q  219 acccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacccatg 303  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  32737895 acccaccatctattttttgtgtctatctctctccaacctgcaaaactctatttattttgccaaatggagaggatcttcacccatg 32737979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 178 - 301
Target Start/End: Complemental strand, 13888601 - 13888477
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||| ||||||||||||| ||||  ||| ||| |||||||| ||| |||||||| |||||||| ||||||||||||| ||||||||||| |||||||||    
T  13888601 taaaaaataattaatgatgatgggacccagttaatggtaggaaccaccatctattattttgtgtatatctctctccaaattgcaaaactctatttatttt 13888502  T
Q  277 accaaatgaagaggatcttcaccca 301  Q
    | || ||  |||||||||| |||||    
T  13888501 agcatattgagaggatcttaaccca 13888477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 24484876 - 24484959
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  |||||||||| ||||||||| ||  |||||||||||||||||||||||||| ||||||    
T  24484876 taaaaaataattaatgatggtgggacccacttagtgataggacccaccacttattttttgtgtctatctctctccaaattgcaa 24484959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 292
Target Start/End: Complemental strand, 7215923 - 7215816
Alignment:
Q  185 taattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 284  Q
    ||||||||||| |||||  ||| ||||||||||||||||  ||||||||| ||||||||||||||||||| |||   |  ||||||||||||| ||||||    
T  7215923 taattaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctctctccaaattgtgcacttccatttattttatcaaatg 7215824  T
Q  285 aagaggat 292  Q
     |||||||    
T  7215823 gagaggat 7215816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 17828639 - 17828524
Alignment:
Q  185 taattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 284  Q
    |||||| ||||| |||| |||||||| | |||| | |||  ||||||||| ||||||||||||||||||| |||| | |||||| ||||| |||||||||    
T  17828639 taattattgatgatgggatccacttaatagtagaatccactatctattttatgtgtctatctctctccaaattgc-atactccaattattataccaaatg 17828541  T
Q  285 aagaggatcttcaccca 301  Q
     |||||||||| |||||    
T  17828540 tagaggatctttaccca 17828524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 29698103 - 29698220
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| ||| |||||||||| | |||||||        ||||||||||||||||||||||||  ||||||| ||||||||     
T  29698103 gtgtttctccatttcttcaatttggagaaataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttaatggtaggat 29698202  T
Q  221 ccatcatctattttttgt 238  Q
    ||| ||||||||||||||    
T  29698203 ccaccatctattttttgt 29698220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 1516250 - 1516163
Alignment:
Q  212 tggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||| ||| ||| |||||||||||||| || |||||||||||| |||| |||||||||||||||| ||||||| | |||||||| ||||    
T  1516250 tggtgggatccaccatctattttttgtatccatctctctccaaattgc-aaactccatttattttgccaaatggataggatcttaaccc 1516163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 1518339 - 1518252
Alignment:
Q  212 tggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||| ||| ||| |||||||||||||| || |||||||||||| |||| |||||||||||||||| ||||||| | |||||||| ||||    
T  1518339 tggtgggatccaccatctattttttgtatccatctctctccaaattgc-aaactccatttattttgccaaatggataggatcttaaccc 1518252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 2800689 - 2800574
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||| ||||| ||||||||||||  ||||||| ||||| || |||  ||||||||| ||||||||||||||||||| |||   |  |||||| ||||||    
T  2800689 taaaaaataatcaatgatggtgggacccacttaatggtatgatccactatctattttatgtgtctatctctctccaaattgtgtatttccattaatttta 2800590  T
Q  278 ccaaatgaagaggatc 293  Q
     |||||| ||||||||    
T  2800589 tcaaatggagaggatc 2800574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 7098263 - 7098190
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  || |||||| ||||||||||||||||| ||||||    
T  7098263 taatgatggtgggatccacttagtgataggacccaccacttatttttttttgtctatctctctccaaattgcaa 7098190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 7545645 - 7545718
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatctatttttt-gtgtctatctctctccaacttgcaa 261  Q
    ||||||| ||||| ||||||||||| ||||||||| ||  |||||||| |||||||||||||||||| ||||||    
T  7545645 taatgatagtgggatccacttagtgataggacccaccacttattttttggtgtctatctctctccaaattgcaa 7545718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 2142371 - 2142288
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| |||||||||||||||||   |||| || || | ||||||| ||  |||||||||||||||||||||||||| ||||||    
T  2142371 taaaaaataattaatgatggtggaacccacctaatgatgggacccaccacttattttttgtgtctatctctctccaaattgcaa 2142288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 1515572 - 1515497
Alignment:
Q  225 catctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccca 301  Q
    |||||||||||| | || |||||||||||| |||| |||||||||||||||| ||||||  | |||||||| |||||    
T  1515572 catctattttttttatccatctctctccaaattgc-aaactccatttattttgccaaattgataggatcttaaccca 1515497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 29229149 - 29229204
Alignment:
Q  236 tgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggat 292  Q
    ||||||||||||||||||| ||||| | ||||||||||| ||||||||| |||||||    
T  29229149 tgtgtctatctctctccaaattgcata-ctccatttattataccaaatggagaggat 29229204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 30460864 - 30460918
Alignment:
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    |||||| ||| ||||||||||||||| ||||||| |||| ||||||||||||||||    
T  30460864 ccatcaactactttttgtgtctatctttctccaaattgc-aaactccatttatttt 30460918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 12734413 - 12734478
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctct 250  Q
    |||||||||||||||||| | ||||||||| ||||  |||| ||||| ||||||| |||||||||||    
T  12734413 ataattaatgatggtgggattcacttagtgatagg-tccattatctagtttttgtttctatctctct 12734478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 28696680 - 28696628
Alignment:
Q  231 ttttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 284  Q
    |||||| ||||||||||||||||| |||| |||||| ||||||||| |||||||    
T  28696680 ttttttttgtctatctctctccaaattgc-aaactcaatttattttgccaaatg 28696628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 32254109 - 32254033
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaa 254  Q
    ||||| |||||||||||| |||||   |||||| || ||||||||| || || |||||| |||||||||| ||||||    
T  32254109 taaaaaataattaatgatagtgggactcacttaatgataggacccaccaccttttttttttgtctatctccctccaa 32254033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 121 - 301
Target Start/End: Original strand, 21151092 - 21151272
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  ||||||||||||||||     
T  21151092 gtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtgggacccacttagtggtaggat 21151191  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccca 301  Q
    ||  ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  21151192 cctccatctatttcttgtgtctatctctctccaacttgcaaaactccatttattttgccaaatggagaggatcttcaccca 21151272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 131 - 301
Target Start/End: Complemental strand, 9559179 - 9559009
Alignment:
Q  131 atttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatcta 230  Q
    |||||||  ||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  9559179 atttcttccatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggacccaccatcta 9559080  T
Q  231 ttttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccca 301  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  9559079 ttttttgtatctatctctctccaacttgcaaatctccatttattttgccaaatggagaggatcttcaccca 9559009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 121 - 299
Target Start/End: Complemental strand, 45260562 - 45260384
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||| | |||||||        ||||||||||||||||||| |||| |||||||||||||||||     
T  45260562 gtgtttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaagtaaaatataattaatgatgatgggatccacttagtggtaggat 45260463  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcacc 299  Q
    |||  ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  45260462 ccacaatctattttttgtgtctatctctctccaacttgcaaaactcaatttattttgccaaatggagaggatcttcacc 45260384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 16366458 - 16366637
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| ||||||||| |||||| |||||||        ||||||||||||||||||||||||   |||||||||||||||     
T  16366458 gtgtttctccatttcttcaatttggagagataaaaacacgtaaaatcttgaaaaaagtaaaatataattaatgatggtgggacacacttagtggtaggat 16366557  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||| ||||||||| || |||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||    
T  16366558 ccaccatctatttcttatgtctatctctctccaacttgcaaaactccatttattttgtcaaatggagaggatcttcaccc 16366637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 131 - 300
Target Start/End: Original strand, 4888417 - 4888586
Alignment:
Q  131 atttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatcta 230  Q
    |||||||  ||||| |||||||||||||| | |||||||        ||||||||||||||||||||||||  | ||||||||||||||||||  |||||    
T  4888417 atttcttccatttggagagataaagacacataaaatcttaaaaaacataaaatataattaatgatggtgggacctacttagtggtaggacccactatcta 4888516  T
Q  231 ttttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  |||||| |||||||||||||||    
T  4888517 ttttttgtgtctatctctctccaacttgcaaatctccatttattttgtcaaatggagaggatcttcaccc 4888586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 12139323 - 12139446
Alignment:
Q  178 taaaatataattaatgatggtggggtcc-acttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||||||||||||||||||||||  || ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12139323 taaaatataattaatgatggtgggaccccacttaatggtaggacccaccatctattttttgtgtctatctctctccaacttgcaaaacttcatttatttt 12139422  T
Q  277 accaaatgaagaggatcttcaccc 300  Q
     |||||||||||| ||||||||||    
T  12139423 gccaaatgaagagaatcttcaccc 12139446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 7362508 - 7362686
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | |||||||| |||||| |||||||||||||| | |||||||        |||||||||||||||||||||||   ||| ||||||||| |||    
T  7362508 gtgtttctccatttcttcaatttggagagataaagacacataaaatcttgaaaaaagtaaaatataattaatgatggtggaacccatttagtggtacgac 7362607  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||| ||| |||||||||||    
T  7362608 ccaccatctattttttgtgtctatctctctccaatttgcaaaactccatttattttgtcaaatggaga-gatcttcaccc 7362686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 25084863 - 25084719
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| | ||||| |||||||||||||||||||||||| | |||| ||        ||||||||||||||||||||||||  |||||||||||||||||    
T  25084863 gtgtttctccatttttttaatttgaagagataaagacacataaaattttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggac 25084764  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaact 265  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||    
T  25084763 ccaccatctattttttgtgtctatctctctccaacttacaaaact 25084719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 18198253 - 18198375
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||||||||||||   |||||||||| || ||||| |||||||||||||||||||| | ||||||| |||||||||||||||||||||     
T  18198253 taaaatataattaatgatggtgggactcacttagtggcagaacccaccatctattttttgtgtctatttatctccaatttgcaaaactccatttattttg 18198352  T
Q  278 ccaaatgaagaggatcttcaccc 300  Q
    ||||||| |||||||||||||||    
T  18198353 ccaaatggagaggatcttcaccc 18198375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 44647959 - 44648083
Alignment:
Q  178 taaaatataattaatgatggtggggt--ccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattt 275  Q
    |||||||||||||||||||| |||    |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44647959 taaaatataattaatgatggagggagacccacttagtggtcggatccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttattt 44648058  T
Q  276 taccaaatgaagaggatcttcaccc 300  Q
    |  |||||| |||||||||||||||    
T  44648059 tgtcaaatggagaggatcttcaccc 44648083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 47226152 - 47226035
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||||||||||||  ||| |||||||| ||||||| |||  ||||||||||| |||||||||||||||||||||||||||||||||||     
T  47226152 taaaatataattaatgatggtgggacccatttagtggtgggacccaccat--attttttgtgtttatctctctccaacttgcaaaactccatttattttg 47226055  T
Q  278 ccaaatgaagaggatcttca 297  Q
    ||||||| ||||||||||||    
T  47226054 ccaaatggagaggatcttca 47226035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 33450503 - 33450626
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||| ||||||||||||| ||||  |||||||||||| ||||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||||||    
T  33450503 taaaaaataattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttatttt 33450602  T
Q  277 accaaatgaagaggatcttcaccc 300  Q
    | |||||| |||||||||| ||||    
T  33450603 agcaaatggagaggatcttaaccc 33450626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 47500361 - 47500238
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||| ||||||||||||| ||||  |||||||||||| ||||||| |||||||| |||||||||||||||||||||| || |||||||| |||||||||    
T  47500361 taaaaaataattaatgatgatgggacccacttagtggttggacccaccatctattcttttgtgtctatctctctccaaattacaaaactcaatttatttt 47500262  T
Q  277 accaaatgaagaggatcttcaccc 300  Q
    |  ||||| |||||||||| ||||    
T  47500261 agtaaatggagaggatcttaaccc 47500238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 301
Target Start/End: Complemental strand, 39855891 - 39855769
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    |||||| |||||||||||| ||||  |||||||||||||||||| | ||||| |||| ||||||||||||||||||| || | |||||||||||| |||     
T  39855891 taaaatttaattaatgatgatgggacccacttagtggtaggaccgaccatcttttttatgtgtctatctctctccaaattac-aaactccatttaatttg 39855793  T
Q  278 ccaaatgaagaggatcttcaccca 301  Q
     ||||||||||| ||||| |||||    
T  39855792 tcaaatgaagagaatcttaaccca 39855769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 47799978 - 47799895
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  |||||||||| ||||||||||||  |||||||||||||||||||||||||| ||||||    
T  47799978 taaaaaataattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctctctccaaattgcaa 47799895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 34986024 - 34985909
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctatt-ttttgtgtctatctctctccaacttgcaaaactccatttatttt 276  Q
    ||||| ||||||||||||| ||||   || ||||||||  |||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||||||    
T  34986024 taaaaaataattaatgatgatgggactcatttagtggtttgacccaccatctattcttttgtgtctatctctctccaaattgcaaaactcaatttatttt 34985925  T
Q  277 accaaatgaagaggat 292  Q
    | |||||  |||||||    
T  34985924 agcaaattgagaggat 34985909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 184 - 292
Target Start/End: Original strand, 989132 - 989239
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaat 283  Q
    ||||||||| ||||| ||  | ||||||||||||||||||  || |||||||||||||||||||||||||| |||| |||||||||||| |||  |||||    
T  989132 ataattaattatggttggacctacttagtggtaggacccactatatattttttgtgtctatctctctccaaattgc-aaactccatttaatttgtcaaat 989230  T
Q  284 gaagaggat 292  Q
    | |||||||    
T  989231 ggagaggat 989239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 32915954 - 32916056
Alignment:
Q  179 aaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttac 278  Q
    ||||||||||| |||||||||||   |||||| ||||||||||||  || |||||||||||||||||||||| ||| |||| |  |||||||||||||||    
T  32915954 aaaatataattcatgatggtgggactcacttaatggtaggacccactatttattttttgtgtctatctctcttcaaattgc-atcctccatttattttac 32916052  T
Q  279 caaa 282  Q
    ||||    
T  32916053 caaa 32916056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 47271178 - 47271107
Alignment:
Q  225 catctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttca 297  Q
    |||| ||||||||||||||||||||||||| |||| |||||||||||||||| | ||||| ||||||||||||    
T  47271178 catcaattttttgtgtctatctctctccaaattgc-aaactccatttattttgctaaatggagaggatcttca 47271107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 30588532 - 30588615
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| ||||||||||||||||||  |||||||||| |||||||| |||  ||||||||||||||||||||  |||| ||||||    
T  30588532 taaaaaataattaatgatggtgggacccacttagtgataggacccgtcacttattttttgtgtctatctcttcccaaattgcaa 30588615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 19027751 - 19027685
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaa 254  Q
    ||||||||||||| ||||||||||| ||||||||| ||| || ||||||||||||||||||||||||    
T  19027751 taatgatggtgggatccacttagtgataggacccaccatttatttttttgtgtctatctctctccaa 19027685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 20726885 - 20726951
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaa 254  Q
    ||||||||||||| ||||||||||| ||||||||| ||| || ||||||||||||||||||||||||    
T  20726885 taatgatggtgggatccacttagtgataggacccaccatttatttttttgtgtctatctctctccaa 20726951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 29631051 - 29631165
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaat 283  Q
    |||||||||||| |||||  | || ||||||| |||||||  |||||| |||||||||||  ||||| ||| |||| |||||||||||||||||||||||    
T  29631051 ataattaatgatagtgggacctacatagtggttggacccactatctatgttttgtgtcta--tctcttcaaattgc-aaactccatttattttaccaaat 29631147  T
Q  284 gaagaggatcttcaccca 301  Q
    | ||||||| || |||||    
T  29631148 ggagaggatattaaccca 29631165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 14696825 - 14696752
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  || |||||||||||||||||||||||| ||||||    
T  14696825 taatgatggtgggatccacttagtgataggacccaccacttatttttttgtgtctatctctctccaaattgcaa 14696752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 46802403 - 46802336
Alignment:
Q  184 ataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctc 251  Q
    |||||||| | |||||||  |||||||||||||||||||| | |||||||||| ||||||||||||||    
T  46802403 ataattaacggtggtgggacccacttagtggtaggacccaccgtctattttttatgtctatctctctc 46802336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 30102501 - 30102574
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  || |||||| ||||||||||||||||| ||||||    
T  30102501 taatgatggtgggatccacttagtgataggacccaccacttatttttttttgtctatctctctccaaattgcaa 30102574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 33608901 - 33608849
Alignment:
Q  231 ttttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatg 284  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  33608901 ttttttgtgtttatctctctccaaattgcaaa-ctccatttattttaccaaatg 33608849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 7373872 - 7373987
Alignment:
Q  186 aattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatga 285  Q
    |||||||||| ||||| || ||||| | ||| ||||||   ||||||||||||  |||||||||||||| ||||| | | |||||||||||| | || ||    
T  7373872 aattaatgatagtgggatctacttaatagtaagacccactgtctattttttgtacctatctctctccaaattgcatatc-ccatttattttaaccaacga 7373970  T
Q  286 agaggatcttcacccat 302  Q
    |||||||||| ||||||    
T  7373971 agaggatcttaacccat 7373987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 47080433 - 47080509
Alignment:
Q  186 aattaatgatggtggggtccacttagtggtaggacccatcatctatttt-ttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||||||  || ||||||| ||||||||||||  | |||| |||||||||||||||||||| ||||||    
T  47080433 aattaatgatggtgggacccgcttagtgataggacccatcacttgtttttttgtgtctatctctctccaaattgcaa 47080509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 28528549 - 28528631
Alignment:
Q  179 aaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    |||| |||||||||||||||||| | | ||||||| |||||| || ||  | |||||| ||||||||||||||||| ||||||    
T  28528549 aaaaaataattaatgatggtgggattcgcttagtgataggactcaccacttgttttttttgtctatctctctccaaattgcaa 28528631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 32916166 - 32916236
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctct 248  Q
    ||||| |||||||||||||||||  |||||||||||||| ||||||  | |||||||| |||| |||||||    
T  32916166 taaaaaataattaatgatggtggaatccacttagtggtatgacccacaacctatttttcgtgtgtatctct 32916236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 29844316 - 29844364
Alignment:
Q  206 acttagtggtaggacccatcatctattttttgtgtctatctctctccaa 254  Q
    |||||||||||| |||||  ||||||||| |||||||||||||||||||    
T  29844316 acttagtggtagaacccactatctattttatgtgtctatctctctccaa 29844364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 19889112 - 19889029
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||| |||||||||||||||||   |||||||||| |||||||||  |  |||||||||| ||||||||| || || ||||||    
T  19889112 taaaaaataattaatgatggtggaacccacttagtgataggacccacaacttattttttgtatctatctctttctaaattgcaa 19889029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 35737136 - 35737193
Alignment:
Q  204 ccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    |||| ||||| | ||||||| ||  |||||||||||||||||||||||||| ||||||    
T  35737136 ccacctagtgatgggacccaccacttattttttgtgtctatctctctccaaattgcaa 35737193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 4269187 - 4269257
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  |||||||| ||| | ||||||||||| ||||||    
T  4269187 taatgatggtgggatccacttagtgataggacccaccacttatttttt-tgtgt-tctctctccaaattgcaa 4269257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 16475 - 16353
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  16475 taaaatataattaatgatgatgggacccacttagtggtaggacccaccatttattttttgtgtctatctctctccaacttgcaaaactccatttattttg 16376  T
Q  278 ccaaatgaagaggatcttcaccc 300  Q
    || || | |||||||||||||||    
T  16375 cctaacggagaggatcttcaccc 16353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 7087 - 7270
Alignment:
Q  121 gtgttttttcatttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggac 220  Q
    |||||| |||||||||| |||||| |||||||||||||  | |||||||        |||||||||||||||||||||||   ||||||| | |||||||    
T  7087 gtgtttcttcatttcttcaatttgcagagataaagacatataaaatcttgaaaaaaataaaatataattaatgatggtggaacccacttaatagtaggac 7186  T
Q  221 ccatcatctattttttgtgtctatctctctccaacttgcaaaactcc----atttattttaccaaatgaagaggatcttcaccc 300  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||    ||||||||| ||||||| |||||||||||||||    
T  7187 ccaccatctattttttgtgtctatctctctccaacttgcaaaactccatttatttattttgccaaatggagaggatcttcaccc 7270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 181 - 302
Target Start/End: Complemental strand, 9276 - 9155
Alignment:
Q  181 aatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttacca 280  Q
    ||||||||||||||||||||  ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||    
T  9276 aatataattaatgatggtggaatccacttagtggttggacccaccatctattttctgtgtctatctctctccaacttgcaaatctccatttattttgcca 9177  T
Q  281 aatgaagaggatcttcacccat 302  Q
    |||| ||| |||||||||||||    
T  9176 aatggagatgatcttcacccat 9155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 132 - 295
Target Start/End: Complemental strand, 6559 - 6396
Alignment:
Q  132 tttctttaatttgaagagataaagacacgtgaaatctttnnnnnnntaaaatataattaatgatggtggggtccacttagtggtaggacccatcatctat 231  Q
    |||||| |||||  |||||||||||||| | |||||||        ||||||||||||||||||||| |   ||| ||||| |||||||||| |||||||    
T  6559 tttcttcaattttgagagataaagacacataaaatcttggaaaaagtaaaatataattaatgatggttgtacccatttagttgtaggacccaccatctat 6460  T
Q  232 tttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatctt 295  Q
    ||||||||||| ||||| ||||||||||||||  ||||||||||||| ||||  ||||||||||    
T  6459 tttttgtgtctgtctctttccaacttgcaaaatcccatttattttacgaaatagagaggatctt 6396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 73896 - 73817
Alignment:
Q  217 ggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttc 296  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||  |||||||||||    
T  73896 ggacccaccatctatattttgcgtctatctctctccaacttgcaaaacaccatttattttgccaaatagagaggatcttc 73817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 13710 - 13799
Alignment:
Q  212 tggtaggacccatcatctattttttgt-gtctatctctctccaacttgcaaaactccatttattttaccaaatgaagaggatcttcaccc 300  Q
    |||| ||||||| |||||||||||| | |||||||||||||||||| ||||||||| ||||||||| ||||||| ||| |||||||||||    
T  13710 tggtgggacccaccatctatttttttttgtctatctctctccaactagcaaaactctatttattttgccaaatggagaagatcttcaccc 13799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 301
Target Start/End: Complemental strand, 22520 - 22398
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctccaacttgcaaaactccatttatttta 277  Q
    ||||||||||||||| || ||||    ||||||||||||||| |||  ||||||||||||||||||||||| |  || |||| ||||||||||||||||     
T  22520 taaaatataattaattattgtggaactcacttagtggtaggatccactatctattttttgtgtctatctctttgtaaattgc-aaactccatttattttg 22422  T
Q  278 ccaaatgaagaggatcttcaccca 301  Q
    | ||||| |||||||||| |||||    
T  22421 ctaaatgcagaggatcttaaccca 22398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 17384 - 17311
Alignment:
Q  178 taaaatataattaatgatggtggggtccacttagtggtaggacccatcatctattttttgtgtctatctctctc 251  Q
    ||||| ||||||||||||||||||  |||||||||| ||||||||| ||  |||||||||||||||||||||||    
T  17384 taaaaaataattaatgatggtgggacccacttagtgataggacccagcacttattttttgtgtctatctctctc 17311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 4768 - 4695
Alignment:
Q  189 taatgatggtggggtccacttagtggtaggacccatcatcta-ttttttgtgtctatctctctccaacttgcaa 261  Q
    ||||||||||||| ||||||||||| ||||||||| ||  || |||||||||||||||||||||||| ||||||    
T  4768 taatgatggtgggatccacttagtgataggacccaccacttatttttttgtgtctatctctctccaaattgcaa 4695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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